Journals
  Publication Years
  Keywords
Search within results Open Search
Please wait a minute...
For Selected: Toggle Thumbnails
Identification of novel antisense long non-coding RNA APMAP-AS that modulates porcine adipogenic differentiation and inflammatory responses
ZHANG Lin-zhen, HE Li, WANG Ning, AN Jia-hua, ZHANG Gen, CHAI Jin, WU Yu-jie, DAI Chang-jiu, LI Xiao-han, LIAN Ting, LI Ming-zhou, JIN Long
2023, 22 (8): 2483-2499.   DOI: 10.1016/j.jia.2022.11.005
Abstract208)      PDF in ScienceDirect      
Long non-coding RNAs (lncRNAs) are emerging as powerful regulators of adipocyte differentiation, fat metabolism and gene expression. However, the functional roles and mechanisms of lncRNAs in these processes remain unclear. Here, we identified a novel antisense transcript, named APMAP-AS, transcribed from adipocyte membrane-associated protein (APMAP) in the pig genome. APMAP-AS and APMAP were highly expressed in retroperitoneal adipose of obese pigs, compared with that in control pigs. Using a bone mesenchymal stem cells (BMSCs) adipogenic differentiation model, we found that APMAP-AS positively regulated adipogenic differentiation. APMAP-AS had the potential to form an RNA–RNA duplex with APMAP, and increased the stability of APMAP mRNA. Additionally, APMAP-AS promoted lipid metabolism and inhibited the expression of inflammatory factors. These findings of a natural antisense transcript for a regulatory gene associated with lipid synthesis might further our understanding of lncRNAs in driving adaptive adipose tissue remodeling and preserving metabolic health.
Reference | Related Articles | Metrics
Population genetic variation and historical dynamics of the natural enemy insect Propylea japonica (Coleoptera: Coccinellidae) in China
WANG Meng-qi, ZHANG Hong-rui, XI Yu-qiang, WANG Gao-ping, ZHAO Man, ZHANG Li-juan, GUO Xian-ru
2023, 22 (8): 2456-2469.   DOI: 10.1016/j.jia.2022.08.025
Abstract349)      PDF in ScienceDirect      

Propylea japonica (Coleoptera: Coccinellidae) is a natural enemy insect with a wide range of predation in Chinese mainland and is commonly used in pest management.  However, its genetic pattern (i.e., genetic variation, genetic structure, and historical population dynamics) is still unclear, impeding the development of biological control of insect pests.  Population genetic research has the potential to optimize strategies at different stages of the biological control processes.  This study used 23 nuclear microsatellite sites and mitochondrial COI genes to investigate the population genetics of Propylea japonica based on 462 specimens collected from 30 sampling sites in China.  The microsatellite dataset showed a moderate level of genetic diversity, but the mitochondrial genes showed a high level of genetic diversity.  Populations from the Yellow River basin were more genetically diverse than those in the Yangtze River basin.  Propylea japonica has not yet formed a significant genealogical structure in China, but there was a population structure signal to some extent, which may be caused by frequent gene flow between populations.  The species has experienced population expansion after a bottleneck, potentially thanks to the tri-trophic plant–insect–natural enemy relationship.  Knowledge of population genetics is of importance in using predators to control pests.  Our study complements existing knowledge of an important natural predator in agroecosystems through estimating its genetic diversity and population differentiation and speculating about historical dynamics.

Reference | Related Articles | Metrics
Genome-wide identification and function analysis of the sucrose phosphate synthase MdSPS gene family in apple
ZHANG Li-hua, ZHU Ling-cheng, XU Yu, LÜ Long, LI Xing-guo, LI Wen-hui, LIU Wan-da, MA Feng-wang, LI Ming-jun, HAN De-guo
2023, 22 (7): 2080-2093.   DOI: 10.1016/j.jia.2023.05.024
Abstract241)      PDF in ScienceDirect      

Sucrose phosphate synthase (SPS) is a rate-limiting enzyme that works in conjunction with sucrose-6-phosphate phosphatase (SPP) for sucrose synthesis, and it plays an essential role in energy provisioning during growth and development in plants as well as improving fruit quality.  However, studies on the systematic analysis and evolutionary pattern of the SPS gene family in apple are still lacking.  In the present study, a total of seven MdSPS and four MdSPP genes were identified from the Malus domestica genome GDDH13 v1.1.  The gene structures and their promoter cis-elements, protein conserved motifs, subcellular localizations, physiological functions and biochemical properties were analyzed.  A chromosomal location and gene-duplication analysis demonstrated that whole-genome duplication (WGD) and segmental duplication played vital roles in MdSPS gene family expansion.  The Ka/Ks ratio of pairwise MdSPS genes indicated that the members of this family have undergone strong purifying selection during domestication.  Furthermore, three SPS gene subfamilies were classified based on phylogenetic relationships, and old gene duplications and significantly divergent evolutionary rates were observed among the SPS gene subfamilies.  In addition, a major gene related to sucrose accumulation (MdSPSA2.3) was identified according to the highly consistent trends in the changes of its expression in four apple varieties (‘Golden Delicious’, ‘Fuji’, ‘Qinguan’ and ‘Honeycrisp’) and the correlation between gene expression and soluble sugar content during fruit development.  Furthermore, the virus-induced silencing of MdSPSA2.3 confirmed its function in sucrose accumulation in apple fruit.  The present study lays a theoretical foundation for better clarifying the biological functions of the MdSPS genes during apple fruit development.

Reference | Related Articles | Metrics
The HD-Zip transcription factor GhHB12 represses plant height by regulating the auxin signaling in cotton
LIU Yan, WANG Wei-ping, ZHANG Lin, ZHU Long-fu, ZHANG Xian-long, HE Xin
2023, 22 (7): 2015-2024.   DOI: 10.1016/j.jia.2022.09.022
Abstract248)      PDF in ScienceDirect      
Upland cotton (Gossypium hirsutum L.) is the most important natural textile fiber crop worldwide. Plant height (PH) is a significant component of plant architecture, strongly influencing crop cultivation patterns, overall yield, and economic coefficient. However, cotton genes regulating plant height have not been fully identified. Previously, an HD-Zip gene (GhHB12) was isolated and characterized in cotton, which regulates the abiotic and biotic stress responses and the growth and development processes. In this study, we showed that GhHB12 was induced by auxin. Moreover, overexpression of GhHB12 induces the expression of HY5, ATH1, and HAT4, represses the spatial-temporal distribution, polar transport, and signaling of auxin, alters the expression of genes involved in cell wall expansion, and restrains the plant height in cotton. These results suggest a role of GhHB12 in regulating cotton plant height, which could be achieved by affecting the auxin signaling and cell wall expansion.
Reference | Related Articles | Metrics

Herbicidal activity and biochemical characteristics of the botanical drupacine against Amaranthus retroflexus L.

YU Hua-long, TIAN Ci, SHEN Rong-yan, ZHAO Han, YANG Juan, DONG Jin-gao, ZHANG Li-hui, MA Shu-jie
2023, 22 (5): 1434-1444.   DOI: 10.1016/j.jia.2022.08.120
Abstract686)      PDF in ScienceDirect      

Botanical herbicide has been a hot topic in the research and development of novel pesticides.  The herbicidal activity and biochemical characteristics of the botanical compound drupacine were studied by evaluating its effects on seed germination, seedling growth, morphological and physiological characteristics of Amaranthus retroflexus.  Drupacine inhibited seed germination and seedling growth, and had a median inhibition concentration (IC50) value of 38.99 mg L−1 against Aretroflexus root.  The α-amylase activity and soluble sugar content in treated plants were significantly lower than that of the control.  The expression of α-amylase gene was dosage-dependently inhibited compared to the untreated control.  This suggested that inhibition of α-amylase activity was a mode of action on seed germination.  The root hairs were significantly decreased and part of the root cap fell off after treatment with drupacine.  The ultrastructure observation showed that cell damage of root tips increased with the treatment time.  Drupacine also increased the relative conductivity and malondialdehyde (MDA) content.  Peroxidase (POD), catalase (CAT), and superoxide dismutase (SOD) activities were significantly enhanced in the treatment compared to the control.  These findings indicated that the physiological and biochemical reaction changes leading to morphological and membrane injuries were the main effects of drupacine on the inhibition of seedling growth.  Drupacine can be developed as a botanical herbicide. 

Reference | Related Articles | Metrics

Establishment and evaluation of the primary cultured tibial osteoblast model of broiler chicks

CAO Su-mei, LI Ting-ting, SHAO Yu-xin, ZHAO Yu-zhen, ZHANG Li-yang, LU Lin, ZHANG Ri-jun, HOU Shui-sheng, LIAO Xiu-dong, LUO Xu-gang, WANG Run-lian
2023, 22 (2): 551-558.   DOI: 10.1016/j.jia.2022.08.051
Abstract225)      PDF in ScienceDirect      

Osteoblasts are considered as a major factor contributing to bone development and mineralization, however, few studies have been done to establish and evaluate the primary cultured tibial osteoblast model of broiler chicks.  Therefore, in the present study, two experiments were conducted to establish and evaluate the primary cultured tibial osteoblast model of broiler chicks.  In experiment 1, osteoblasts were isolated from the tibia of one-day-old Arbor Acre male broiler chicks using the explant method and identified through the cell morphology, alkaline phosphatase (ALP) and alizarin red staining.  Experiment 2 was carried out to evaluate the vitality and mineralization of primary cultured tibial osteoblasts of broilers on days 4, 8, 12, 16, 20, 24, 28 and 32 after incubation, respectively.  The results from experiment 1 demonstrated that primary cultured tibial osteoblasts of broilers showed a spindle-shaped, triangular or polygonal morphology.  More than 95% of the cells were stained blue-black after ALP staining, and mineralized nodules were formed after 4 days of continuous incubation.  in experiment 2, lactate dehydrogenase (LDH) activity stayed at a relatively stabilized level although incubation time affected (P=0.0012) it during the whole culture period.  Additionally, incubation time affected (P≤0.0001) the number and proportion of the area of mineralized nodules.  They increased linearly and quadratically (P<0.04) with the increase of incubation time, and remained at a stabilized level from 24 to 32 days of incubation.  The estimates of the optimal incubation time were 17 and 26 days based on the best fitted broken-line or quadratic models (P<0.0001) of the number and proportion of the area of mineralized nodules, respectively.  These results indicate that the primary cultured tibial osteoblast model of broilers has been established successfully by the explant method, and it showed typical osteoblast morphology and characteristics of ALP activity and mineralization, and could maintain a relatively stabilized vitality from 4 to 32 days of incubation; and the optimal incubation time of primary tibial osteoblasts was 17 to 26 days.  Therefore, it could be used to further study the underlying mechanisms of bone development and mineralization of broiler chicks.

Reference | Related Articles | Metrics
Twice-split phosphorus application alleviates low-temperature impacts on wheat by improved spikelet development and setting
XU Hui, HOU Kuo-yang, FANG Hao, LIU Qian-qian, WU Qiu, LIN Fei-fei, DENG Rui, ZHANG Lin-jie, CHEN Xiang, LI Jin-cai
2023, 22 (12): 3667-3680.   DOI: 10.1016/j.jia.2023.09.013
Abstract158)      PDF in ScienceDirect      
Extreme low-temperature incidents have become more frequent and severe as climate change intensifies.  In Huang-Huai-Hai wheat growing area of China, the late spring coldness occurring at the jointing-booting stage (the anther interval stage) has resulted in significant yield losses of winter wheat.  This study attempts to develop an economical, feasible, and efficient cultivation technique for improving the low-temperature (LT) resistance of wheat by exploring the effects of twice-split phosphorus application (TSPA) on wheat antioxidant characteristics and carbon and nitrogen metabolism physiology under LT treatment at the anther interval stage using Yannong 19 as the experimental material.  The treatments consisted of traditional phosphorus application and TSPA, followed by a –4°C LT treatment and natural temperature (NT) control at the anther interval stage.  Our analyses showed that, compared with the traditional application, the TSPA increased the net photosynthetic rate (Pn), stomatal conductance (Gs), and transpiration rate (Tr) of leaves and reduced the intercellular carbon dioxide concentration (Ci).  The activity of carbon and nitrogen metabolism enzymes in the young wheat spikes was also increased by the TSPA, which promoted the accumulation of soluble sugar (SS), sucrose (SUC), soluble protein (SP), and proline (Pro) in young wheat spike and reduced the toxicity of malondialdehyde (MDA).  Due to the improved organic nutrition for reproductive development, the young wheat spikes exhibited enhanced LT resistance, which reduced the sterile spikelet number (SSN) per spike by 11.8% and increased the spikelet setting rate (SSR) and final yield by 6.0 and 8.4%, respectively, compared to the traditional application.  The positive effects of split phosphorus application became more pronounced when the LT treatment was prolonged.  
Reference | Related Articles | Metrics
Rapid identification of Psathyrostachys huashanica Keng chromosomes in wheat background based on ND-FISH and SNP array methods
LI Jia-chuang, LI Jiao-jiao, ZHAO Li, ZHAO Ji-xin, WU Jun, CHEN Xin-hong, ZHANG Li-yu, DONG Pu-hui, WANG Li-ming, ZHAO De-hui, WANG Chun-ping, PANG Yu-hui
2023, 22 (10): 2934-2948.   DOI: 10.1016/j.jia.2023.02.001
Abstract242)      PDF in ScienceDirect      

Psathyrostachys huashanica Keng (2n=2x=14, NsNs) is regarded as a valuable wild relative species for common wheat cultivar improvement because of its abundant beneficial agronomic traits.  However, although the development of many wheat–Phuashanica-derived lines provides a germplasm base for the transfer of excellent traits, the lag in the identification of Phuashanica chromosomes in the wheat background has limited the study of these lines.  In this study, three novel nondenaturing fluorescence in situ hybridization (ND-FISH)-positive oligo probes were developed.  Among them, HS-TZ3 and HS-TZ4 could specifically hybridize with Phuashanica chromosomes, mainly in the telomere area, and HS-CHTZ5 could hybridize with the chromosomal centromere area.  We sequentially constructed a Phuashanica FISH karyotype and idiogram that helped identify the homologous groups of introduced Phuashanica chromosomes.  In detail, 1Ns and 2Ns had opposite signals on the short and long arms, 3Ns, 4Ns, and 7Ns had superposed two-color signals, 5Ns and 6Ns had fluorescent signals only on their short arms, and 7Ns had signals on the intercalary of the long arm.  In addition, we evaluated different ways to identify alien introgression lines by using low-density single nucleotide polymorphism (SNP) arrays and recommended the SNP homozygosity rate in each chromosome as a statistical pattern.  The 15K SNP array is widely applicable for addition, substitution, and translocation lines, and the 40K SNP array is the most accurate for recognizing transposed intervals between wheat and alien chromosomes.  Our research provided convenient methods to distinguish the homologous group of Phuashanica chromosomes in a common wheat background based on ND-FISH and SNP arrays, which is of great significance for efficiently identifying wheat–Phuashanica-derived lines and the further application of Ns chromosomes

Reference | Related Articles | Metrics
Effect of the gene silencing of phosphorus transporters on phosphorus absorption across primary cultured duodenal epithelial cell monolayers of chick embryos
LI Ting-ting, LU Na, SHAO Yu-xin, ZHANG Li-yang, LU Lin, LIU Zong-ping, LUO Xu-gang, LIAO Xiu-dong
2022, 21 (7): 2076-2085.   DOI: 10.1016/S2095-3119(21)63771-1
Abstract197)      PDF in ScienceDirect      
The aim of the study was to investigate whether phosphorus (P) transporters, type IIb sodium-dependent phosphate cotransporter (NaP-IIb) and inorganic phosphate transporter 2 (PiT2), were directly involved in P absorption across primary cultured duodenal epithelial cell monolayers of chick embryos.  The siRNAs against NaP-IIb or PiT2 were designed, synthesized and transfected into primary cultured duodenal epithelial cells of chick embryos.  Then, the inhibitory efficiency of siRNAs against NaP-IIb or PiT2 was analyzed, and the most efficacious siRNAs were selected to be used for subsequent P absorption experiments.  Briefly, primary cultured duodenal epithelial cells of chick embryos were transfected with either NaP-IIb or PiT2 siRNAs and grown in confluent monolayers on transwell plates.  The untransfected or transfected cell monolayers were then incubated in an uptake medium containing 0 or 0.25 mmol L–1 of P as KH2PO4 to measure the P absorption across duodenal epithelial cell monolayers.  The results showed that among the siRNAs designed, si-1372 and si-890 were demonstrated to be the most effective in inhibiting the NaP-IIb and PiT2 expressions, respectively.  Supplemental P increased (P=0.065) the protein abundance of PiT2 and enhanced (P<0.0001) P absorption in primary cultured duodenal epithelial cell of chick embryos.  Furthermore, NaP-IIb silencing decreased (P=0.07) P absorption across duodenal epithelial cell monolayers, while PiT2 silencing had no effect (P=0.345).  It is concluded that the NaP-IIb, but not PiT2, might be directly involved in the P absorption of chick duodenal epithelial cells.
Reference | Related Articles | Metrics
Genome-wide identification, evolutionary selection, and genetic variation of DNA methylation-related genes in Brassica rapa and Brassica oleracea
AN Feng, ZHANG Kang, ZHANG Ling-kui, LI Xing, CHEN Shu-min, WANG Hua-sen, CHENG Feng
2022, 21 (6): 1620-1632.   DOI: 10.1016/S2095-3119(21)63827-3
Abstract213)      PDF in ScienceDirect      
DNA methylation plays an important role in plant growth and development, and in regulating the activity of transposable elements (TEs).  Research on DNA methylation-related (DMR) genes has been reported in Arabidopsis, but little research on DMR genes has been reported in Brassica rapa and Brassica oleracea, the genomes of which exhibit significant differences in TE content.  In this study, we identified 78 and 77 DMR genes in Brassica rapa and Brassica oleracea, respectively.  Detailed analysis revealed that the numbers of DMR genes in different DMR pathways varied in B. rapa and B. oleracea.  The evolutionary selection pressure of DMR genes in B. rapa and B. oleracea was compared, and the DMR genes showed differential evolution between these two species.  The nucleotide diversity (π) and selective sweep (Tajima’s D) revealed footprints of selection in the B. rapa and B. oleracea populations.  Transcriptome analysis showed that most DMR genes exhibited similar expression characteristics in B. rapa and B. oleracea.  This study dissects the evolutionary differences and genetic variations of the DMR genes in B. rapa and B. oleracea, and will provide valuable resources for future research on the divergent evolution of DNA methylation between B. rapa and B. oleracea.
Reference | Related Articles | Metrics
The GhMAX2 gene regulates plant growth and fiber development in cotton
HE Peng, ZHANG Hui-zhi, ZHANG Li, JIANG Bin, XIAO Guang-hui, YU Jia-ning
2022, 21 (6): 1563-1575.   DOI: 10.1016/S2095-3119(21)63603-1
Abstract284)      PDF in ScienceDirect      
Strigolactones (SLs) are a new type of plant endogenous hormones that have been found to regulate plant growth and architecture.  At present, some genes related to the biosynthesis and signaling pathway of SLs have been isolated in plants such as Arabidopsis thaliana, Pisum sativum and Oryza sativa.  However, the signaling pathway and specific mechanism of SLs in cotton remain unclear.  In this study, we identified the SLs signaling gene GhMAX2 and demonstrated its function in plant growth and architecture in Gossypium hirsutum.  Bioinformatics analysis showed that GhMAX2 mainly consists of an α-helix and a random coil and includes a large number of leucine-rich repeats.  GhMAX2 was highly expressed in root, stem, flower, and fibers at 20 days post-anthesis (DPA).  GhMAX2 promoter-driven β-glucuronidase expression was present exclusively in the root, main inflorescence, flower, and silique.  Subcellular localization showed that GhMAX2 is targeted to the nucleus.  Heterologously expressed GhMAX2 can rescue the phenotype of Arabidopsis max2-1 mutant, indicating that the function of MAX2 is highly conserved between G. hirsutum and A. thaliana species.  In addition, the knockdown expression of GhMAX2 in cotton resulted in significantly reduced plant height, slow growth, short internodes, and reduced fiber length.  These findings indicate that GhMAX2 probably contributes to plant growth, architecture and fiber elongation in cotton. The study reveals insights into the roles of GhMAX2-mediated SL/KAR signaling in cotton and provides a valuable foundation for the cultivation of cotton plants in the future.
Reference | Related Articles | Metrics
The impact of tandem duplication on gene evolution in Solanaceae species
HUANG Yi-le, ZHANG Ling-kui, ZHANG Kang, CHEN Shu-min, HU Jian-bin, CHENG Feng
2022, 21 (4): 1004-1014.   DOI: 10.1016/S2095-3119(21)63698-5
Abstract300)      PDF in ScienceDirect      
Whole genome duplication (WGD) and tandem duplication (TD) are important modes of gene amplification and functional innovation, and they are common in plant genome evolution.  We analyzed the genomes of three Solanaceae species (Solanum lycopersicum, Capsicum annuum, and Petunia inflata), which share a common distant ancestor with Vitis vinifera, Theobroma cacao, and Coffea canephora but have undergone an extra whole genome triplication (WGT) event.  The analysis was used to investigate the phenomenon of tandem gene evolution with (S. lycopersicum) or without WGT (V. vinifera).  Among the tandem gene arrays in these genomes, we found that V. vinifera, which has not experienced the WGT event, retained relatively more and larger tandem duplicated gene (TDG) clusters than the Solanaceae species that experienced the WGT event.  Larger TDG clusters tend to be derived from older TD events, so this indicates that continuous TDGs (absolute dosage) accumulated during long-term evolution.  In addition, WGD and TD show a significant bias in the functional categories of the genes retained.  WGD tends to retain dose-sensitive genes related to biological processes, including DNA-binding and transcription factor activity, while TD tends to retain genes involved in stress resistance.  WGD and TD also provide more possibilities for gene functional innovation through gene fusion and fission.  The TDG cluster containing the tomato fusarium wilt resistance gene I3 contains 15 genes, and one of these genes, Solyc07g055560, has undergone a fusion event after the duplication events.  These data provide evidence that helps explain the new functionalization of TDGs in adapting to environmental changes.  
Reference | Related Articles | Metrics
Grain zinc and iron concentrations of Chinese wheat landraces and cultivars and their responses to foliar micronutrient applications
JIANG Li-na, MA Jing-li, WANG Xiao-jie, LIU Gang-gang, ZHU Zhao-long, QI Chen-yang, ZHANG Ling-fang, LI Chun-xi, WANG Zhi-min, HAO Bao-zhen
2022, 21 (2): 532-541.   DOI: 10.1016/S2095-3119(21)63614-6
Abstract232)      PDF in ScienceDirect      
Grain zinc (Zn) and iron (Fe) concentrations and their responses to foliar application of micronutrients in 28 Chinese wheat landraces and 63 cultivars were investigated in a two-year field experiment.  The average grain Zn and Fe concentrations were 41.8 mg kg–1 (29.0−63.3 mg kg–1) and 39.7 mg kg–1 (27.9−67.0 mg kg–1), respectively.  Compared with cultivars, landraces had greater grain Zn (11.0%) and Fe (4.8%) concentrations but lower harvest index (HI), grain weight per spike (GWS), grain number per spike (GNS) and thousand grain weight (TGW).  Both Zn and Fe concentrations were negatively and significantly correlated with HI, GWS, and GNS, while showed a poor association with TGW, suggesting that lower HI, GWS, and GNS, but not TGW, accounted for higher Zn and Fe concentrations for landraces than for cultivars.  Grain Zn concentrations of both cultivars and landraces significantly increased after foliar Zn spray and the increase was two-fold greater for landraces (12.6 mg kg–1) than for cultivars (6.4 mg kg–1).  Foliar Fe spray increased grain Fe concentrations of landraces (3.4 mg kg–1) and cultivars (1.2 mg kg–1), but these increases were not statistically significant.  This study showed that Chinese wheat landraces had higher grain Zn and Fe concentrations than cultivars, and greater increases occurred in grain Zn concentration than in grain Fe concentration in response to fertilization, suggesting that Chinese wheat landraces could serve as a potential genetic source for enhancing grain mineral levels in modern wheat cultivars.

Reference | Related Articles | Metrics
Co-silencing E1 and its homologs in an extremely late-maturing soybean cultivar confers super-early maturity and adaptation to high-latitude short-season regions
LIU Li-feng, GAO Le, ZHANG Li-xin, CAI Yu-peng, SONG Wen-wen, CHEN Li, YUAN Shan, WU Ting-ting, JIANG Bing-jun, SUN Shi, WU Cun-xiang, HOU Wen-sheng, HAN Tian-fu
2022, 21 (2): 326-335.   DOI: 10.1016/S2095-3119(20)63391-3
Abstract229)      PDF in ScienceDirect      
Soybean (Glycine max (L.) Merr.), a typical short-day plant, is sensitive to photoperiod, which limits the geographical range for its cultivation.  In the flowering pathway regulated by photoperiod, E1, a flowering inhibitor in soybean, plays the dominant role in flowering time regulation.  Two E1 homologs, E1-like-a (E1La) and E1-like-b (E1Lb), play overlapping or redundant roles in conjunction with E1.  In the present study, E1 and E1La/b were simultaneously silenced via RNA interference (RNAi) in Zigongdongdou (ZGDD), an extremely late-flowering soybean landrace from southern China.  As a result, RNAi lines showed a much earlier-flowering phenotype and obvious photoperiod insensitivity compared with wild-type (WT) plants.  In RNAi transgenic plants, the expression levels of flowering inhibitor GmFT4 and flowering promoters GmFT2a/GmFT5a were significantly down- and up-regulated, respectively.  Further, the maturity group (MG) of the RNAi lines was reduced from WT ZGDD’s MG VIII (extremely late-maturity) to MG 000 (super-early maturity), which can even grow in the northernmost village of China located at a latitude of 53.5°N.  Our study confirms that E1 and E1La/b can negatively regulate flowering time in soybean.  The RNAi lines generated in this study, with early flowering and maturity traits, can serve as valuable materials and a technical foundation for breeding soybeans that are adapted to high-latitude short-season regions.
Reference | Related Articles | Metrics

Genome-wide detection for runs of homozygosity analysis in three pig breeds from Chinese Taihu Basin and Landrace pigs by SLAF-seq data

TONG Shi-feng, ZHU Mo , XIE Rui , LI Dong-feng , ZHANG Li-fan , LIU Yang
2022, 21 (11): 3293-3301.   DOI: 10.1016/j.jia.2022.08.061
Abstract319)      PDF in ScienceDirect      


Erhualian (E), Meishan (MS) and Mi (MI) pigs are excellent indigenous pig breeds in Chinese Taihu Basin, which have made great contributions to the genetic improvement of commercial pigs.  Investigation of the genetic structure and inbreeding level of the 3 pig breeds is of great significance for the sustainable breeding of commercial pigs.  The length and number of runs of homozygosity (ROH) as well as the frequency of genomes covered by ROH can be used as indicators to evaluate the level of inbreeding and the origin of the population.  In this study, the ROH characteristics of E, MS, MI and Landrace (L) pigs were analyzed by SLAF-seq data, and the inbreeding coefficient based on ROH (FROH) was calculated.  In addition, we have identified candidate genes in the genomic regions associated with ROH.  A total of 10 568 ROH were detected in 116 individuals of 4 pig breeds.  The analysis showed that there were significant differences in genetic structure between 3 Taihu Basin pig breeds and L, and the genetic structure of E and MI was similar.  The results of FROH showed that the inbreeding level of MS was the highest (0.25±0.07), while E and MI were lower than L.  Compared with the other 3 pig populations, MS showed a higher frequency of long ROH (>5 Mb), indicating higher inbreeding in MS in recent generations.  A large number of candidate genes related to reproductive traits are located in the genomic regions with a high frequency of ROH, and these genes are expected to be used as candidate genes in marker-assisted selection (MAS) breeding programs.  Our findings can provide theoretical support for genetic conservation and genetic improvement of 3 pig breeds in Chinese Taihu Basin.



Reference | Related Articles | Metrics
Regulation of bone phosphorus retention and bone development possibly by BMP and MAPK signaling pathways in broilers
LIAO Xiu-dong, CAO Su-mei, LI Ting-ting, SHAO Yu-xin, ZHANG Li-yang, LU Lin, ZHANG Ri-jun, HOU Shui-sheng, LUO Xu-gang
2022, 21 (10): 3017-3025.   DOI: 10.1016/j.jia.2022.07.037
Abstract224)      PDF in ScienceDirect      

The bone morphogenetic protein (BMP) and mitogen-activated protein kinase (MAPK) signaling pathways play an important role in regulation of bone formation and development, however, it remains unclear that the effect of dietary different levels of non-phytate phosphorus (NPP) on these signaling pathways and their correlations with bone phosphorus (P) retention and bone development in broilers.  Therefore, this experiment was conducted to investigate the effect of dietary P supplementation on BMP and MAPK signaling pathways and their correlations with bone P retention and bone development in broilers.  A total of 800 one-day-old Arbor Acres male broilers were randomly allotted to 1 of 5 treatments with 8 replicates in a completely randomized design.  The 5 treatments of dietary NPP levels were 0.15, 0.25, 0.35, 0.45 and 0.55% or 0.15, 0.22, 0.29, 0.36 and 0.43% for broilers from 1 to 21 days of age or 22 to 42 days of age, respectively.  The results showed that extracellular signal-regulated kinase 1 (ERK1) mRNA expression in the tibia of broilers on days 14 and 28, phosphorylated-ERK1 (p-ERK1) on day 14, and BMP2 protein expression on days 28 and 42 decreased linearly (P<0.04), while c-Jun N-terminal kinase 1 (JNK1) mRNA expression on day 42 increased linearly (P<0.02) with the increase of dietary NPP level.  At 14 days of age, total P accumulation in tibia ash (TPTA), bone mineral concentration (BMC), bone mineral density (BMD), bone breaking strength (BBS) and tibia ash were negatively correlated (r=–0.726 to –0.359, P<0.05) with ERK1 and JNK1 mRNA as well as p-ERK1; tibia alkaline phosphatase (ALP) and bone gal protein (BGP) were positively correlated (r=0.405 to 0.665, P<0.01) with ERK1 mRNA and p-ERK1.  At 28 days of age, TPTA, BMC, BMD, BBS and tibia ash were negatively correlated (r=–0.518 to –0.370, P<0.05) with ERK1 mRNA and BMP2 protein, while tibia ALP was positively correlated (r=0.382 to 0.648, P<0.05) with them.  The results indicated that TPTA, BMC, BMD, BBS or tibia ash had negative correlations, while tibia ALP and BGP had positive correlations with ERK1 and JNK1 mRNAs, BMP2 protein and p-ERK1, suggesting that bone P retention and bone development might be regulated by BMP and MAPK signaling pathways in broiler chickens.

Reference | Related Articles | Metrics
A fragment of a 70-kDa Heterodera glycines heat shock protein (HgHSP70) interacts with soybean cyst nematode-resistant protein GmSHMT08
LIU Zhi, ZHANG Liu-ping, ZHAO Jie, JIAN Jin-zhuo, PENG Huan, HUANG Wen-kun, KONG Ling-an, PENG De-liang, LIU Shi-ming
2022, 21 (10): 2973-2983.   DOI: 10.1016/j.jia.2022.07.048
Abstract228)      PDF in ScienceDirect      


Soybean cyst nematode (SCN) Heterodera glycines is considered as the major constraint to soybean production.  GmSHMT08 at Rhg4 locus on chromosome 08, encoding a serine hydroxylmethyltransferase, is a major gene underlying resistance against Hglycines in Peking-type soybeans.  However, the molecular mechanism underpinning this resistance is less well characterized, and whether GmSHMT08 could interact with proteins in Hglycines remains unclear.  In this study, yeast two-hybrid screening was conducted using GmSHMT08 as a bait protein, and a fragment of a 70-kDa heat shock protein (HgHSP70) was screened from Hglycines that exhibited interaction with GmSHMT08.  This interaction was verified by both GST pull-down and bimolecular fluorescence complementation assays.  Our finding reveals HgHSP70 could be applied as a potential candidate gene for further exploring the mechanism on GmSHMT08-mediated resistance against SCN Hglycines.


Reference | Related Articles | Metrics
Effect of various combinations of temperature during different phenolgical stages on indica rice yield and quality in Yangtze River Basin in China
TU De-bao JIANG Yang, ZHANG Li-juan, CAI Ming-li, LI Cheng-fang, CAO Cou-gui
2022, 21 (10): 2900-2909.   DOI: 10.1016/j.jia.2022.07.056
Abstract201)      PDF in ScienceDirect      
Rice grain yield and quality declines are due to unsuitable temperatures from wide regions and various sowing dates.  This study aimed to evaluate the effects of temperature on rice yield and quality at different phenological periods and obtain suitable temperatures for phenological periods in the Yangtze River Basin, China.  This study conducted experiments on different sowing dates under different areas in the Yangtze River Basin to observe and compare the differences in rice growth, yield, and quality, controlling for regional varieties.  The results showed significant differences in rice growth, yield, and quality among sowing dates and areas, which were related to the average daily temperature during the vegetative period (VT) and the first 20 days of the grain-filling period (GT20).  In addition, there was a smaller variation in the average daily temperature in the reproductive period (RT) than in the two phenological periods.  Therefore, according to the VT and GT20 thresholds of different yields and qualities, the experimental results were divided into four scenarios (I, II, III, and IV) in this study.  In Scenario I, high head rice production (rice grain yield multiplied by head rice rate) and rice quality could be obtained.  The head rice production of Scenarios III and IV was lower than that of Scenario I, by 30.1 and 27.6%, respectively.  In Scenario II, the head rice production increased insignificantly while the chalky grain rate and chalkiness were 50.6 and 56.3% higher than those of Scenario I.  In conclusion, the Scenario I combination with VT ranges of 22.8–23.9°C and GT20 ranges of 24.2–27.0°C or the combination with VT ranges of 23.9–25.3°C and GT20 ranges of 24.2–24.9°C, which can be obtained by adjusting sowing date and selecting rice varieties with suitable growth periods, is recommended to achieve high levels of rice grain yield and quality in the Yangtze River Basin. 
Reference | Related Articles | Metrics
Effect of harvest time on the chemical composition and antioxidant capacity of Gannan navel orange (Citrus sinensis L. Osbeck ‘Newhall’) juice
ZHANG Jun, ZHANG Jing-yi, SHAN You-xia, GUO Can, HE Lian, ZHANG Lin-yan, LING Wei, LIANG Yan, ZHONG Ba-lian
2022, 21 (1): 261-272.   DOI: 10.1016/S2095-3119(20)63395-0
Abstract262)      PDF in ScienceDirect      
The present study investigates the chemical composition and antioxidant capacity of juice from the Gannan navel orange, which is harvested at one- to two-week intervals during the ripening period.  The total soluble solid (TSS), total polyphenol content (TPC), total flavonoid content (TFC), sucrose and hesperidin contents gradually increase with the ripening of the fruit, followed by slight declines at the late maturity stage.  Contrary to these observations, the contents of titratable acid (TA), vitamin C (Vc), and limonin trend downward throughout the ripening period.  However, the contents of fructose, glucose, and narirutin fluctuate throughout the harvest time.  Three in vitro antioxidant assays consistently indicate that the harvest time exerts no significant influence (P>0.01) on the antioxidant capacity.  Furthermore, principal component analysis (PCA) and Pearson’s correlation test are performed to provide an overview of the complete dataset. This study provides valuable information for evaluating the fruit quality and determining when to harvest the fruit in order to meet the preferences of consumers.  Meanwhile, our observations suggest that the fruits subjected to juice processing should be harvested at the late maturity stage to alleviate the “delayed bitterness” problem without compromising the antioxidant capacity and the flavonoid content in the juice.
Reference | Related Articles | Metrics
Analysis of combining ability for stem-related traits and its correlations with lodging resistance heterosis in hybrid wheat
YANG Wei-bing, QIN Zhi-lie, SUN Hui, HOU Qi-ling, GAO Jian-gang, CHEN Xian-chao, ZHANG Li-ping, WANG Yong-bo, ZHAO Chang-ping, ZHANG Feng-ting
2022, 21 (1): 26-35.   DOI: 10.1016/S2095-3119(20)63408-6
Abstract243)      PDF in ScienceDirect      
With the application of hybrid wheat, lodging is becoming one of the major factors limiting high yield in its production.  However, few studies have focused on combining ability and heterosis analysis of stem-related traits.  In this study, 24 crosses were made according to NCII genetic design, using the three (photo-sensitive male sterile lines)×eight (restorer lines) incomplete diallel crosses.  The length of basal second internode (LBSI) and breaking strength of basal second internode (BSBSI) as well as other stem-related traits were used to perform the principal component analysis (PCA), combining ability and heterosis analysis.  The PCA results showed that the variables could be classified into two main factors, which were named as the positive factor (factor 1) and the negative factor (factor 2), and accounted for 52.3 and 33.2%, respectively, of the total variance in different variables, combined with the analysis for index weight indicated that the factor 1-related traits play positive roles in lodging resistance formation of hybrids.  Combining ability variance analysis indicated that its genetic performance was mainly dominated by additive gene effects, and the hybrid combinations with higher lodging resistance can be selected by using of 14GF6085 (R1), 14GF6343-2 (R4), 14GF6937 (R6), 14GF7433-1 (R7), and BS1086 (M3), which are with the features with lower general combining ability (GCA) effects of factor 2-related traits whereas higher GCA effects of factor 1-related traits.  The heterosis analysis showed that the wide range of heterosis varied with the traits and combinations, and GCA or specific combining ability (SCA) effects of factor 1-related traits except wall thickness of basal second internode (WTBSI) were positively and closely related to the heterosis of lodging resistance.  Generally, the correlation coefficients of heterosis to GCA effects of sterile lines (GCAm) of factor 1-related traits are significantly higher than that to GCA of restorer lines (GCAr) and SCA, combined with the higher GCAm variance values of factor 1-related traits compared to GCAr, the GCAm of factor 1-related traits should be particularly considered when breeding hybrid combinations.  The heritability analysis showed that the narrow-sense heritability of the diameter of basal second internode (DBSI) and the center of gravity height (TCGH) were obviously lower (<60%) than other traits, suggesting that these two traits were suitable for selection in higher generation for parental breeding.  These could provide a theoretical basis for parental breeding and heterosis utilization of lodging resistance. 

Reference | Related Articles | Metrics
Variation of carbon partitioning in newly expanded maize leaves and plant adaptive growth under extended darkness
LIANG Xiao-gui, SHEN Si, GAO Zhen, ZHANG Li, ZHAO Xue, ZHOU Shun-li
2021, 20 (9): 2360-2371.   DOI: 10.1016/S2095-3119(20)63351-2
Abstract142)      PDF in ScienceDirect      
Plants must maintain a balance between their carbon (C) supply and utilization during the day–night cycle for continuous growth since C starvation often causes irreversible damage to crop production.  It is not well known how C fixation and allocation in the leaves of crops such as maize adapt to sudden environmental changes.  Here, to quantify primary C fixation and partitioning in photosynthetic maize leaves under extended darkness and to relate these factors to plant growth, maize seedlings were subjected to extended darkness (ED) for three successive days at the 6th leaf fully expanded stage (V6).  ED reduced plant growth and leaf chlorophyll levels but not the rate of net CO2 exchange.  As a result of the reduction in photoassimilates, the accumulation of starch and total soluble carbohydrates (TSC) in mature leaves also decreased under ED.  However, the percentage of the daily C fixation reserved in mature leaves increased.  These transient C pools were largely composed of TSC and were mainly used for consumption by increased nocturnal respiration rather than for transport.  As the days went on, both the amount of C accumulated and the percentage of the daily fixed C that was reserved in leaves decreased, which could be largely accounted for by the attenuated starch synthesis in all treatments.  The activities of ADP-glucose pyrophosphorylase and soluble starch synthase decreased significantly over time.  Therefore, this study concluded that both starch and TSC are involved in the coordination of the C supply and plant growth under a sudden C shortage but that they may be involved in different ways.  While the ratio of reserved C to daily fixed C increased to maintain blade function under acute C starvation, both the amount and the proportion of C reserved in mature leaves decreased as plant growth continued in order to meet the growth demands of the plant.
 
Reference | Related Articles | Metrics
Integrating the physical and genetic map of bread wheat facilitates the detection of chromosomal rearrangements
ZHAO Lai-bin, XIE Die, HUANG Lei, ZHANG Shu-jie, LUO Jiang-tao, JIANG Bo, NING Shun-zong, ZHANG Lian-quan, YUAN Zhong-wei, WANG Ji-rui, ZHENG You-liang, LIU Deng-cai, HAO Ming
2021, 20 (9): 2333-2342.   DOI: 10.1016/S2095-3119(20)63289-0
Abstract118)      PDF in ScienceDirect      
The bread wheat genome harbors a high content of repetitive DNA, which is amenable to detection and characterization using fluorescence in situ hybridization (FISH) karyotyping.  An integrated genetic map was derived from a recombinant inbred population bred from a cross between a synthetic hexaploid wheat and a commercial Chinese bread wheat cultivar, based on 28 variable FISH sites and >150 000 single nucleotide polymorphism (SNP) loci.  The majority (20/28) of the variable FISH sites were physically located within a chromosomal region consistent with the genetic location inferred from that of their co-segregating SNP loci.  The eight exceptions reflected the presence of either a translocation (1R/1B, 1A/7A) or a presumptive intra-chromosomal inversion (4A).  For eight out of the nine FISH sites detected on the Chinese Spring (CS) karyotype, there was a good match with the reference genome sequence, indicating that the most recent assembly has dealt well with the problem of placing tandem repeats.  The integrated genetic map produced for wheat is informative as to the location of blocks of tandemly repeated DNA and can aid in improving the quality of the genome sequence assembly in regions surrounding these blocks.
 
Reference | Related Articles | Metrics
Improving grain appearance of erect-panicle japonica rice cultivars by introgression of the null gs9 allele
ZHAO Dong-sheng, LIU Jin-yu, DING Ai-qiu, ZHANG Tao, REN Xin-yu, ZHANG Lin, LI Qian-feng, FAN Xiao-lei, ZHANG Chang-quan, LIU Qiao-quan
2021, 20 (8): 2032-2042.   DOI: 10.1016/S2095-3119(21)63659-6
Abstract201)      PDF in ScienceDirect      
The panicle architecture and grain size of rice affect not only grain yield but also grain quality, especially grain appearance. The erect-panicle (EP) trait controlled by the qpe9-1/dep1 allele has been widely used in high-yielding japonica rice breeding, but usually accompanied with moderate appearance of milled rice. The null gs9 allele shows a good potential for improving grain shape and appearance. However, GS9 and qPE9-1/DEP1 loci are tightly linked, and their interaction is unclear, which obviously restricts their utilization in modern rice breeding. In the present study, comparative analyses of protein and mRNA levels revealed that GS9 and qPE9-1 function independently. Three near-isogenic lines (NILs) carrying various allelic combinations of these two loci, NIL (gs9/qpe9-1), NIL (GS9/qPE9-1) and NIL (gs9/qPE9-1), in the EP japonica cultivar 2661 (GS9/qpe9-1) background were developed for genetic interaction analysis. GS9 and qPE9-1 had additive effects on determining grain size, and the null gs9 allele could decrease grain chalkiness and improve grain appearance without affecting plant and panicle architecture in EP japonica cultivars. Additionally, introgression lines (ILs) developed in another released EP japonica cultivar Wuyujing 27 (WYJ27) background showed the same additive effect and the feasibility of utilizing the gs9 allele to improve grain appearance quality in high-yielding EP cultivars. This study provides an effective strategy for rice breeders to improve rice grain appearance in EP japonica and related cultivars.
Reference | Related Articles | Metrics
Functional analysis of the orphan genes Tssor-3 and Tssor-4 in male Plutella xylostella
LI Tian-pu, ZHANG Li-wen, LI Ya-qing, YOU Min-sheng, ZHAO Qian
2021, 20 (7): 1880-1888.   DOI: 10.1016/S2095-3119(21)63655-9
Abstract137)      PDF in ScienceDirect      
Orphan genes are genes with no sequence homologues in other species.  Here, we identified two orphan genes, namely, Tssor-3 and Tssor-4, in Plutella xylostella.  Both genes contained a signal peptide sequence, suggesting their functions as secreted proteins.  Expression pattern analysis based on real-time quantitative PCR (qPCR) showed that both orphan genes were specifically expressed in all male gonads except the testes.  The expression of both the orphan genes peaked at the male adult stage.  Immunofluorescence assays suggested that the two proteins were seminal proteins, indicating their potential roles in male reproductive regulation.  To further explain their functions, we knocked down the expression of these two genes by RNA interference (RNAi).  The results showed that the expression of Tssor-3 and Tssor-4 was significantly downregulated at 24 h after injection compared to that of the controls.  Biological assays showed that the number of laid eggs and the hatching rate of offspring eggs were significantly reduced when the expression of Tssor-3 and Tssor-4 was reduced, suggesting that the two orphan genes played a role in male fertility in P. xylostella.  Our results provide evidence that orphan genes are involved in male reproductive regulation, which is important for male fitness during evolution.
Reference | Related Articles | Metrics
The water-saving potential of using micro-sprinkling irrigation for winter wheat production on the North China Plain
ZHAI Li-chao, Lü Li-hua, DONG Zhi-qiang, ZHANG Li-hua, ZHANG Jing-ting, JIA Xiu-ling, ZHANG Zheng-bin
2021, 20 (6): 1687-1700.   DOI: 10.1016/S2095-3119(20)63326-3
Abstract175)      PDF in ScienceDirect      
The shortage of groundwater resources is a considerable challenge for winter wheat production on the North China Plain.  Water-saving technologies and procedures are thus urgently required.  To determine the water-saving potential of using micro-sprinkling irrigation (MSI) for winter wheat production, field experiments were conducted from 2012 to 2015.  Compared to traditional flooding irrigation (TFI), micro-sprinkling thrice with 90 mm water (MSI1) and micro-sprinkling four times with 120 mm water (MSI2) increased the water use efficiency by 22.5 and 16.2%, respectively, while reducing evapotranspiration by 17.6 and 10.8%.  Regardless of the rainfall pattern, MSI (i.e., MSI1 or MSI2) either stabilized or significantly increased the grain yield, while reducing irrigation water volumes by 20–40%, compared to TFI.  Applying the same volumes of irrigation water, MSI (i.e., MSI3, micro-sprinkling five times with 150 mm water) increased the grain yield and water use efficiency of winter wheat by 4.6 and 11.7%, respectively, compared to TFI.  Because MSI could supply irrigation water more frequently in smaller amounts each time, it reduced soil layer compaction, and may have also resulted in a soil water deficit that promoted the spread of roots into the deep soil layer, which is beneficial to photosynthetic production in the critical period.  In conclusion, MSI1 or MSI2 either stabilized or significantly increased grain yield while reducing irrigation water volumes by 20–40% compared to TFI, and should provide water-saving technological support in winter wheat production for smallholders on the North China Plain.
Reference | Related Articles | Metrics
Dynamics of microbial diversity during the composting of agricultural straw
CHANG Hui-qing, ZHU Xiao-hui, WU Jie, GUO Da-yong, ZHANG Lian-he, FENG Yao
2021, 20 (5): 1121-1136.   DOI: 10.1016/S2095-3119(20)63341-X
Abstract128)      PDF in ScienceDirect      
The dynamic changes in microbial diversity during the aerobic composting of agricultural crop straw with additives were evaluated using high-throughput sequencing at four phases of composting (mesophilic, thermophilic, cooling and maturation phases).  In addition, the physicochemical parameters of the composting system were determined in this study.  The fermentation time of the thermophilic period was prolonged with the addition of urea or urea combined with a microbial agent.  The ratio of C/N and germination index variation indicated that the additives were favorable for composting, because the additives directly changed the physicochemical properties of the compost and had effects on the diversity and abundance of bacteria and fungi.  The abundance of operational taxonomic units (OTUs), diversity index (Shannon) and richness index (Chao1) of fungi and bacteria were found to significantly increase when urea+microbial agents  were added to straw in the thermophilic phase.  The relative abundance of the predominant bacteria and fungi at the phylum and genus levels differed during different composting phases.  The abundance of the phyla Firmicutes and Proteobacteria declined in the order of treatments SNW>SN>S (S is straw only compost; SN is straw+5 kg t–1 urea compost; and SNW is straw+5 kg t–1 urea+1 kg t–1 microbial agent compost) in the thermophilic phase.  The abundance of the genera Staphylococcus, Bacillus and Thermobifida followed the same order in the mesophilic phase.  Ascomycota accounted for more than 92% of the total fungal sequences.  With the progression of the composting process, the abundance of Ascomycota decreased gradually.  The abundance of Ascomycota followed the order of S>SN>SNW during the thermophilic phase.  The abundance of Aspergillus accounted for 4–59% of the total abundance of fungi and increased during the first two sampling periods.  Aspergillus abundance followed the order of SNW>SN>S.  Additionally, principal component analysis (PCA) revealed that the community compositions in the straw and straw+urea treatments were similar, and that the bacterial communities in treatments S, SN and SNW in the mesophilic phase (at day 1) were different from those observed in three other phases (at days 5, 11, and 19, respectively), while the fungal communities showed only slight variations in their structure in response to changes in the composting process.  Canonical correlation analysis (CCA) and redundancy analysis (RDA) showed that total carbon (TC), NO3-N (NN), electrical conductivity (EC) and pH were highly correlated with community composition.  Therefore, this study highlights that the additives are beneficial to straw composting and result in good quality compost.
 
Reference | Related Articles | Metrics
The power of informal institutions: The impact of clan culture on the depression of the elderly in rural China
LIU Xiao-hong, WANG Wei-dong, ZHANG Lin-xiu
2021, 20 (4): 1107-1118.   DOI: 10.1016/S2095-3119(21)63626-2
Abstract139)      PDF in ScienceDirect      
Exploration of ways to improve the subjective welfare of residents is an important area of current academic research.  Using data from the China Family Panel Studies survey conducted in 2010, this paper investigated the impact of clan culture on the mental health of elderly people in rural China.  The results demonstrated that clan culture can significantly decrease the depression score of the rural elderly.  Further, there was no gender difference with respect to the impact of clan culture on the depression score of the elderly.  At the same time, the positive effects of clan culture on the depression score of the elderly have gradually weakened with economic development.  Exploration of the mechanisms involved indicated that in areas with stronger clan culture, older people receive more social support.  This study enriches our understanding of the impact of informal institutions on the welfare of rural residents.  At the same time, it can also provide a certain decision-making reference for the government to formulate relative poverty relief strategies in a new stage of poverty alleviation.
Reference | Related Articles | Metrics
Status and path of intergenerational transmission of poverty in rural China: A human capital investment perspective
BAI Yun-li, ZHANG Lin-xiu, SUN Ming-xing, XU Xiang-bo
2021, 20 (4): 1080-1091.   DOI: 10.1016/S2095-3119(20)63373-1
Abstract194)      PDF in ScienceDirect      
This paper focused on the intergenerational transmission of poverty in rural China by estimating the intergenerational transmission of earnings and stated its mechanism from the perspective of human capital investment before children participated in the labor market.  The data used in this study were longitude data collected in 2 000 households of 100 villages among 25 counties across five provinces in 2005, 2008, 2012, 2016, and 2019.  Qualitative and quantitative methods were adopted.  We found a significant intergenerational transmission of earnings in rural China, especially for the pairs of father–children and parents–children.  The intergenerational earnings’ elasticities were much less than those in urban areas, which indicated better social mobility in rural areas than that in urban China.  The children with parents who could earn much were more likely to be invested before they participated in the labor market, gain a high education and have more skills.  Three cases further showed that the mechanism of human capital investment in children breaking the intergenerational transmission of poverty and promoting social mobility.
Related Articles | Metrics
Off-farm employment and poverty alleviation in rural China
LI Shao-ping, DONG Yong-qing, ZHANG Lin-xiu, LIU Cheng-fang
2021, 20 (4): 943-952.   DOI: 10.1016/S2095-3119(21)63616-X
Abstract138)      PDF in ScienceDirect      
Two phenomena in the history of China’s economic growth during the last four decades are the increase in the share of off-farm employment and the progress in poverty alleviation in rural China.  Although both of them have been well documented in the literature, less is known about the linkage between the two.  To better understand the role that off-farm employment has played in poverty alleviation in rural China is critically important not only for China but also for those countries that are trying to reduce poverty.  Here, we examine the impact of off-farm employment on poverty alleviation in rural China.  Using the data from two nationally representative household panel surveys (China National Rural Survey and China Rural Development Survey), this paper provides supporting evidence that off-farm employment contributes to poverty alleviation in rural China.  Specifically, if household participation in off-farm employment increases by 10 percentage points, the likelihood for a non-poor household to fall into poverty will decrease by 0.88 percentage point whereas the likelihood for a poor household to climb out of poverty will increase by 3.5 percentage points.  In a word, off-employment can not only prevent rural residents to fall into poverty but also help those already in poverty climb out of it.
Reference | Related Articles | Metrics
The putative elongator complex protein Elp3 is involved in asexual development and pathogenicity by regulating autophagy in the rice blast fungus
ZHANG Li-mei, CHEN Shu-ting, QI Min, CAO Xue-qi, LIANG Nan, LI Qian, TANG Wei, LU Guo-dong, ZHOU Jie, YU Wen-ying, WANG Zong-hua, ZHENG Hua-kun
2021, 20 (11): 2944-2956.   DOI: 10.1016/S2095-3119(20)63493-1
Abstract103)      PDF in ScienceDirect      
 
Autophagy is responsible for maintaining fundamental cellular homeostasis and is, therefore, essential for diverse development processes.  This study reported that PoElp3, the putative catalytic subunit of Elongator complex, is involved in the maintenance of autophagy homeostasis to facilitate asexual development and pathogenicity in the rice blast fungus Pyricularia oryzae.  It was found that the ΔPoelp3 strains were defective in vegetative growth, conidiation, stress response, and pathogenicity.  The mutants exhibited hyper-activated autophagy in the vegetative hyphae under both nutrient-rich and nutrient-deficient conditions.  The hyper-activation of autophagy possibly suppressed the production of vegetative hyphae in the ΔPoelp3 strains.  Moreover, the ΔPoelp3 strains were found to be more sensitive to rapamycin during vegetative- and invasive-hyphal growth but have no effect on Target-of-Rapamycin (TOR) signaling inhibition.  Taken together, these results demonstrated that PoElp3 is involved in asexual development and pathogenicity by regulating autophagy in the rice blast fungus. 
 
Reference | Related Articles | Metrics