Scientia Agricultura Sinica ›› 2005, Vol. 38 ›› Issue (12): 2549-2554 .doi: 10.3864/j.issn.0578-1752.at-2004-2713

• RESEARCH NOTES • Previous Articles     Next Articles

Analysis on SSR Polymorphisms of Japonica Rice Varieties

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  1. 浙江省农业科学院
  • Received:2004-08-30 Revised:2005-09-23 Online:2005-12-10 Published:2005-12-10

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Abstract: 395 SSR (Simple sequence repeats) primer pairs were used to analyze 16 Japonica and Indica rice varieties. The result showed that the polymorphisms detected were 11.12% among Japanese closely related varieties (JCRV，Japonica), 17.58% between JCRV and Italy varieties (Japonica), 20.80% between JCRV and America varieties (Indica) and 38.62% between JCRV and Philippines varieties (Indica). It implied that polymorphisms were lower among identical Japonica type varieties than between different ecological type varieties, and lowest among JCRV in the identical Japonica type varieties. However, polymorphisms were obviously different among JCRV, variance ranges of that were from 3.79% to 15.95%. Furthermore, there were significant differences in polymorphisms among various chromosomes as well; the polymorphisms of SSR markers in tenth chromosomes were always lowest among any type varieties.

Key words: Japonica rice, Closely related variety, SSR analysis, Polymorphism, Detected rate

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