Scientia Agricultura Sinica ›› 2015, Vol. 48 ›› Issue (15): 2911-2924.doi: 10.3864/j.issn.0578-1752.2015.15.002

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Negative Regulation of Anthocyanin Biosynthesis in Tomato by MicroRNA828 Under Phosphate Deficiency

JIA Xiao-yun1,2, LIU Hui1, SHEN Jie1, LI Fang1, DING Na1, SUN Yan1, GAO Chang-yong2, LI Run-zhi2   

  1. 1College of Life Science, Shanxi Agricultural University, Taigu 030801, Shanxi 
    2Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu 030801, Shanxi
  • Received:2015-02-17 Online:2015-08-01 Published:2015-08-01

Abstract: 【Objective】 In this study, the responses of miR828 and its targets to phosphate deficiency and the role of miR828 in anthocyanin biosynthesis under phosphate deficiency were investigated by using wild-type and miR828 overexpressed transgenic tomatoes. 【Method】 The potential targets of miR828 were predicted and validated by psRNATarget and RLM-5′RACE, respectively. An alignment of deduced amino acid sequences of SlMYB7-like with orthologs from Arabidopsis thaliana (AtMYB7) and Antirrhinum majus (AmMYB330) was constructed using MegAlign of DNAStar. The phylogenetic tree of SlMYB7-like and the selected R2R3 MYBs was constructed using neighbor-joining method using MEGA5. The expressions of miR828 and SlMyb7-like in AC, MicroTom and LA1996 tomato seedlings were analyzed. The expression of miR828 in different tissues/organs of tomato (AC) was analyzed by qRT-PCR. Wild-type and miR828 overexpressed transgenic tomatoes were cultured under normal phosphate (KH2PO4 3.4 g·L-1) and phosphate deficiency (KCl 1.86 g·L-1) for 15 d. The phenotypic changes and the expression of miR828, SlMyb7-like (SGN-U320618), several anthocyanin biosynthetic genes as well as the anthocyanin content were detected. 【Result】SlMyb7-like was validated to be a direct target of miR828. Protein sequence analysis showed that the SlMYB7-like protein shares the highest homology with the Arabidopsis subgroup 4 MYB7 (AtMYB7), and Snapdragon MYB330, having more than 80% sequence similarity. Phylogenetic analysis grouped SlMYB7-like in a clade with AtMYB7 and AmMYB330. SlMYB7-like contains the conserved amino acid motif ([D/E]LX2[R/K]X3LX6L X3R/DLIVRLHSLLGNRWSLIAGR), a signature feature common to subgroup 6 R2R3 MYBs (AtMYB75/90/113) that are involved in anthocyanin biosynthesis. The highest abundance of miR828 was detected in MicroTom seedlings, where the transcript of its target gene (SlMyb7-like) was accumulated the lowest. The expression of miR828 in different tissues of tomato tested was very low with relatively higher levels in buds, flowers and green fruits. Under the normal phosphate condition, the expression of anthocyanin biosynthetic genes in the miR828 over-expressed tomatoes decreased by 30%-60% and the content of anthocyanin decreased by 40%. Phosphate deficiency induced both the expression of miR828 and SlMyb7-like. The expression of SlMyb7-like, anthocyanin biosynthetic genes and the content of anthocyanin in the miR828 overexpressed tomatoes were lower than that in control plants under phosphate deficiency. The above data suggest that miR828 negatively regulates the anthocyanin biosynthesis in tomato under phosphate deficiency.【Conclusion】SlMyb7-like is a direct target gene of miR828. Both the expressions of miR828 and SlMyb7-like are induced under phosphate deficiency. MiR828 negatively controls anthocyanin pathway by repressing the expression of SlMyb7-like, and thereby negatively regulating anthocyanin biosynthetic genes in tomato under phosphate deficiency.

Key words: tomato, phosphate deficiency, miR828, SlMyb7-like, anthocyanin

[1]    Mes P J, Boches P, Myers J R, Durst R. Characterization of tomatoes expressing anthocyanin in the fruit. Journal of the American Society for Horticultural Science, 2008, 133: 262-269.
[2]    Gou J Y, Felippes F F, Liu C J, Weigel D, Wang J W. Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. The Plant Cell,2011, 23: 1512-1522.
[3]    Jones-Rhoades M W, Bartel D P, Bartel B. MicroRNAs and their regulatory roles in plants. Annual Review of Plant Biology, 2006, 57: 19-53.
[4]    Matzke M, Kanno T, Daxinger L, Huettel B, Matzke A J. RNA-mediated chromatin-based silencing in plants. Current Opinion in Cell Biology,2009, 21: 367-376.
[5]    Xia R, Zhu H, An Y Q, Beers E P, Liu Z. Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biology, 2012, 13: R47.
[6]    Zuluaga D L, Gonzali S, Loreti E, Pucciariello C, Degl'innocenti E, Guidi L, Alpi A, Perata P. Arabidopsis thaliana MYB75/PAP1 transcription factor induces anthocyanin production in transgenic tomato plants. Functional Plant Biology,2008, 35: 606-618.
[7]    Butelli E, Titta L, Giorgio M, Mock H, Matros A, Peterek S, Schijlen E G, Hall R D, Bovy A G, Luo J, Martin C. Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors. Nature Biotechnology,2008, 26: 1301-1308.
[8]    Sunkar R, Zhu J K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. The Plant Cell, 2004, 16(8): 2001-2019.
[9]    Bari R, Datt Pant B, Stitt M, Scheible W R. PHO2, microRNA399 and PHR1 define a phosphate-signaling pathway in plants. Plant Physiology, 2006, 141(3): 988-999.
[10]   Chiou T J, Aung K, Lin S I, Wu C C, Chiang S F, Su C L. Regulation of phosphate homeostasis by microRNA in Arabidopsis. The Plant Cell, 2006, 18: 412-421.
[11]   Rajagopalan R, Vaucheret H, Trejo J, Bartel D P. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes & Development, 2006, 20: 3407-3425.
[12]   Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher R L, Moulton V, Dalmay T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome research, 2008, 18: 1602-1609.
[13] Guan X, Pang M, Nah G, Shi X, Ye W, Stelly D M, Chen Z J. miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development. Nature Communications, 2014, 5: 3050.
[14]   Luo Q J, Mittal A, Jia F, Rock C D. An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Molecular Biology, 2012, 80: 117-129.
[15]   Hsieh L C, Lin S I, Shih A C, Chen J W, Lin W Y, Tseng C Y, Li W H, Chiou T J. Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiology, 2009, 151: 2120-2132.
[16]   Borevitz J O, Xia Y, Blount J, Dixon R A, Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. The Plant Cell,2000, 12: 2383-2394.
[17]   Yang F X, Cai J, Yang Y, Liu Z B. Overexpression of microRNA828 reduces anthocyanin accumulation in Arabidopsis. Plant Cell Tissue Organ Culture, 2013, 115: 159-167.
[18]   Livak K J, Schmittgen T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods, 2001, 25: 402-408.
[19]   谢烨, 孙毅, 李淡宁, 黄继荣. 拟南芥MicroRNA828负调控蔗糖诱导的花青素合成. 植物生理学报, 2013, 49(2): 188-194.
Xie Y, Sun Y, Li D N, Huang J R. MicroRNA828 negatively regulates sucrose-induced anthocyanin biosynthesis in Arabidopsis. Plant Physiology Journal, 2013, 49(2): 188-194. (in Chinese)
[20]   Lin J S, Lin C C, Lin H H, Chen Y C, Jeng S T. MicroR828 regulates lignin and H2O2 accumulation in sweet potato on wounding. New Phytologist, 2012, 196: 427-440.
[21]   周芳名. 丹参micoR828全长基因的克隆、表达分析及遗传转化[D]. 重庆: 西南大学, 2013.
Zhou F M. Cloning, expression analysis and genetic transformation of microR828 in Salvia miltiorrhiza[D]. Chongqing: Southwest University, 2013. (in Chinese)
[22]   刘伟伟, 于丽丽, 方媛, 周莹, 李洋, 周波. 番茄microRNA828的克隆表达及其靶基因的鉴定. 园艺学报, 2015, 42(1): 47-55. 
Liu W W, Yu L L, Fang Y, Zhou Y, Li Y, Zhou B. Clone and expression analysis of LemiR828 and identification of its target gene in tomato. Acta Horticulturae Sinica, 2015, 42(1): 47-55. (in Chinese)
[23]   Chen H M, Chen L T, Patel K, Li Y H, Baulcombe D C, Wu S H. 22-nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proceedings of the National Academy of Sciences of the United States of America,2010, 107: 15269-15274.
[24]   Jia X Y, Shen J, Liu H, Li F, Ding N, Gao C Y, Pattanaik P, Patra P, Li R Z, Yuan L.Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato. Planta, 2015, 242(1): 283-293.
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