2025 Vol. 24 No. 4 Previous Issue   
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Special Focus: Low Carbon and High Feed Efficiency in Animals
Editorial – Low carbon and high feed efficiency in animals
Yanfen Cheng, Qiyu Diao
2025, 24(4): 1217-1219.  DOI: 10.1016/j.jia.2025.02.023
Abstract ( )   PDF in ScienceDirect  

The agricultural sector, encompassing agriculture, forestry, and land use, significantly contributes to global greenhouse gas (GHG) emissions, accounting for 23% of the total (IPCC 2019).  It faces substantial challenges due to population growth and the urgent need to reduce its GHG emissions.  Livestock husbandry, a crucial component of agriculture, accounts for a significant proportion of agricultural GHG emissions (Nugrahaeningtyas et al. 2024).  Reducing emissions from livestock is essential not only for addressing climate change but also for protecting the ecological environment and achieving sustainable development.  This is a critical task for the future of our planet and the well-being of future generations.

In recent years, China has made significant strides in reducing GHG emissions (MEE 2024), particularly in mitigating emissions from livestock (He et al. 2023).  This Special Focus of the Journal of Integrative Agriculture (JIA) explores innovative strategies proposed by Chinese researchers with practical potential for reducing livestock GHG emissions while maintaining productivity and cost efficiency.  The Focus comprises nine papers covering strategies such as optimizing livestock production systems, selecting animal genetics, and formulating balanced diets.  We hope these articles provide readers with detailed insights into China’s efforts to reduce livestock-related GHG emissions and offer valuable perspectives for policymakers, researchers, and industry professionals.


Section 1: Livestock production systems

 

This section examines the characteristics of GHG emissions from various livestock production systems, including dairy farms, grassland grazing systems, and silage-based feeding.  The studies analyze how these systems influence GHG emissions, nutrient utilization, and animal performance.

Abdul et al. (2025) assessed the contribution of cattle farms to methane emissions globally, identifying strategies such as modifying feed quantity and quality and altering gut microflora to reduce emissions.  This research introduces a novel method for estimating GHG emissions, which could also be applied to other livestock species.

Shi et al. (2025) investigated the effects of stocking rates on growth performance, energy and nitrogen utilization, and methane emissions in grazing systems.  Their results indicate that higher stocking rates may lead to lower methane emissions, underscoring the importance of optimizing grazing management based on the nutritional value of grasses.

Tian et al. (2025) analyzed the impact of different silages on gas production, including CO2, CH4, and N2O, and examined the effects of adding Lactiplantibacillus plantarum (LP) or corn meal (CM) on reducing emissions.  Their findings reveal that triticale silage produced more gas than oat silage, while LP and CM significantly reduced gas production.  The study also identified Lactococcus and Enterobacter as bacterial biomarkers for assessing gas emissions from silage.  These findings contribute to reducing GHG emissions in silage production.

The findings from these studies highlight potential strategies for mitigating GHG emissions in both extensive farming and grazing systems.

 

Section 2: Animal genetics

 

This section explores the influence of animal genetics on GHG emissions, focusing on species-specific characteristics.  The studies analyze how genetic factors affect GHG emissions and feed efficiency in different ruminants.

Zhang et al. (2025) conducted a genome-wide association study on Hu lambs and identified two single nucleotide polymorphisms positively associated with feed efficiency, providing promising molecular markers for genetic selection in sheep.  These findings offer valuable reference data and key genetic variants for breeding feed-efficient sheep.

Wang et al. (2025) examined the effects of different ratios of yak to cattle inocula on methane production and fiber digestion.  Their findings indicate that increasing the proportion of yak inoculum reduces methane production while enhancing fiber digestibility and volatile fatty acid production.  The results suggest that yaks produce less methane than cattle, providing valuable data for genetic selection among ruminants.

These findings highlight species-specific methane production characteristics.  Genome-wide association studies may serve as valuable tools for identifying potential genetic markers for future breeding programs aimed at reducing methane emissions.

 

Section 3: Diet components and feed additives

 

This section examines the impact of diet composition and feed additives on GHG emissions.  The studies analyze how these factors influence nutrient metabolism, GHG emissions, and the ruminal microbial community.

Li et al. (2025) investigated the effect of dietary fat on nitrogen metabolism efficiency in lambs.  Their findings suggest that a high-fat diet may enhance body weight gain, energy utilization, and nitrogen efficiency by promoting rumen propionate fermentation through Succinivibrio enrichment.

Biao et al. (2025) examined the impact of feeding steers sorghum grain rich in condensed tannins.  Their results show that while nitrogen utilization efficiency remained unchanged, urinary nitrous oxide emissions increased.  These findings suggest that high levels of tannin-rich sorghum grain may not be an effective feed component for reducing GHG emissions.

Ma et al. (2025) studied the effects of cordycepin on methane emissions in vitro.  Their results indicate that cordycepin significantly reduces methane production by shifting rumen fermentation from acetate to propionate formation and decreasing the relative abundance of Methanobrevibacter.

Liu et al. (2025) reviewed the effects of seaweed, particularly Asparagopsis taxiformis, on methane emissions from ruminants in vitro and in vivo.  They found that the seaweed has significant potential for mitigating enteric methane emissions, primarily due to its bromoform content.

These findings underscore the importance of diet composition and feed additives in reducing livestock GHG emissions.  Optimizing dietary components and supplementing feed additives could be a practical and effective strategy for lowering emissions in the near future.

This Special Focus contributes to the advancement of green, low-carbon, and sustainable livestock production.  By addressing livestock production systems, animal genetics, and diet optimization, these studies provide valuable knowledge and practical strategies for reducing GHG emissions while improving feed efficiency.  However, further research is needed to refine management practices in both extensive and intensive systems, identify additional genetic markers for targeted breeding, optimize feed formulations, enhance nutrient digestibility, and develop more effective, economical, and environmentally friendly feed additives.  We hope this collection will attract increasing attention from researchers and industry professionals interested in sustainable livestock production.

Section 1: Livestock production systems
Tracing the contribution of cattle farms to methane emissions through bibliometric analyses
Shakoor Abdul, Zaib Gul, Ming Xu
2025, 24(4): 1220-1233.  DOI: 10.1016/j.jia.2024.05.003
Abstract ( )   PDF in ScienceDirect  

Methane contributes to global warming, and livestock is one of the sources of methane production.  However, methane emission studies using bibliometric tools in livestock are lacking.  Given the negative impact of climate change on the ecosystem and the rise in methane emissions, it is essential to conduct a bibliometrics study to provide an overview and research trends.  We used the Bibliometrix package and VOSviewer to decipher bibliometric indices for methane emissions in cattle farms (MECF).  Current dataset were collected from the Web of Science (Core Collection) database, and 8,998 publications were analyzed.  The most co-occurring keywords scientists preferred were methane (1,528), greenhouse gas (443), methane emissions (440), and cattle (369).  Methane was the most frequently used keyword in the published scientific literature.  Thematic evolution of research themes and trend results highlighted carbon dioxide, methane, dairy cattle, cattle, and risk factors during 1999–2017.  Chinese Academy of Sciences ranked on top with 485 publications, followed by Agriculture & Agri-Food Canada, University of Colorado, National Oceanic and Atmospheric Administration, and Aarhus University.  Chinese Academy of Sciences was also the most cited organization, followed by the University of Colorado, Agriculture & Agri-Food Canada, National Oceanic and Atmospheric Administration, and United States Geological Survey.  Source analysis showed that the Science of the Total Environment was cited with the highest total link strength.  Science of the Total Environment ranked first in source core 1 with 290 citation frequencies, followed by Journal of Dairy Science with 223 citation frequencies.  Currently, no bibliometric study has been conducted on MECF, and to fill this knowledge gap, we carried out this study to highlight methane emissions in cattle farms, aiming at a climate change perspective.  In this regard, we focused on the research productivity of countries authors, journals and institutions, co-occurrence of keywords, evolution of research trends, and collaborative networking.  Based on relevance degree of centrality, methane emissions and greenhouse gases appeared as basic themes, cattle, and dairy cattle appeared as emerging/declining themes, whereas, methane, greenhouse gas and nitrous oxide appeared to fall amongst basic and motor themes.  On the other hand, beef cattle, rumen and dairy cow seem to be between motor and niche themes, and risk factors lie in niche themes.  The present bibliometric analysis provides research progress on methane emissions in cattle farms.  Current findings may provide a framework for understanding research trends and themes in MECF research. 

Effects of stocking rate on growth performance, energy and nitrogen utilization, methane emission, and grazing behavior in Tan sheep grazed on typical steppe
Hairen Shi, Pei Guo, Jieyan Zhou, Zhen Wang, Meiyue He, Liyuan Shi, Xiaojuan Huang, Penghui Guo, Zhaoxia Guo, Yuwen Zhang, Fujiang Hou
2025, 24(4): 1234-1245.  DOI: 10.1016/j.jia.2024.12.037
Abstract ( )   PDF in ScienceDirect  

Understanding livestock performance in typical steppe ecosystems is essential for optimizing grassland-livestock interactions and minimizing environmental impact.  To assess the effects of different stocking rates on the growth performance, energy and nitrogen utilization, methane (CH4) emissions, and grazing behavior of Tan sheep, a 2-year grazing experiment in the typical steppe was conducted.  The grazing area was divided into 9 paddocks, each 0.5 ha, with 3 spatial replicates for each stocking rate treatment (4, 8, and 13 sheep per paddock), corresponding to 2.7, 5.3, and 8.7 sheep ha–1.  The results showed that the neutral detergent fiber (NDF) and acid detergent fiber (ADF) contents of herbage varied between grazing years (P<0.05), with a positive correlation between stocking rate and crude fiber content in the herbage (P<0.05).  Dry matter intake (DMI) decreased with increasing stocking rate (P<0.05), and the average daily gain (ADG) was highest at 2.7 sheep ha–1 (P<0.05).  Compared to 2.7 and 8.7 sheep ha–1, the 5.3 sheep ha–1 treatment exhibited the lowest nutrient digestibility for dry matter, nitrogen, and ether extract (P<0.05).  Fecal nitrogen was lowest at 8.7 sheep ha–1 (P<0.05), while retained nitrogen as a proportion of nitrogen intake was highest.  Digestive energy (DE), metabolic energy (ME), and the ratios of DE to gross energy (GE) and ME to GE were highest at 8.7 sheep ha–1 (P<0.05).  In contrast, CH4 emissions, CH4 per DMI, and CH4E as a proportion of GE were highest at 2.7 sheep ha–1 (P<0.05).  Stocking rate and grazing year did not significantly affect rumen fermentation parameters, including volatile fatty acids, acetate, propionate, and the acetate/propionate ratio.  At 8.7 sheep ha–1, daily grazing time and inter-individual distance increased, while time allocated to grazing, walking, and ruminating/resting decreased as stocking rates increased (P<0.05).  This study highlights the importance of adjusting stocking rates based on the nutritional value of forage and grazing year to optimize grazing management. 


Gas production characteristics of oats and tritical silages and techniques for reducing gas emissions
Jing Tian, Rong Tian, Juanyan Wu, Liying Huang, Jianguo Zhang
2025, 24(4): 1246-1258.  DOI: 10.1016/j.jia.2024.09.023
Abstract ( )   PDF in ScienceDirect  

Greenhouse gas (GHG) production during ensiling not only causes the nutrient losses of silage but also promotes climate warming.  However, there is little information on the production of GHG and strategies for mitigating GHG emissions during ensiling.  This work aimed to study the gas production characteristics and techniques for reducing gas emissions during ensiling.  Oats and triticale, with Lactiplantibacillus plantarum (LP) or corn meal (CM) addition, were ensiled.  The cumulative gas volume rapidly increased and reached to the peak within the first 9 d of ensiling for both forage crops.  The highest cumulative gas volume of triticale silage was twice as much as that of oats silage.  Triticale silage produced lower carbon dioxide (CO2) concentration, higher methane (CH4) and nitrous oxide (N2O) concentrations than oats silage within the 28 d of ensiling.  Adding LP or CM significantly improved the fermentation quality and decreased the gas volume and GHG concentrations of 2 silages on d 56 (except CH4 of triticale).  At the early stage of ensiling, more Enterobacter, Lactococcus and Leuconostoc related to gas production were observed, and adding LP increased the abundance of Lactobacillus and decreased the abundance of bacteria like Kosakonia, Pantoea, Enterobacter and Lactococcus positively correlated with gas volume, CO2 and N2O concentrations.  These results suggest that gas formation during ensiling mainly occurs in the first 9 d.  Adding LP or CM can significantly improve the fermentation quality and decrease the gas volume.  This would benefit to reducing GHG emissions in silage production.


Section 2: Animal genetics
Genome-wide association study identifies novel loci associated with feed efficiency traits in Hu lambs
Deyin Zhang, Xiaolong Li, Fadi Li, Xiaoxue Zhang, Yuan Zhao, Yukun Zhang, Zongwu Ma, Huibin Tian, Xiuxiu Weng, Weimin Wang
2025, 24(4): 1259-1269.  DOI: 10.1016/j.jia.2023.10.011
Abstract ( )   PDF in ScienceDirect  
Feed efficiency (FE) is a crucial economic trait that significantly impacts profitability in intensive sheep production, and can be evaluated by the residual feed intake (RFI) and feed conversion ratio (FCR).  However, the underlying genetic mechanisms that underlie FE-related traits in sheep are not fully understood.  Herein, we measured the FE-related traits of 1,280 Hu sheep and conducted the phenotype statistics and correlation analysis, the result showcase that there was a large variation for FE-related traits, and RFI was significant positive correlation with average daily feed intake (ADFI) and FCR.  Moreover, a genome-wide association study (GWAS) was conducted using whole-genome resequencing data to investigate the genetic associations of ADFI, FCR and RFI.  For ADFI and FCR traits, 2 and one single nucleotide polymorphisms (SNPs) exceeded the genome-wide significance threshold, whereas ten and 5 SNPs exceeded the suggestive significance threshold.  For RFI traits, only 4 SNPs exceeded the suggestive significance threshold.  Finally, a total of 8 genes (LOC101121953, LOC101110202, CTNNA3, IZUMO3, PPM1E, YIPF7, ZSCAN12 and LOC105603808) were identified as potential candidate genes for FE-related traits.  Simultaneously, we further analyzed the effects of 2 candidate SNPs associated with RFI on growth and FE traits in enlarged experimental population, the results demonstrated that these 2 SNPs was not significantly associated with growth traits (P>0.05), but significantly related to RFI traits (P<0.05).  These findings will provide valuable reference data and key genetic variants that can be used to effectively select feed-efficient individual in sheep breeding programs.


Effects of ratios of yak to cattle inocula on methane production and fiber digestion in rumen in vitro cultures
Weiwei Wang, Wei Guo, Jianxin Jiao, Emilio M Ungerfeld, Xiaoping Jing, Xiaodan Huang, Allan A Degen, Yu Li, Sisi Bi, Ruijun Long
2025, 24(4): 1270-1284.  DOI: 10.1016/j.jia.2024.01.026
Abstract ( )   PDF in ScienceDirect  
Yaks are well-adapted to the harsh environment of the Tibetan Plateau, and they emit less enteric methane (CH4) and digest poor-quality forage better than cattle.  To examine the potential of yak rumen inoculum to mitigate CH4 production and improve digestibility in cattle, we incubated substrate with rumen inoculum from yak (YRI) and cattle (CRI) in vitro in five ratios (YRI:CRI): (1) 0:100 (control), (2) 25:75, (3) 50:50, (4) 75:25 and (5) 100:0 for 72 h.  The YRI: CRI ratios of 50:50, 75:25 and 100:0 produced less total gas and CH4 and accumulated less hydrogen (H2) than 0:100 (control) at most time points.  From 12 h onwards, there was a linear decrease (P<0.05) in carbon dioxide (CO2) production with increasing YRI:CRI ratio.  At 72 h, the ratios of 50:50 and 75:25 had higher dry matter (+7.71% and +4.11%, respectively), as well as higher acid detergent fiber digestibility (+15.5% and +7.61%, respectively), when compared to the 0:100 ratio (P<0.05).  Increasing the proportion of YRI generally increased total VFA concentrations, and, concomitantly, decreased the proportion of metabolic hydrogen ([2H]) incorporated into CH4, and decreased the recovery of [2H].  The lower [2H] recovery indicates unknown [2H] sinks in the culture.  Estimated Gibbs free energy changes (ΔG) for reductive acetogenesis were negative, indicating the thermodynamic feasibility of this process.  It would be beneficial to identify: 1) the alternative [2H] sinks, which could help mitigate CH4 emission, and 2) core microbes involved in fiber digestion.  This experiment supported lower CH4 emission and greater nutrient digestibility of yaks compared to cattle.  Multi-omics combined with microbial culture technologies developed in recent years could help to better understand fermentation differences among species.


Section 3: Diet components and feed additives
Dietary fat supplement affected energy and nitrogen metabolism efficiency and shifted rumen fermentation toward glucogenic propionate production via enrichment of Succiniclasticum in male twin lambs
Wenjuan Li, Tao Ma, Naifeng Zhang, Kaidong Deng, Qiyu Diao
2025, 24(4): 1285-1295.  DOI: 10.1016/j.jia.2023.06.037
Abstract ( )   PDF in ScienceDirect  


The aim of this study was to investigate the effects of dietary fat on energy and nitrogen (N) metabolism efficiency, rumen fermentation, and microbiota in twin suckling lambs.  Thirty pairs of twin male lambs were randomly divided into two groups with one group receiving a high-fat diet (HF) and the other a normal-fat diet (NF).  Two diets (milk replacer and starter) of equal protein and different fat levels.  The metabolism test was conducted when the lambs were 50–60 days old, and nine pairs of twin lambs were randomly selected for slaughter to collect rumen fluid at 60 days old.  The result showed that fat addition increased the final body weight (BW), ruminal ammonia nitrogen (NH3-N) content, proportion of propionic acid, and estimated methane production (CH4e) (P<0.05).  The high fat diet tended to improve digestive energy (DE), metabolism energy (ME), DE/ME, utilisation of N (0.05<P<0.1).  However, microbial crude protein (MCP) content, total volatile fatty acids (VFA), acetic acid ratio, and the ratio of acetate to propionate (A:P) were lower than that in the NF group (P<0.05).  Regardless of whether fat is added or not, no different were observed in blood metabolites between the treatment.  High-throughput sequencing revealed that fat addition before weaning increased phyla Proteobacteria and genera of Succinivibrio, but decreased the relative abundance of Clostridium IV, Dialister, Roseburia, Acidaminococcus, and Megasphaera genera.  These findings indicated that high fat diet improved body weight, energy and nitrogen utilization may by shifting the rumen toward propionate fermentation via the enrichment of Succinivibrio.


Inclusion of sorghum grain rich in condensed tannins in the diet of steers did not affect the nitrogen utilization efficiency but increased the urine nitrous oxide emissions
Biao Xie, Changfa Mao, Xu Shen, Yufeng Liu, Qingyue Liang, Guangyong Zhao
2025, 24(4): 1296-1309.  DOI: 10.1016/j.jia.2023.11.035
Abstract ( )   PDF in ScienceDirect  
The objectives of this study which included two experiments were to investigate the effects of dietary inclusion of sorghum grain rich in condensed tannins (CT) (18.9 g kg–1 dry matter (DM)) on nitrogen (N) metabolism and urine nitrous oxide (N2O) emissions of beef steers.  In experiment 1, six Limousin×Luxi crossbreed steers with an initial liveweight of (245.0±18.7) kg were used as experimental animals.  Three levels of sorghum grain, i.e., 0, 167 and 338 g kg–1 DM were included in diets as experimental treatments.  The animals and the treatments were randomly assigned to a replicated 3×3 Latin square design.  In experiment 2, static incubation technique was used to determine the N2O emissions of the urine samples collected in experiment 1.  The results of experiment 1 showed that dietary inclusion of sorghum grain linearly increased the faecal N excretion (P=0.001), the total N excretion (P=0.010) and the faecal N to N intake ratio (P=0.021), but it did not affect the N retention and the N utilization efficiency (P>0.10).  The plasma metabolomic data showed that dietary inclusion of sorghum grain increased the relative concentrations of phenolic acid (N1, N5, N10-tris-trans-p-coumaroylspermine and prenyl cis-caffeate) and carnitine (3-hydroxyisovalerylcarnitine and linoelaidyl carnitine).  The results also showed that dietary inclusion of sorghum grain linearly increased the urinary urea excretion (P=0.010) and decreased the urinary excretion of purine derivatives (P=0.041) as well as the estimated rumen microbial N supply (P=0.012) based on urinary purine derivatives.  The results of experiment 2 showed that including sorghum grain in the diet linearly increased the average concentrations of NH4+-N (P=0.012), NO2-N (P=0.009), NO3-N (P=0.001) and the total inorganic N (P<0.001) in the soil enriched with urine samples.  The urine sample N2O-N flux (P=0.001), the estimated steer urine N2O-N flux (P=0.021) and the N2O-N to urinary N ratio (P=0.038) linearly increased with increasing inclusion of sorghum grain in the diet.  In conclusion, dietary inclusion of sorghum grain containing high CT at 167 and 338 g kg–1 DM did not affect the N utilization efficiency of steers but increased the urine N2O-N emissions by 5.7 and 31.4%, respectively.  For reducing the N2O emissions to the environment, high levels of sorghum grain should not be included in the diet of steers.


16S amplicon sequencing and untargeted metabolomics reveal changes in rumen microorganisms and metabolic pathways involved in the reduction of methane by cordycepin
Haokai Ma, Dengke Liu, Rui Liu, Yang Li, Modinat Tolani Lambo, Baisheng Dai, Weizheng Shen, Yongli Qu, Yonggen Zhang
2025, 24(4): 1310-1326.  DOI: 10.1016/j.jia.2024.04.014
Abstract ( )   PDF in ScienceDirect  
As a major contributor to methane production in agriculture, there is a need for a suitable methane inhibitor to reduce ruminant methane emissions and minimize the impact on the climate.  This work aimed to explore the influence of cordycepin on rumen fermentation, gas production, microbiome and their metabolites.  A total of 0.00, 0.08, 0.16, 0.32, and 0.64 g L–1 cordycepin were added into fermentation bottles containing 2 g total mixed ration for in vitro ruminal fermentation, and then the gas produced and fermentation parameters were measured for each bottle.  Samples from the 0 and 0.64 g L–1 cordycepin addition were selected for 16S rRNA gene sequencing and metabolome analysis.  The result of this experiment indicated that the addition of cordycepin could linearly increase the concentration of total volatile fatty acid, ammonia nitrogen, the proportion of propionate, valerate, and isovalerate, and linearly reduce ruminal pH and methane, carbon dioxide, hydrogen and total gas production, as well as the methane proportion, carbon dioxide proportion and proportion of butyrate.  In addition, there was a quadratic relationship between hydrogen and cordycepin addition.  At the same time, the relative abundance of Succiniclasticum, Prevotella, Rikenellaceae_RC9_gut_group, NK4A214_group, Christensenellaceae_R_7_group, unclassified_F082, Veillonellaceae_UCG_001, Dasytricha, Ophryoscolex, Isotricha, unclassified_Eukaryota, Methanobrevibacter, and Piromyces decreased significantly after adding the maximum dose of cordycepin.  In contrast, the relative abundance of Succinivibrio, unclassified_Succinivibrionaceae, Prevotellaceae_UCG_001, unclassified_Lachnospiraceae, Lachnospira, Succinivibrionaceae_UCG_002, Pseudobutyrivibrio, Entodinium, Polyplastron, unclassified_Methanomethylophilaceae, Methanosphaera, and Candidatus_Methanomethylophilus increased significantly.  Metabolic pathways such as biosynthesis of unsaturated fatty acids and purine metabolism and metabolites such as arachidonic acid, adenine, and 2´-deoxyguanosine were also affected by the addition of cordycepin.  Based on this, we conclude that cordycepin is an effective methane emission inhibitor that can change the rumen metabolites and fermentation parameters by influencing the rumen microbiome, thus regulating rumen methane production.  This experiment may provide a potential theoretical reference for developing Cordyceps byproduct or additives containing cordycepin as methane inhibitors.


Seaweed as a feed additive to mitigate enteric methane emissions in ruminants: Opportunities and challenges
Yunlong Liu, Mi Zhou, Qiyu Diao, Tao Ma, Yan Tu
2025, 24(4): 1327-1341.  DOI: 10.1016/j.jia.2024.09.036
Abstract ( )   PDF in ScienceDirect  
Cutting farming-related methane emissions from ruminants is critical in the battle against climate change.  Since scientists initially investigated the potential of marine macroalgae to reduce methane emissions, using seaweeds as an anti-methanogenic feed additive has become prevailing in recent years.  Asparagopsis taxiformis is the preferred species because it contains a relatively higher concentration of bromoform.  As a type of halogenated methane analogue, bromoform contained in Ataxiformis can specifically inhibit the activity of coenzyme M methyltransferase, thereby blocking the ruminal methanogenesis.  However, bromoform is a potential toxin and ozone-depleting substance.  In response, current research focuses on the effects of bromoform-enriched seaweed supplementation on ruminant productivity and safety, as well as the impact of large-scale cultivation of seaweeds on the atmospheric environment.  The current research on seaweed still needs to be improved, especially in developing more species with low bromoform content, such as Bonnemaisonia hamifera, Dictyota bartayresii, and Cystoseira trinodis.  Otherwise, seaweed is rich in bioactive substances and exhibits antibacterial, anti-inflammatory, and other physiological properties, but research on the role of these bioactive compounds in methane emissions is lacking.  It is worthy of deeper investigation to identify more potential bioactive compounds.  As a new focus of attention, seaweed has attracted the interest of many scientists.  Nevertheless, seaweed still faces some challenges as a feed additive to ruminants, such as the residues of heavy metals (iodine and bromine) and bromoform in milk or meat, as well as the establishment of a supply chain for seaweed cultivation, preservation, and processing.  We have concluded that the methane-reducing efficacy of seaweed is indisputable.  However, its application as a commercial feed additive is still influenced by factors such as safety, costs, policy incentives, and regulations.


Review
Oral secretions: A key molecular interface of plant–insect herbivore interactions
Bin Li, Wangpeng Shi, Shaoqun Zhou, Guirong Wang
2025, 24(4): 1342-1358.  DOI: 10.1016/j.jia.2024.05.018
Abstract ( )   PDF in ScienceDirect  
The oral secretions of insect herbivores are complex mixtures of organic and inorganic solutes and enzymes that are deposited onto plant tissues during the feeding process.  Some specific components of insect oral secretions have been shown to confer important functions in mediating plant–insect interactions at the molecular level.  In this review, we examined the biochemical studies of insect oral secretions to summarize the current knowledge of their compositions.  We then moved beyond the functional studies of components of oral secretions, and focused on the literature that pinpointed specific molecular targets of these compounds.  Finally, we highlighted the investigations of oral secretion components in the context of insect physiology, which shed light on the potential evolutionary trajectory of these multi-functional molecules.


Crop Science
A barley SS2a single base mutation at the splicing site leads to obvious changes in starch
Bang Wang, Jing Liu, Xiaolei Chen, Qiang Xu, Yazhou Zhang, Huixue Dong, Huaping Tang, Pengfei Qi, Mei Deng, Jian Ma, Jirui Wang, Guoyue Chen, Yuming Wei, Youliang Zheng, Qiantao Jiang
2025, 24(4): 1359-1371.  DOI: 10.1016/j.jia.2023.10.031
Abstract ( )   PDF in ScienceDirect  
Starch biosynthesis is a complex process that relies on the coordinated action of multiple enzymes.  Resistant starch is not digested in the small intestine, thus preventing a rapid rise in the glycemic index.  Starch synthase 2a (SS2a) is a key enzyme in amylopectin biosynthesis that has significant effects on starch structure and properties.  In this study, we identified an ss2a null mutant (M3-1413) with a single base mutation from an ethyl methane sulfonate (EMS)-mutagenized population of barley.  The mutation was located at the 3´ end of the first intron of the RNA splicing receptor (AG) site, and resulted in abnormal RNA splicing and two abnormal transcripts of ss2a, which caused the inactivation of the SS2a gene.  The starch structure and properties were significantly altered in the mutant, with M3-1413 containing lower total starch and higher amylose and resistant starch levels.  This study sheds light on the effect of barley ss2a null mutations on starch properties and will help to guide new applications of barley starch in the development of nutritious food products.


Fine mapping and discovery of MIR172e, a candidate gene required for inflorescence development and lower floret abortion in maize ear
Lanjie Zheng, Qianlong Zhang, Huiying Liu, Xiaoqing Wang, Xiangge Zhang, Zhiwei Hu, Shi Li, Li Ji, Manchun Ji, Yong Gu, Jiaheng Yang, Yong Shi, Yubi Huang, Xu Zheng
2025, 24(4): 1372-1389.  DOI: 10.1016/j.jia.2023.10.030
Abstract ( )   PDF in ScienceDirect  
Maize (Zea mays L.) is a monoecious grass species with separate male and female inflorescences which form the tassel and ear, respectively.  The mature ear inflorescences usually bear hundreds of grains, so they directly influence maize grain production and yield.  Here, we isolated a recessive maize mutant, tasselseed2016 (ts2016), which exhibits pleiotropic inflorescence defects and reduced grain yield.  These defects include the loss of determinacy and identity in meristems and floral organs, as well as a lack of the lower floret abortion in maize ear, and a smaller grain size.  Using map-based cloning and allelic testing, we identified and confirmed the microRNA gene MIR172e as the target gene controlling these related traits.  Furthermore, our evidence uncovered a new potential miR172e/ETHYLENE RESPONSIVE ELEMENT BINDING197 (EREB197) regulatory module which controls lower floret abortion in maize ear.  Transcriptome analysis revealed that the mutation of MIR172e represses multiple biological processes, particularly the flower development and hormone-related pathways in maize ear.  We also found that a mutation in the DNA sequence of MIR172e affects RNA transcription, resulting in elongation blockage at the mutant site.  Our results reveal the function and molecular mechanism of MIR172e in maize inflorescences and grain yield, and this study deepens our knowledge of maize inflorescence development.



The ABA-inducible gene IbTSJT1 positively regulates drought tolerance in transgenic sweetpotato
Yuxin Wang, Huan Zhang, Shaopei Gao, Hong Zhai, Shaozhen He, Ning Zhao, Qingchang Liu
2025, 24(4): 1390-1402.  DOI: 10.1016/j.jia.2023.10.015
Abstract ( )   PDF in ScienceDirect  

The TSJT1 protein belongs to the class-II glutamine amidotransferase (GATase) superfamily.  Research on the functions and underlying mechanisms of TSJT1 in plants is limited.  In this study, the abscisic acid (ABA)-inducible gene IbTSJT1 was isolated from drought-tolerant sweetpotato line Xushu 55-2.  Its expression was strongly induced by PEG6000 and ABA.  The IbTSJT1 protein was localized in the nucleus and cell membrane.  IbTSJT1-overexpressing sweetpotato plants exhibited significantly enhanced drought tolerance.  Their ABA and proline contents and superoxide dismutase (SOD) and peroxidase (POD) activities were increased, and their reactive oxygen species (ROS) scavenging-related genes were upregulated under drought stress.  The stomatal aperture assay confirmed that the IbTSJT1-overexpressing plants had greater sensitivity to ABA.  The results of yeast one-hybrid (Y1H) assay, electrophoretic mobility shift assay (EMSA), luciferase reporter assay and ChIP-qPCR assay indicated that IbABF2 can directly bind to the cis-acting ABA-responsive element (ABRE) in the IbTSJT1 promoter to activate the expression of IbTSJT1.  These findings suggest that IbTSJT1 mediates ABA-dependent drought stress responses and enhances drought tolerance by inducing stomatal closure and activating the ROS scavenging system in transgenic sweetpotato.  Our study provides a novel gene for improving drought tolerance in sweetpotato and other plants. 

Research on the estimation of wheat AGB at the entire growth stage based on improved convolutional features
Tao Liu, Jianliang Wang, Jiayi Wang, Yuanyuan Zhao, Hui Wang, Weijun Zhang, Zhaosheng Yao, Shengping Liu, Xiaochun Zhong, Chengming Sun
2025, 24(4): 1403-1423.  DOI: 10.1016/j.jia.2024.07.015
Abstract ( )   PDF in ScienceDirect  

The wheat above-ground biomass (AGB) is an important index that shows the life activity of vegetation, which is of great significance for wheat growth monitoring and yield prediction.  Traditional biomass estimation methods specifically include sample surveys and harvesting statistics.  Although these methods have high estimation accuracy, they are time-consuming, destructive, and difficult to implement to monitor the biomass at a large scale.  The main objective of this study is to optimize the traditional remote sensing methods to estimate the wheat AGB based on improved convolutional features (CFs).  Low-cost unmanned aerial vehicles (UAV) were used as the main data acquisition equipment.  This study acquired RGB and multi-spectral (MS) image data of the wheat population canopy for two wheat varieties and five key growth stages.  Then, field measurements were conducted to obtain the actual wheat biomass data for validation.  Based on the remote sensing indices (RSIs), structural features (SFs), and convolutional features (CFs), this study proposed a new feature named AUR-50 (Multi-source combination based on convolutional feature optimization) to estimate the wheat AGB.  The results show that AUR-50 could more accurately estimate the wheat AGB than RSIs and SFs, and the average R2 exceeded 0.77.  AUR-50MS had the highest estimation accuracy (R2 of 0.88) in the overwintering period.  In addition, AUR-50 reduced the effect of the vegetation index saturation on the biomass estimation accuracy by adding CFs, where the highest R2 was 0.69 at the flowering stage.  The results of this study provide an effective method to evaluate the AGB in wheat with high throughput and a research reference for the phenotypic parameters of other crops.

Matching the light and nitrogen distributions in the maize canopy to achieve high yield and high radiation use efficiency
Xiaoxia Guo, Wanmao Liu, Yunshan Yang, Guangzhou Liu, Bo Ming, Ruizhi Xie, Keru Wang, Shaokun Li, Peng Hou
2025, 24(4): 1424-1435.  DOI: 10.1016/j.jia.2023.12.025
Abstract ( )   PDF in ScienceDirect  
The distributions of light and nitrogen within a plant’s canopy reflect the growth adaptation of crops to the environment and are conducive to improving the carbon assimilation ability.  So can the yield in crop production be maximized by improving the light and nitrogen distributions without adding any additional inputs?  In this study, the effects of different nitrogen application rates and planting densities on the canopy light and nitrogen distributions of two high-yielding maize cultivars (XY335 and DH618) and the regulatory effects of canopy physiological characteristics on radiation use efficiency (RUE) and yield were studied based on high-yield field experiments in Qitai, Xinjiang Uygur Autonomous Region, China, during 2019 and 2020.  The results showed that the distribution of photosynthetically active photon flux density (PPFD) in the maize canopy decreased from top to bottom, while the vertical distribution of specific leaf nitrogen (SLN) initially increased and then decreased from top to bottom in the canopy.  When SLN began to decrease, the PPDF values of XY335 and DH618 were 0.5 and 0.3, respectively, corresponding to 40.6 and 49.3% of the total leaf area index (LAI).  Nitrogen extinction coefficient (KN)/light extinction coefficient (KL) ratio in the middle and lower canopy of XY335 (0.32) was 0.08 higher than that of DH618 (0.24).  The yield and RUE of XY335 (17.2 t ha–1 and 1.8 g MJ–1) were 7.0% (1.1 t ha–1) and 13.7% (0.2 g MJ–1) higher than those of DH618 (16.1 t ha–1 and 1.6 g MJ–1).  Therefore, better light conditions (where the proportion of LAI in the upper and middle canopy was small) improved the light distribution when SLN started to decline, thus helping to mobilize the nitrogen distribution and maintain a high KN and KN/KL ratio.  In addition, KN/KL was a key parameter for yield improvement when the maize nutrient requirements were met at 360 kg N ha–1.  At this level, an appropriately optimized high planting density could promote nitrogen utilization and produce higher yields and greater efficiency.  The results of this study will be important for achieving high maize yields and the high efficiency cultivation and breeding of maize in the future.


Crossing latitude introduction delayed flowering and facilitated dry matter accumulation of soybean as a forage crop
Dong An, Xingfa Lai, Tianfu Han, Jean Marie Vianney Nsigayehe, Guixin Li, Yuying Shen
2025, 24(4): 1430-1447.  DOI: 10.1016/j.jia.2024.03.033
Abstract ( )   PDF in ScienceDirect  
Grain soybean (Glycine max (L.) Merr.) shows potential as a forage crop following its introduction from low to high latitudes due to in its growth phenotype.  However, the application of this approach is impeded by the diverse ecological types of soybean, their adaptability to the introduction, and the uncertainty surrounding the growth phenotype post-introduction.  This study introduced 24 grain soybean varieties from low-latitude regions (22–31°N) to the high-latitude northwestern Loess Plateau (39°N) between 2018 and 2019.  The growth phenotypes were observed, and their forage productivity potential was assessed.  All varieties displayed delayed flowering following cross-latitude introduction, with the vegetative growth phase of some varieties even exceeding their entire growth duration at their origin.  Rapid dry matter accumulation rates indicated growth adaptation performance and formed the basis for soybean forage yield.  Varieties from the tropical South China region exhibited significant yield advantages, with dry matter yields of 8.97–14.68 t ha–1 and crude protein yields of 1.44–2.51 t ha–1.  Varieties HX3 and GX7 from this region demonstrated optimal growth adaptability and productivity in the cross-latitude environment, achieving the highest dry matter yields of 14.68 and 13.86 t ha–1, respectively.  As a result, HX3 and GX7 are recommended for local farming systems to provide high-quality forage.  The cross-latitude introduction of soybean is proposed as a viable and efficient strategy for forage improvement and application.


Horticulture
Genetic diversity of the self-incompatibility locus in diploid potato
Xinyu Jing, Duoduo Qian, Xiuhan Jiang, Pei Wang, Huihui Bao, Dianjue Li, Yanhui Zhu, Guangtao Zhu, Chunzhi Zhang
2025, 24(4): 1448-1460.  DOI: 10.1016/j.jia.2024.12.011
Abstract ( )   PDF in ScienceDirect  
Re-domestication of diploid potato (Solanum tuberosum) into a seed crop is an innovative breeding method to accelerate genetic improvement.  Seed propagation would allow hybrid production and mix superior alleles.  However, almost all diploid potatoes in nature are self-incompatible (SI).  Gametophytic self-incompatible (GSI) is a widespread SI in Solanaceae and is controlled by the S locus that contains a ribonuclease (S-RNase) and multiple F-box (SLFs); however, the genetic diversity of the S locus in potato is unclear.  This study identified 21 S-RNase alleles involved in SI from 194 diploid potato accessions by large-scale transcriptome sequencing.  The levels of amino acid similarity among different S-RNase proteins varied from 31.3 to 95.8%.  S2 allele is the most widespread in 194 diploid potatoes and is mainly distributed in the Stuberosum Group Phureja.  Based on genomic annotation and expression analysis, we identified 12 potential functional SI male-determinant genes, S-locus F-box (SLFs), encoding F-box proteins in the S2 locus on a genomic region of approximately 13 Mb.  Comparative genomics analysis showed that eight SLF genes are relatively conserved among four homozygous S locus.  The Ka and Ks analysis suggested that S-RNase and intra-haplotypic SLF genes have co-evolved.  These findings help select suitable pollinators, combine more hybrid combinations, and fully use heterosis to accelerate diploid potato breeding.


The high quality genome of potherb mustard Xuecai (Brassica juncea var. multiceps) provides new insights into leaf shape variation
Shuangping Heng, Mengdi Cui, Xiaolin Li, Shaoheng Zhang, Guangzhi Mao, Feng Xing, Zhengjie Wan, Jing Wen, Jinxiong Shen, Tingdong Fu
2025, 24(4): 1461-1476.  DOI: 10.1016/j.jia.2024.04.031
Abstract ( )   PDF in ScienceDirect  
The potherb mustard Xuecai (XC) cultivar is a cruciferous vegetable that is popular either fresh or pickled.  Due to the deep notches in the edges of leaves in mustard XC, this plant can be said to have multipinnately lobed leaves.  The net photosynthesis of lobed leaves is significantly greater than that of simple leaves.  However, the molecular mechanism of leaf shape variation has not been determined.  Here, we used HiFi and Hi-C data to assemble the XC genome.  The genome was 961.72 Mb in size, with a contig N50 value of 6.565 Mb.  The XC genome was compared with four previously sequenced mustard genomes, and the genomic collinearity regions, SNPs, and indels were identified.  Five BjRCO genes were found on chromosome (Chr.) A10 in potherb mustard XC when the BjRCO gene locus was compared against other sequenced Bjuncea genomes.  Segmental duplication was found to contribute to the BjRCO gene copy number.  The transcript expression of BjRCO genes was greater in multipinnately lobed leaves than in sawtooth-like leaves.  Together, these findings indicate that both the greater copy number and the expression level of BjRCO genes regulate leaf shape from simple to complex in Bjuncea.  Gene editing of the BjRCO gene from XC changed the leaf shape from multipinnately lobed to simple.  The high-quality XC genome sequence not only provides new insight into Bjuncea leaf-type genomics but also helps in deciphering leaf shape variation.  Our study provides insights into the variation and evolution of important traits in Brassica plants through a comparative analysis of the sequenced genomes.


Molecular mechanism of delayed development by interfering RNA targeting the phenylalanine ammonia lyase gene (pal1) in Pleurotus ostreatus
Qi He, Yuqing Jiang, Chenyang Huang, Lijiao Zhang, Ludan Hou, Fangjie Yao, Mengran Zhao
2025, 24(4): 1477-1488.  DOI: 10.1016/j.jia.2024.06.002
Abstract ( )   PDF in ScienceDirect  
Blocking the development of edible mushrooms will affect the production cycle and yield of fruiting bodies.  Phenylalanine ammonia lyase (PAL, EC 4.3.1.24.) is an enzyme that catalyzes the deamination of phenylalanine to form trans-cinnamic acid.  Previous studies have shown that a decrease in pal1 gene transcription delays fruiting body development in Pleurotus ostreatus.  Herein, we used wild type (WT) and RNA interference (RNAi) strains to study the molecular regulation of pal1 by RNA sequencing and Agrobacterium-mediated genetic transformation.  Our results showed that interference with the pal1 gene resulted in reductions in the total PAL enzyme activity and the total phenol content, as well as an increase in the intracellular H2O2 content.  RNA-Seq data demonstrated that the significantly enriched KEGG terms were mainly related to the peroxisome pathway, MAPK signaling pathway-yeast and three other pathways, and the catalase (CAT) gene cat1 is also involved in multiple pathways that were enriched above.  Exogenous H2O2 significantly enhanced the transcription of the cat1 gene and elevated total CAT enzymatic activity.  Moreover, the levels of cat1 gene transcription and the total CAT enzymatic activity in the RNAi-pal1 strains gradually become closer to those in the WT strain through the removal of H2O2, which indicated that pal1 regulated the expression of cat1 by affecting the intracellular H2O2 content.  Finally, the overexpression of the cat1 gene in P. ostreatus caused growth retardation, especially during the process of primordia formation.  In conclusion, this study demonstrated that PAL1 affects cat1 gene expression through the signaling molecule H2O2 and regulates the development of P. ostreatus.  The findings of this study enhance our understanding of the molecular developmental mechanism of edible mushrooms.


Overexpression of the apple m6A demethylase gene MdALKBH1A regulates resistance to heat stress and fixed-carbon starvation
Ru Bao, Tianli Guo, Zehua Yang, Chengyu Feng, Junyao Wu, Xiaomin Fu, Liu Hu, Changhai Liu, Fengwang Ma
2025, 24(4): 1489-1502.  DOI: 10.1016/j.jia.2025.01.001
Abstract ( )   PDF in ScienceDirect  
The pivotal role of N6-methyladenosine (m6A) demethylases in regulating plant stress responses has been widely explored; however, the function of apple m6A demethylases under heat stress and fixed-carbon starvation is unclear.  In this study, the apple RNA demethylase gene family was identified, and the demethylase gene MdALKBH1A was selected for further analysis.  Using liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis, we demonstrated that MdALKBH1A is the m6A demethylase of apple.  Moreover, transgenic ‘Micro Tom’ tomato plants overexpressing MdALKBH1A were more sensitive to high temperature, probably due to the decreased antioxidant ability, increased membrane lipid peroxidation and reduced plasma membrane stability.  However, these tomato plants overexpressing MdALKBH1A were more resistant to fixed-carbon starvation, as evidenced by the improved plasma membrane stability, enhanced photosynthetic rates and elevated autophagic activity.  In summary, our results highlight the crucial role played by MdALKBH1A in the response of apple plants to high-temperature stress and fixed-carbon starvation.


Multi-nutrient fertilization-based analysis of fruit quality and mineral element composition during fruit development in Merlot wine grapevines
Xiaolong Wang, Xuedong Shao, Zhengwen Zhang, Xiaomin Zhong, Xiaohao Ji, Xiangbin Shi, Chang Liu, Zhiqiang Wang, Fengzhi Liu, Haibo Wang
2025, 24(4): 1503-1514.  DOI: 10.1016/j.jia.2024.04.032
Abstract ( )   PDF in ScienceDirect  
Mineral elements play a crucial role in plant growth and development.  Ensuring the proper supply of these elements in the soil to maintain the optimum range within plants is necessary for achieving optimal fruit yield and quality.  Unfortunately, the application of NPKCaMg fertilizers to fruit trees is often either insufficient or excessive, leading to environmental degradation and reduced fruit yield and quality.  To assess the impacts of different fertilizers on the biological traits of grapes and their responses to nutritional elements, Merlot grapevines were subjected to multi-nutrient fertilization over four consecutive growing seasons from 2018 to 2021 in Penglai District, Yantai, China.  Principal component analysis revealed that the T11 treatment, consisting of N3P3K1Ca2Mg4, was the most suitable fertilizer type and application design among the treatments.  The application of T11 resulted in a significantly lower (24.29–35.20%) fertilizer usage, and it resulted in increases in several important traits such as 100-grain weight (HGW), number of seeds (SN), total soluble solids (TSS), total seed phenols (SP), seed flavanols (SFI), and seed tannins (ST) by 3.28–12.84%, 3.76–20.03%, 1.11–14.95%, 2.16–23.69%, 11.00–32.78%, and 1.07–23.35%, respectively, compared to the T14 (N4P2K3Ca1Mg4), T16 (N4P4K1Ca3Mg2), T13 (N4P1K4Ca2Mg3), and T15 (N4P3K2Ca4Mg1) treatments.  Flowering and fruiting processes exhibited a considerable demand for NPK, with higher requirements for K and B during fruit growth and development compared to the other macroelements and micronutrients, respectively.  Excessive K in soil enhanced the competitive inhibition of Ca uptake by Merlot grapevines.  The optimal ranges of mineral element contents for total peel phenols (PP), peel flavanols (PFI), total peel flavonoids (PFD), total seed phenols (SP), and seed tannins (ST) were primarily influenced by grape variety and nutritional analysis method.  In conclusion, the careful selection of NPKCaMg fertilizer and its precise application to soil at an optimum range of mineral elements is critical for grapevine growth and development.


Plant Protection
Proteomic analysis revealed the function of PoElp3 in development, pathogenicity, and autophagy through the tRNA-mediated translation efficiency in the rice blast fungus
Yuanhao Liu, Ting Sun, Yuyong Li, Jianqiang Huang, Xianjun Wang, Huimin Bai, Jiayi Hu, Zifan Zhang, Shuai Wang, Dongmei Zhang, Xiuxiu Li, Zonghua Wang, Huakun Zheng, Guifang Lin
2025, 24(4): 1515-1528.  DOI: 10.1016/j.jia.2024.01.027
Abstract ( )   PDF in ScienceDirect  
The Elongator complex is conserved in a wide range of species and plays crucial roles in diverse cellular processes.  We have previously shown that the Elongator protein PoElp3 was involved in the asexual development, pathogenicity, and autophagy of the rice blast fungus.  In this study, we further revealed that PoElp3 functions via tRNA-mediated protein integrity.  Phenotypic analyses revealed that overexpression of two of the tRNAs, tK(UUU) and tQ(UUG) could rescue the defects in ΔPoelp3 strain.  TMT-based proteomic and transcriptional analyses demonstrated that 386 proteins were down-regulated in ΔPoelp3 strain compared with wild type strain Guy11, in a transcription-independent manner.  Codon usage assays revealed an enrichment of Glutamine CAA-biased mRNA in the 386 proteins compared with the 70-15 genome.  In addition to those reported previously, we also found that PoErp9, a sphingolipid C9-methyltransferase, was down-regulated in the ΔPoelp3 strain.  Through an ILV2-specific integration of PoERP9-GFP into the wild type and ΔPoelp3 strain, we were able to show that PoErp9 was positively regulated by PoElp3 translationally but not transcriptionally.  Functional analyses revealed that PoErp9 was involved in the fungal growth, conidial development, pathogenicity, and TOR-related autophagy homeostasis in Pyricularia oryzae.  Taken together, our results suggested that PoElp3 acts through the tRNA-mediated translational efficiency to regulate asexual development, pathogenicity, sphingolipid metabolism, and autophagy in the rice blast fungus.


Identification of a TOR signaling pathway gene as a candidate target for reproductive management of Adelphocoris suturalis
Wanying Zheng, Panyang Jiao, Xiaona Xu, Weihua Ma, J. Joe Hull, Hongxia Hua, Lizhen Chen
2025, 24(4): 1529-1541.  DOI: 10.1016/j.jia.2024.08.005
Abstract ( )   PDF in ScienceDirect  

Adelphocoris suturalis is a polyphagous pest that is increasingly causing severe economic damage due to more frequent outbreaks.  The development of non-target resistance to commercial Bacillus thuringiensis (Bt) cotton has further exacerbated its pest status and amplified the need for more sustainable methods of control.  RNA interference (RNAi)-based pest management strategies, such as root soaking and transgenic plants that express dsRNAs, have proven to be reliable, eco-friendly pest control strategies.  To identify new RNAi targets for potential Asuturalis population control, we investigated the target of rapamycin (TOR) signaling pathway.  A critical role for this pathway in Asuturalis reproductive regulation was suggested by pharmacological analyses.  Subsequent RNAi-mediated knockdown of the Asuturalis TOR pathway genes TOR, Ras homolog enriched in the brain (Rheb), and ribosomal S6 kinase (S6K) reduced fertility.  Moreover, a spray-induced and nanocarrier-delivered gene silencing (SI-NDGS) system targeting TOR successfully suppressed ovarian development, which demonstrates its effectiveness as a pest control target.  These results provide a critical foundation for understanding reproductive regulation in Asuturalis and introduce new candidates for RNAi-based Asuturalis management.


Agro-ecosystem & Environment
Crop straw incorporation increases the soil carbon stock by improving the soil aggregate structure without stimulating soil heterotrophic respiration
Hongyu Lin, Jing Zheng, Minghua Zhou, Peng Xu, Ting Lan, Fuhong Kuang, Ziyang Li, Zhisheng Yao, Bo Zhu
2025, 24(4): 1542-1561.  DOI: 10.1016/j.jia.2024.09.026
Abstract ( )   PDF in ScienceDirect  
Crop straw incorporation is widely recommended to maintain crop yields and improve soil organic carbon (SOC) stocks as well as soil quality.  However, the long-term effects of different straw incorporation practices on the SOC stock remain uncertain.  In this study, a long-term experiment (2007 to 2018) with four treatments (MW0: maize–wheat rotation with no straw incorporation, MW50: maize–wheat rotation with 50% chopped straw incorporation, MWb50: maize–wheat rotation with 50% in situ burned harvested straw, and MF50: maize–fallow rotation with 50% harvested maize straw incorporation) was set up to evaluate the response of the SOC stock to different straw incorporation methods.  The results showed that the SOC stock significantly increased by 32.4, 12.2 and 17.4% under the MW50, MWb50 and MF50 treatments, respectively, after continuous straw incorporation over a decade, while the SOC stock under MW0 was significantly reduced by 22.9% after the 11 year long-term experiment.  Compared to MW0, straw incorporation significantly increased organic carbon input, and improved the soil aggregate structure and the ratio of dissolved organic carbon (DOC) to particulate organic carbon (POC), but it did not significantly stimulate soil heterotrophic respiration, resulting in the increased SOC accumulation rate and SOC stocks of bulk soil.  The increased ratio of DOC to microbial biomass carbon (MBC) enhanced the relative abundances of Acidobacteria and Proteobacteria but inhibited Bacteroidetes and Chloroflexi, and the bacterial relative abundances were the main reasons for the non-significant increase or even decrease in soil heterotrophic respiration with straw incorporation.  The SOC stock would reach an equilibrium based on the results of Rothamsted carbon (RothC) model simulations, with a long-term equilibrium value of 18.85 Mg ha–1 under MW50.  Overall, the results of the long-term field experiment (2007–2018) and RothC model simulation suggested that maize–wheat rotation with 50% chopped straw incorporation delivered the largest benefits for the SOC stock in calcareous soils of subtropical mountain landscapes over the long term.


The enhancements of pore morphology and size distribution by straw return are mediated by increases in aggregate-associated carbon and nitrogen
Ying Zhao, Xiaozeng Han, Chen Qiu, Wenxiu Zou, Xinchun Lu, Jun Yan, Xu Chen
2025, 24(4): 1562-1576.  DOI: 10.1016/j.jia.2024.08.003
Abstract ( )   PDF in ScienceDirect  

The accumulation of soil organic carbon (SOC) and total nitrogen (TN) is easily accomplished by returning crop straw, which strongly affects the formation and pore structure of aggregates, especially in black soil.  We returned maize straw at different rates (6,000, 9,000, 12,000 and 15,000 kg ha–1) for nine years to investigate its influence on the SOC and TN contents in the SOC fractions of aggregates by combining size and density fractionation.  Their subsequent influences on pore morphology and size distribution characteristics were examined using X-ray micro-computed tomography scanning (μCT).  The results showed that returning straw significantly increased the contents of C and N in the SOC fractions of aggregates, especially at the return rates of 12,000 and 15,000 kg ha–1, which in turn promoted aggregate formation and stability, and ultimately amended pore structure.  The pore size>100 μm, porosity (>2 μm), and morphological characteristics (anisotropy, circularity, connectivity and fractal dimension) significantly increased, but the total number of pores significantly decreased (P<0.05).  Our results indicated that the amendment of the pore morphology and size distribution of soil aggregates was primarily controlled by the higher contents of C and N in the density fractions of aggregates, rather than in the aggregate sizes.  Furthermore, this pore network reconfiguration favored the storage of C and N simultaneously.  The findings of this study offer valuable new insights into the relationships between C and N storage and the pore characteristics in soil aggregates under straw return. 

A meta-analysis to explore the impact of straw decomposing microorganism inoculant-amended straw on soil organic carbon stocks
Chao Ma, Zhifeng He, Jiang Xiang, Kexin Ding, Zhen Zhang, Chenglong Ye, Jianfei Wang, Yusef Kianpoor Kalkhajeh
2025, 24(4): 1577-1587.  DOI: 10.1016/j.jia.2025.02.002
Abstract ( )   PDF in ScienceDirect  
Although the application of straw decomposing microorganism inoculants (SDMI) can accelerate straw decomposition, the underlying mechanisms affecting soil organic carbon (SOC) under different scenarios remain unclear.  We conducted a meta-analysis using 226 observations from 86 studies on SOC changes under straw return with or without SDMI applications.  Overall, our results indicated that straw with SDMI application increased the SOC stock by 1.51% at an initial carbon-to-nitrogen ratio (ICNR)>25 (P<0.05), while the effect of ICNR≤25 was insignificant.  In particular, at ICNR>25, application of SDMI-treated straw increased SOC stocks in northern temperate continental areas (NTC) higher than in subtropical monsoon regions (STM).  Furthermore, the straw with SDMI application increased higher SOC stocks in soils with pH>7.5 than those with pH≤7.5.  In terms of agricultural management practices, SOC stocks were significantly higher in straw buried (SB), the experimental duration of straw return (EDSR)≥1 year, the straw return amount (SRA)>6,000 kg ha–1, and the SDMI application rate (SDMIR)>30 kg ha–1 conditions.  The effect of straw with SDMI on SOC stocks under straw burying (SB) was significantly higher than that under straw mulching (SM) at ICNR≤25.  At ICNR>25, EDSR, SDMIR, and the mean annual precipitation (MAP) were the main drivers of the effect of SDMI addition to straw on SOC stocks.  Straw with SDMI induced SOC stock increases which increased with EDSR and decreased with increasing MAP.  These findings provide a scientific basis for decision-makers and stakeholders to improve soil C management via the application of SDMI-amended straw at both regional and large scales.  


The communities of arbuscular mycorrhizal fungi established by different winter green manures in paddy fields promote post-cropping rice production
Mengyan Cao, Shaoping Ye, Cheng Jin, Junkang Cheng, Yao Xiang, Yu Song, Guorong Xin, Chuntao He
2025, 24(4): 1588-1605.  DOI: 10.1016/j.jia.2024.07.035
Abstract ( )   PDF in ScienceDirect  
Winter planting green manures in southern China effectively improve soil properties and rice production through microbial community construction.  However, the effects of soil communities of arbuscular mycorrhizal fungi (AMF) from different winter planting green manures on the soil properties and post-cropping rice production remain unclear.  In this study, the soil AMF communities of three common winter planting patterns in southern China, winter fallow, winter ryegrass (Lolium multiflorum L.), and winter Chinese milk vetch (Astragalus sinicus L.), were explored and their effects on post-cropping rice production were investigated.  Compared with winter fallow, the winter ryegrass and winter Chinese milk vetch patterns could alleviate soil acidification, significantly increase soil AMF spore density, and improve the soil AMF community structure.  Based on sterilized soil, rice production indicators such as thousand-seed weight, theoretical yield, and the grain amylose and total sugar contents of rice inoculated with AMF spores from winter Chinese milk vetch soil were 6.68–53.57% higher than those without AMF inoculation.  Rice panicle weight, seed setting rate, and theoretical yield were 15.38–22.71% higher in the treatment with AMF spores from winter ryegrass soil than in the treatments with no AMF inoculation.  In addition, the protein, amylose, and total sugar contents of rice grains were 14.92, 104.82, and 802.23 mg kg–1, respectively, which were 31.31, 14.25 and 34.47% higher than those without AMF inoculation.  The AMF community dominated by Glomus and Acaulospora in winter Chinese milk vetch had a more positive effect on the improvement of rice yield, while the AMF community dominated by Glomus in winter ryegrass soil was more conducive to rice quality improvement.  These findings have revealed the critical role of AMF communities from green manure in rice production, which lays the theoretical basis for a promising strategy to promote the sustainable development of southern winter agriculture.


Letter
Creation of purple leaf peanut germplasm through metabolic engineering of the betalain biosynthesis pathway
Dongxin Huai, Jie Wu, Xiaomeng Xue, Hao Liu, Nian Liu, Li Huang, Liying Yan, Yuning Chen, Xin Wang, Qianqian Wang, Yanping Kang, Zhihui Wang, Yanbin Hong, Huifang Jiang, Boshou Liao, Yong Lei
2025, 24(4): 1606-1609.  DOI: 10.1016/j.jia.2024.09.034
Abstract ( )   PDF in ScienceDirect  

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