Álvarez-Carretero S, Kapli P, Yang Z. 2023. Beginner's guide on the use of PAML to detect positive selection. Molecular Biology and Evolution, 40, msad041.
Carpenter J E. 2010. Peer-reviewed surveys indicate positive impact of commercialized GM crops. Nature Biotechnology, 28, 319–321.
Carrière Y, Crickmore N, Tabashnik B E. 2015. Optimizing pyramided transgenic Bt crops for sustainable pest management. Nature Biotechnology, 33, 161–168.
Chen X, Palli S R. 2021. Hyperactive piggyBac transposase-mediated germline transformation in the fall armyworm, Spodoptera frugiperda. Journal of Visualized Experiments, 175, e62714.
van Deventer S J, Dunlock V E, van Spriel A B. 2017. Molecular interactions shaping the tetraspanin web. Biochemical Society Transactions, 45, 741–750.
van Dijk E L, Auger H, Jaszczyszyn Y, Thermes C. 2014. Ten years of next-generation sequencing technology. Trends in Genetics, 30, 418–426.
Fabrick J A, Wu Y D. 2023. Mechanisms and molecular genetics of insect resistance to insecticidal proteins from Bacillus thuringiensis. Advances in Insect Physiology, 65, 123-183.
Fraser M J, Ciszczon T, Elick T, Bauser C. 1996. Precise excision of TTAA-specific lepidopteran transposons piggyBac (IFP2) and tagalong (TFP3) from the baculovirus genome in cell lines from two species of Lepidoptera. Insect Molecular Biology, 5, 141–151.
Garcia-España A, Chung P J, Sarkar I N, Stiner E, Sun T T, Desalle R. 2008. Appearance of new tetraspanin genes during vertebrate evolution. Genomics, 91, 326–334.
Gregory M, Alphey L, Morrison N I, Shimeld S M. 2016. Insect transformation with piggyBac: Getting the number of injections just right. Insect Molecular Biology, 25, 259–271.
Guan F, Dai X G, Hou B F, Wu S W, Yang Y H, Lu Y H, Wu K M, Tabashnik B E, Wu Y D. 2023b. Refuges of conventional host plants counter dominant resistance of cotton bollworm to transgenic Bt cotton. iScience, 26, 106768
Guan F, Dai X G, Yang Y H, Tabashnik B E, Wu Y. 2023a. Population genomics of nonrecessive resistance to Bt toxin Cry1Ac in Helicoverpa armigera from northern China. Journal of Economic Entomology, 116, 310–320.
Guan F, Hou B F, Dai X G., Liu S T, Liu J J, Gu Y, Jin L, Yang Y H, Fabrick J A, Wu Y D. 2021. Multiple origins of a single point mutation in the cotton bollworm tetraspanin gene confers dominant resistance to Bt cotton. Pest Management Science, 77, 1169–1177.
Guo B F, Guo Y, Hong H L, Qiu L J. 2016. Identification of genomic insertion and flanking sequence of G2-EPSPS and GAT transgenes in soybean using whole genome sequencing method. Frontiers in Plant Science, 7, 1009.
Huang S F, Tian H Z, Chen Z L, Yu T, Xu A L. 2010. The evolution of vertebrate tetraspanins: Gene loss, retention, and massive positive selection after whole genome duplications. BMC Evolutionary Biology, 10, 306.
Huang S F, Yuan S C, Dong M L, Su J, Yu C L, Shen Y, Xie X J, Yu Y H, Yu X S, Chen S W, Zhang S C, Pontarotti P, Xu A L. 2005. The phylogenetic analysis of tetraspanins projects the evolution of cell-cell interactions from unicellular to multicellular organisms. Genomics, 86, 674–684.
Ji J B, Braam J. 2010. Restriction site extension PCR: A novel method for high-throughput characterization of tagged DNA fragments and genome walking. PLoS ONE, 5, e10577.
Jin L, Wang J, Guan F, Zhang J P, Yu S, Liu S Y, Xue Y Y, Li L L, Wu S W, Wang X L, Yang Y H, Abdelgaffar H, Jurat-Fuentes J L, Tabashnik B E, Wu Y D. 2018. Dominant point mutation in a tetraspanin gene associated with field-evolved resistance of cotton bollworm to transgenic Bt cotton. Proceedings of the National Academy of Sciences of the United States of America, 115, 11760–11765.
Jin L, Zhang H N, Lu Y H, Yang Y H, Wu K M, Tabashnik B E, Wu Y D. 2015. Large-scale test of the natural refuge strategy for delaying insect resistance to transgenic Bt crops. Nature Biotechnology, 33, 169–174.
Jurat-Fuentes J L, Heckel D G, Ferré J. 2021. Mechanisms of resistance to insecticidal proteins from Bacillus thuringiensis. Annual Review of Entomology, 66, 121–140.
Kathage J, Qaim M. 2012. Economic impacts and impact dynamics of Bt (Bacillus thuringiensis) cotton in India. Proceedings of the National Academy of Sciences of the United States of America, 109, 11652–11656.
Kim A, Pyykko I. 2011. Size matters: Versatile use of PiggyBac transposons as a genetic manipulation tool. Molecular and Cellular Biochemistry, 354, 301–309.
Levy S, Shoham T. 2005. Protein-protein interactions in the tetraspanin web. Physiology, 20, 218–224.
Li L, Pang X R, Wang C Y, Yang Y H, Wu Y D. 2024. piggyBac-based transgenic Helicoverpa armigera expressing the T92C allele of the tetraspanin gene HaTSPAN1 confers dominant resistance to Bacillus thuringiensis toxin Cry1Ac. Pesticide Biochemistry and Physiology, 204, 106096.
Li L, Zuo Y Y, Shi Y, Yang Y H, Wu Y D. 2023. Overexpression of the F116V allele of CYP9A186 in transgenic Helicoverpa armigera confers high-level resistance to emamectin benzoate. Insect Biochemistry and Molecular Biology, 163, 104042.
Liu Y, Tabashnik B E. 1997. Inheritance of resistance to the Bacillus thuringiensis toxin Cry1C in the diamondback moth. Applied and Environmental Microbiology, 63, 2218–2223.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods, 25, 402–408.
Lu Y H, Wu K M, Jiang Y Y, Guo Y Y, Desneux N. 2012. Widespread adoption of Bt cotton and insecticide decrease promotes biocontrol services. Nature, 487, 362–365.
Mitra R, Fain-Thornton J, Craig N L. 2008. piggyBac can bypass DNA synthesis during cut and paste transposition. The EMBO Journal, 27, 1097–1109.
Nguyen L T, Schmidt H A, von Haeseler A, Minh B Q. 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274
Ochman H, Gerber A S, Hartl D L. 1988. Genetic applications of an inverse polymerase chain reaction. Genetics, 120, 621–623.
Park D, Kim D, Jang G, Lim J, Shin Y J, Kim J, Seo M S, Park S H, Kim J K, Kwon T H, Choi I Y. 2015. Efficiency to discovery transgenic loci in GM rice using next generation sequencing whole genome re-sequencing. Genomics & Informatics, 13, 81–85.
Polko J K, Temanni M R, van Zanten M, van Workum W, Iburg S, Pierik R, Voesenek L A, Peeters A J. 2012. Illumina sequencing technology as a method of identifying T-DNA insertion loci in activation-tagged Arabidopsis thaliana plants. Molecular Plant, 5, 948–950
Sanahuja G, Banakar R, Twyman R M, Capell T, Christou P. 2011. Bacillus thuringiensis: A century of research, development and commercial applications. Plant Biotechnology Journal, 9, 283–300.
Tabashnik B E, Fabrick J A, Carrière Y. 2023. Global patterns of insect resistance to transgenic Bt crops: The first 25 years. Journal of Economic Entomology, 116, 297–309.
Tarrant J M, Robb L, van Spriel A B, Wright M D. 2003. Tetraspanins: Molecular organisers of the leukocyte surface. Trends in Immunology, 24, 610–617.
Todres E, Nardi J B, Robertson H M. 2000. The tetraspanin superfamily in insects. Insect Molecular Biology, 9, 581–590.
Wang C Y, Zhang Y N, Guan F, He Y Z, Wu Y D. 2024. Genome-wide identification and phylogenetic analysis of the tetraspanin gene family in lepidopteran insects and expression profiling analysis in Helicoverpa armigera. Insect Science, doi:10.1111/1744-7917.13402
Wang J, Zhang H N, Wang H D, Zhao S, Zuo Y Y, Yang Y H, Wu Y D. 2016. Functional validation of cadherin as a receptor of Bt toxin Cry1Ac in Helicoverpa armigera utilizing the CRISPR/Cas9 system. Insect Biochemistry and Molecular Biology, 76, 11–17.
Yang Y H, Yang Y J, Gao W Y, Guo J J, Wu Y H, Wu Y D. 2009. Introgression of a disrupted cadherin gene enables susceptible Helicoverpa armigera to obtain resistance to Bacillus thuringiensis toxin Cry1Ac. Bulletin of Entomological Research, 99, 175–181.
Yang Z H. 2002. Inference of selection from multiple species alignments. Current Opinion in Genetics & Development, 12, 688–694.
Yang Z H. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586–1591.
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