Scientia Agricultura Sinica ›› 2020, Vol. 53 ›› Issue (3): 642-657.doi: 10.3864/j.issn.0578-1752.2020.03.015
• ANIMAL SCIENCE·VETERINARY SCIENCE·RESOURCE INSECT • Previous Articles Next Articles
SHI TianPei,WANG XinYue,HOU HaoBin,ZHAO ZhiDa,SHANG MingYu,ZHANG Li()
[1] | BENTZINGER C F, XIN W Y, RUDNICKI M A . Building muscle: Molecular regulation of myogenesis. Cold Spring Harbor Perspectives in Biology, 2012,4(2):a008342. |
[2] | WEINTRAUB H . The MyoD family and myogenesis: Redundancy, networks, and thresholds. Cell, 1993,75(7):1241-1244. |
[3] | SABOURIN L A, RUDNICKI M A . The molecular regulation of myogenesis. Clinical Genetics, 2010,57(1):16-25. |
[4] | BUCKINGHAM M, RIGBY P W . Gene regulatory networks and transcriptional mechanisms that control myogenesis. Developmental Cell, 2014,28(3):225-238. |
[5] | KAWAKAMI K, SATO S, H, IKEDA K. Six family genes-structure and function as transcription factors and their roles in development. Bioessays, 2000,22(7):616-626. |
[6] | TESSMAR K, LOOSLI F, WITTBRODT J . A screen for co-factors of Six3. Mechanisms of Development, 2002,117(1):103-113. |
[7] | ZHU C C, DYER M A, UCHIKAWA M, KONDOH H, LAGUTIN O V, OLIVER G . Six3-mediated auto repression and eye development requires its interaction with members of the Groucho-related family of co-repressors. Development, 2002,129(12):2835-2849. |
[8] | MCKINNELL I W, JEFF I, FABIEN L G, PUNCH V G J, ADDICKS G C, GREENBLATT J F, F JEFFREY D, RUDNICKI M A. Pax7 activates myogenic genes by recruitment of a histone methyltransferase complex. Nature Cell Biology, 2008,10(1):77-84. |
[9] | 李雪娇, 刘晨曦, 杨开伦, 刘明军 . 德美羊与中美羊胎儿期骨骼肌组织学结构发育特征差异性研究. 草食家畜, 2017(4):1-6. |
LI X J, LIU C X, YNGA K L, LIU M J . Study on differentiation of fetal skeletal muscle development characteristics between German and Chinese Merino Sheep. Grass-feeding Livestock, 2017(4):1-6.(in Chinese) | |
[10] | 张伟 . 绵羊骨骼肌高表达miRNA靶基因的高通量获取及部分候选靶基因生物功能研究[D]. 石河子: 石河子大学, 2015. |
ZHANG W . Research on acquiring target genes of miRNA expressed at a high level in sheep skeletal muscle by a high throughput way and function of partial target[D]. Shihezi: Shihezi University, 2015. ( in Chinese) | |
[11] | 张世芳, 魏彩虹, 陆健, 张小宁, 周鑫磊, 张淑珍, 王光凯, 曹家雪, 赵福平, 张莉 , 杜立新深度测序鉴定绵羊microRNA转录组. 中国畜牧兽医, 2013,40(9):19-22. |
ZHANG S F, WEI C H, LU J, ZHANG X N, ZHOU X L, ZHANG S Z, WANG G K, CAO J X, ZHAO F P, ZHANG L, DU L X . Identification of microRNAome in texel sheep by deep sequencing. China Animal Husbandry &Veterinary Medicine, 2013, 40(9):19-22. (in Chinese) | |
[12] | 黄万龙, 张秀秀, 李嫒, 苗向阳 . 利用RNA-seq技术筛选大白猪皮下和肌内脂肪组织差异表达基因. 遗传, 2017,39(6):501-511. |
HUANG W L, ZHANG X X, LI Y, MIAO X Y . Identification of differentially expressed genes between subcutaneous and intramuscular adipose tissue of Large White pig using RNA-seq. Hereditas(Beijing), 2017,39(6):501-511.(in Chinese) | |
[13] | MARTIN M . Cutadapt removes adapter sequences from high- throughput sequencing reads. EMBnet Journal, 2011, doi: 10.14806/ej.17.1.200. |
[14] | LANGMEAD B, SALZBERG S L . Fast gapped-read alignment with Bowtie 2. Nature Methods, 2012,9:357-359. |
[15] | KIM D, PERTEA G, TRAPNELL C, PIMENTEL H, KELLEY R, SALZBERG S L . TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology, 2013,14(4):R36. |
[16] | MIHAELA P, PERTEA G M, ANTONESCU C M, TSUNG-CHENG C, MENDELL J T, SALZBERG S L . StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nature Biotechnology, 2015,33(3):290-295. |
[17] | FRAZEE A C, GEO P, JAFFE A E, BEN L, SALZBERG S L, LEEK J T . Ballgown bridges the gap between transcriptome assembly and expression analysis. Nature Biotechnology, 2015,33(3):243. |
[18] | ANDERS S, HUBER W . Differential expression analysis for sequence count data. Genome Biology, 2010,11(10):R106.doi: 10.1186/gb-2010-11-10-r106. |
[19] | KIM D, SALZBERG S L . TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biology, 2011,12(8):R72. |
[20] | ZHANG X O, WANG H B, ZHANG Y, LU X, CHEN L L, YANG L . Complementary sequence-mediated exon circularization. Cell, 2014,159(1):134-147. |
[21] | ASHWAL-FLUSS R, MEYER M, PAMUDURTI N R, IVANOV A, BARTOK O, HANAN M, EVANTAL N, MEMCZAK S, RAJEWSKY N, KADENEr S . circRNA biogenesis competes with Pre-mRNA splicing. Molecular Cell, 2014,56(1):55-66. |
[22] | CAMON E, MAGRANE M, BARRELL D, LEE V, DIMMER E, MASLEN J, BINNS D, HARTE N, LOPEZ R, APWEILER R . The gene ontology annotation (GOA) database: sharing knowledge in uniprot with gene ontology. Nucleic Acids Research, 2004,32(Database issue):D262. |
[23] | HATTORI M, ITOH M, ARAKI M, HIRAKAWA M, KAWASHIMA S, OKUDA S, GOTO S, KATAYAMA T, TOKIMATSU T, YAMANISHI Y, KANEHISA M . KEGG for linking genomes to life and the environment. Nucleic Acids Research, 2007,36(suppl.1):D480-D484. |
[24] | MUKAI H, TOSHIMORI M, SHIBATA H, TAKANAGA H, KITAGAWA M, MIYAHARA M, SHIMAKAWA M, ONO Y . Interaction of PKN with alpha-actinin. Journal of Biological Chemistry, 1997,272(8):4740. |
[25] | MINDEN A, LIN A, MCMAHON M, LANGE-CARTER C, DÉRIJARD B, DAVIS R J, JOHNSON G L, KARIN M . Differential activation of ERK and JNK mitogen-activated protein kinases by Raf-1 and MEKK. Science, 1994,266(5191):1719-1723. |
[26] | LEONARDO S, LAURA P, YVONNE T, LEV K, PIER PAOLO P . A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell, 2011,146(3):353-358. |
[27] | 李雪娇, 刘晨曦, 孙亚伟, 杨开伦, 刘明军 . 德国美利奴羊胎儿期骨骼肌组织学结构发育特征研究. 西北农林科技大学学报(自然科学版), 2018,46(5):7-13. |
LI X J, LIU C X, SUN Y W, YANG K L, LIU M J . Study on structure development characteristics of German Merino sheep fetal skeletal muscle tissue. Journal of Northwest A&F University(Natural Science Edition), 2018,46(5):7-13.(in Chinese) | |
[28] | WANG D Z, VALDEZ M R, MCANALLY J, RICHARDSON J, OLSON E N . The Mef2c gene is a direct transcriptional target of myogenic bHLH and MEF2 proteins during skeletal muscle development. Development, 2001,128(22):4623. |
[29] | ZHANG Y Y, VIK T A, RYDER J W, SROUR E F, JACKS T, SHANNON K, CLAPP D W . Nf1 regulates hematopoietic progenitor cell growth and ras signaling in response to multiple cytokines. Journal of Experimental Medicine, 1998,187(11):1893-1902. |
[30] | HEGEDUS B, DASGUPTA B, SHIN J E, EMNETT R J, HART-MAHON E K, ELGHAZI L, BERNAL-MIZRACHI E, GUTMANN D H . Neurofibromatosis-1 regulates neuronal and glial cell differentiation from neuroglial progenitorsin vivo by both cAMP- and Ras-dependent mechanisms. Cell Stem Cell, 2007,1(4):443-457. |
[31] | XIAOHUA W, ESTWICK S A, SHI C, MENGGANG Y, WENYU M, NEBESIO T D, YAN L, JIN Y, REUBEN K, DAVID I . Neurofibromin plays a critical role in modulating osteoblast differentiation of mesenchymal stem/progenitor cells. Human Molecular Genetics, 2006,15(19):2837-2845. |
[32] | NADINE K, SIGMAR S, CHRISTIAN R D, ROBINSON P N, JOHNNY K, CAROLA D, MONIKA O, JIRKO K, STEVENSON D A, THOMAS B . Neurofibromin (Nf1) is required for skeletal muscle development. Human Molecular Genetics, 2011,20(14):2697. |
[33] | PERRY R L, PARKER M H, RUDNICKI M A . Activated MEK1 binds the nuclear MyoD transcriptional complex to repress transactivation. Molecular Cell, 2001,8(2):291-301. |
[34] | RAMOCKI M B, JOHNSON S E, WHITE M A, ASHENDEL C L, KONIECZNY S F, TAPAROWSKY E J . Signaling through mitogen-activated protein kinase and Rac/Rho does not duplicate the effects of activated Ras on skeletal myogenesis. Molecular & Cellular Biology, 1997,17(7):3547-3555. |
[35] | PAGE J L, WANG X L, JOHNSON S E . MEKK1 signaling through p38 leads to transcriptional inactivation of E47 and repression of skeletal myogenesis. Journal of Biological Chemistry, 2004,279(30):30966-30972. |
[36] | GREDINGER E, GERBER A N, TAMIR Y, TAPSCOTT S J, BENGAL E . Mitogen-activated protein kinase pathway is involved in the differentiation of muscle cells. Journal of Biological Chemistry, 1998,273(17):10436-10444. |
[37] | BOST F, AOUADI M, CARON L, BINéTRUY B . The role of MAPKs in adipocyte differentiation and obesity. Biochimie, 2005,87(1):51-56. |
[38] | MYRIAM A, KATHIANE L, MATTHIEU P, YANNICK M B, BERNARD B, FRéDéRIC B . Inhibition of p38MAPK increases adipogenesis from embryonic to adult stages. Diabetes, 2006,55(2):281. |
[39] | FRéDéRIC B, MYRIAM A, LESLIE C, PATRICK E, NATHALIE B, MATTHIEU P, CHRISTIAN D, PAUL H, GILLES P, JACQUES P . The extracellular signal-regulated kinase isoform ERK1 is specifically required for in vitro and in vivo adipogenesis. Diabetes, 2005,54(2):402-411. |
[40] | LIU S, HAN W, JIANG S, ZHAO C, WU C . Integrative transcriptomics and proteomics analysis of longissimus dorsi muscles of Canadian double-muscled Large White pigs. Gene, 2016,577(1):14-23. |
[41] | VOILLET V, SAN CRISTOBAL M, PèRE M-C, BILLON Y, CANARIO L, LIAUBET L, LEFAUCHEUR L . Integrated analysis of proteomic and transcriptomic data highlights late fetal muscle maturation process. Molecular & Cellular Proteomics:MCP, 2018,17(4):672-693. |
[42] | OUYANG H, WANG Z, CHEN X, YU J, LI Z, NIE Q . Proteomic analysis of chicken skeletal muscle during embryonic development. Frontiers in Physiology, 2017,8:281-317. |
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