Scientia Agricultura Sinica ›› 2021, Vol. 54 ›› Issue (20): 4299-4311.doi: 10.3864/j.issn.0578-1752.2021.20.005

• TILLAGE & CULTIVATION·PHYSIOLOGY & BIOCHEMISTRY·AGRICULTURE INFORMATION TECHNOLOGY • Previous Articles     Next Articles

Remote Sensing Estimation of Cotton Biomass Based on Parametric and Nonparametric Methods by Using Hyperspectral Reflectance

ZHOU Meng(),HAN XiaoXu,ZHENG HengBiao,CHENG Tao,TIAN YongChao,ZHU Yan,CAO WeiXing,YAO Xia()   

  1. Nanjing Agricultural University/National Engineering and Technology Center for Information Agriculture, Nanjing 210095
  • Received:2020-11-25 Accepted:2021-02-28 Online:2021-10-16 Published:2021-10-25
  • Contact: Xia YAO E-mail:2017101176@njau.edu.cn;yaoxia@njau.edu.cn

Abstract:

【Objective】The aim of this experiment was to use hyperspectral remote sensing data to estimate cotton biomass quickly and non-destructively, and to assess the performance differences between parameterized and non-parametric algorithms on cotton. 【Method】This experiment was based on the dataset of four cotton varieties in two years (2004 and 2005), and the two-year data were modeled and verified respectively. The biomass estimation models in different periods (before and after boll opening) were built by utilizing parameterized algorithms, including vegetation index method and continuous wavelet transform, and non-parameterized algorithms, including partial least squares regression, random forest, artificial neural network, regression tree, bag tree and enhanced tree, support vector machine and Gaussian process regression, respectively. 【Result】Near-infrared and red edge bands were still the most effective bands in monitoring cotton biomass of remote sensing. The parameterized method was simple, efficient and accurate. Among the parametric methods, CIred edge was proved to be the best vegetation index for cotton biomass estimation with high independent verification results (before boll opening: RMSE=27.23 g·m-2; after boll opening: RMSE=48.81 g·m -2). The result based on continuous wavelet transform alleviated the underestimation phenomenon of vegetation index, especially after boll opening (before boll opening: RMSE=31.54 g·m -2; after boll opening: RMSE=37.57 g·m -2). Among the non-parametric methods, the random forest was the best algorithm for cotton biomass estimation (before boll opening: RMSE=20.48 g·m -2; after boll opening: RMSE=30.28 g·m -2). The estimation accuracy of the two types of algorithms was affected by cotton wool, and the estimation accuracy after boll opening was significantly lower than before boll opening. 【Conclusion】In this study, the cotton biomass estimation models based on parameterized and non-parameterized algorithms were evaluated, and it was proved that the non-parameterized algorithm had high inversion accuracy and could be used as an important method for non-destructive monitoring of cotton biomass.

Key words: biomass, hyperspectral, vegetation index, continuous wavelet, machine learning, cotton

Table 1

Summary of cotton biomass measured data in two experiments"

试验
Experiment
样点数
Number of samples
生物量Biomass (g·m-2)
最低值Min 平均值Mean 最大值Max
试验1 Experiment 1 100 14.4 50.9 140.9
试验2 Experiment 2 80 20.0 95.5 155.2

Table 2

Algorithm of different hyperspectral vegetation indices"

植被指数
Vegetation index
名称
Name
公式
Formula
文献
Reference
DI 差值指数 Difference index R800 -R550 [26]
DVI 差值植被指数 Difference vegetation index R800 -R680 [27]
RVI 比值植被指数 Ratio vegetation index R787/R765 [5]
SRPI 简单比值色素指数 Simple ratio pigment index R430 /R680 [28]
NPCI 叶绿素归一化植被指数 Chlorophyll normalized vegetation index (R680-R430)/(R680+R430) [29]
MTCI 中分辨率陆地叶绿素成像指数 MERIS terrestrial chlorophyll index (R750-R710)/(R710-R680) [30]
DATT DATT (R800-R720)/( R800 -R680) [31]
CIred edge 红边叶绿素指数 Red edge chlorophyll index (R800 /R720)- 1 [32]
NDVI 归一化植被指数 Normalized vegetation index (R780-R670)/(R780-R670) [33]
GNDVI 绿色归一化植被指数 Green normalized vegetation index (R801-R550)/(R800+R550) [34]
EVI 增强型植被指数 Enhanced vegetation index 2.5×(RNIR /RRED )/(RNIR+6.0×RRED-7.5×RBLUE+1) [35]
OSAVI 优化土壤调整植被指数 Optimized soil-adjusted vegetation index 1.16×(RNIR-RRED)/(RNIR+RRED+0.16) [36]
PRI 光化学植被指数 Physiological reflectance index (R531-R570)/(R530+R570) [37]
TVI 三角形植被指数 Triangle vegetation index 0.5×[120×(R750-R550)-200×(R670-R550)] [38]

Table 3

Non-parametric algorithm"

算法
Algorithms
核心算法
Core algorithm
文献
Reference
PLSR Matrix inversion [39]
RF Bootstraping [40]
ANN Levenberg-Marquardt algorithm [41]
RT Sorting & grouping [42]
BaT Bootstrap aggregation (bagging) + RT [43]
BoT Least squares boosting + RT [44]
SVM Bayesian statistical inference [20]
GPR Bayesian statistical inference [45]

Fig. 1

The correlation coefficient between spectral reflectance and biomass of different cotton varieties at different phenological stages"

Table 4

Correlation between vegetation indices and cotton biomass"

植被指数
Vegetation index
相关系数 Correlation coefficient 植被指数
Vegetation index
相关系数 Correlation coefficient
吐絮前
Before boll opening
吐絮后
After boll opening
吐絮前
Before boll opening
吐絮后
After boll opening
GNDVI 0.67** 0.55** PRI 0.23** 0.28*
DATT 0.63** 0.55** RVI 0.26** 0.03
CIred edge 0.59** 0.53** EVI 0.15** 0.30**
MTCI 0.56** 0.50** OSAVI 0.18** 0.33**
SRPI 0.34** 0.43** DI 0.13** 0.16**
NPCI -0.34** -0.42** DVI 0.07 0.14*
NDVI 0.29** 0.36** TVI 0.04 0.10*

Fig. 2

Cotton biomass plotted against best vegetation index a: GNDVI, b: DATT, c: CIred edge, the blue dotted line and red dotted line are the best-fit function of the data points before and after boll opening, respectively"

Fig. 3

Comparison of the predicted value and the measured value of the best vegetation index monitoring cotton biomass for the whole senson"

Fig. 4

Correlation coefficient between CWT wavelet features and cotton biomass"

Table 5

Cotton biomass monitoring model based on different scales of CWT"

时期
Stage
波段
Band (nm)
尺度
Scale
模型
model
决定系数
Coefficient of determination (R2)
验证 Validation
R2 RMSE (g·m-2)
吐絮前
Before boll opening
1202 3 y = 11.96e-197.80x 0.41** 0.57 38.43
1209 4 y = 11.11e-68.73x 0.48** 0.63 31.54
720 5 y = 60.34e-3.52x 0.58** 0.59 34.56
722 6 y=44.45e-4.19x 0.59** 0.58 36.47
吐絮后
After boll opening
1202 3 y = 8.63e-259.6x 0.40** 0.50 36.49
1209 4 y = 9.40e-78.69x 0.40** 0.48 37.57
720 5 y = 78.25e-3.49x 0.46** 0.55 48.41
722 6 y=53.43e-4.80x 0.55** 0.54 39.50

Fig. 5

Comparison of the predicted value and the measured value of the best wavelet features for monitoring cotton biomass for the whole season"

Table 6

Calibration and validation results of estimation models for cotton biomass based on non-parametric modeling algorithms"

方法
Methods
吐絮前Before boll opening 吐絮后After boll opening
建模集Modeling 预测集Predicting 建模集Modeling 预测集Predicting
R2 RMSE (g·m-2) R2 RMSE(g·m-2) R2 RMSE (g·m-2) R2 RMSE (g·m-2)
RF 0.76 11.14 0.53 20.48 0.57 16.43 0.65 30.28
SVM 0.84 7.47 0.44 33.55 0.67 14.61 0.54 44.25
GPR 0.85 7.28 0.38 29.16 0.38 19.49 0.39 53.84
BaT 0.72 9.30 0.24 39.92 0.41 17.89 0.35 51.61
BoT 0.96 3.56 0.22 39.71 0.91 7.73 0.36 51.38
RT 0.94 5.06 0.30 40.99 0.90 9.32 0.42 54.53
PLSR 0.43 15.91 0.13 30.28 0.35 23.79 0.19 30.59
ANN 0.83 9.76 0.57 38.09 0.69 23.41 0.42 51.99

Fig. 6

Comparison of the predicted value and the measured value of cotton biomass with RF"

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