Scientia Agricultura Sinica ›› 2020, Vol. 53 ›› Issue (12): 2331-2339.doi: 10.3864/j.issn.0578-1752.2020.12.002

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Expression Analysis of the Chlorophyll Biosynthesis Structural Genes in Green and White Foxtail Millet [Setaria italica (L.) Beauv]

ZHANG Bin,LI Meng,LIU Jing,WANG JunJie,HOU SiYu,LI HongYing,HAN YuanHuai()   

  1. College of Agriculture, Shanxi Agricultural University, Taigu 030800, Shanxi
  • Received:2019-11-03 Online:2020-06-16 Published:2020-06-25
  • Contact: YuanHuai HAN E-mail:swgctd@163.com

Abstract:

【Objective】 The phenotypic differences of millet color in foxtail millet is caused by the different kinds of pigment accumulation in grains. The phenotype of millet color, the indicators from color system, the chlorophyll contents, the ultra-structure of inner grains, and the expression profile of chlorophyll biosynthesis related genes were compared and analyzed between the green and white millet varieties. Our main objectives are to find the key gene causing the millet color difference between green and white millet, and to explore the mechanism for the formation of green millet color. 【Method】 In this study, the millet color indicators (L*, a*, b*)were determined using the color system. The Chla, Chlb, and Chl contents in grains were measured by spectrophotometer separately, and the inner ultra-structure including the size and numbers of the starch and chromoplast in the foxtail millet grains were observed and analyzed at mid stage of grouting by transmission electron microscope. Meanwhile, the expression patterns of 18 genes distributing in the upstream and downstream of the chlorophyll biosynthesis were analyzed among three varieties with different millet color by qRT-PCR. The SiCAO gene was separately cloned from three varieties with the DNA of seedling leaves as templates, and then were compared with each other. 【Result】 Hunted millet of Daqinggu and Lumiqinggu were green colors, and the a* color indicators of them were lower than Niumaobai with white millet color. The Chla, Chlb and Chlcontains in the grains of green varieties were all significantly higher than white variety, and only 0.006 mg·g-1 Chlb were detected in white variety. The results of qRT-PCR showed that the expression of SiCAO gene couldn’t be detected in white variety, but it had high expression levels in two green varieties. The significant different expression level of SiCAO was one of the important reasons leading to the color difference between two millet color millet varieties. The SiCAO gene with an open reading frame of 1626 bp was separately cloned from three varieties, and their sequences showed differences at 171, 184, 195, 286 and 318 amino acid sites. Simultaneously, ultra-structural observations indicated that the endosperm layer of the grain is mainly consisting of the single-amyloplast. Compared with the white variety, the starch in green varieties were bigger and darker, and surrounded by more chromoplasts and spherosomes, and these differences might affect the pigments accumulations in grains. 【Conclusion】 SiCAO, which is over-expressed in green varieties but not expressed in white variety, is one of the important reasons that causing different amount of chlorophyll contents accumulation leading to green and white millet colors.

Key words: foxtail millet, chlorophyll, biosynthesis, SiCAO, ultra-structure

Fig. 1

The phenotype comparison between white and green millet varieties A: Niumaobai; B: Daqinggu; C: Lumiqinggu"

Table 1

The color indicators of different foxtail millet varieties"

小米品种Millet varieties 亮度值L* 黄/蓝度值a* 红/绿度值b*
NMB 66.91±0.12a 4.99±0.10a 28.95±0.26a
DQG 43.92±0.50b 2.66±0.14b 22.97±0.29c
LMQG 41.10±0.18c 2.93±0.07b 25.31±0.48b

Fig. 2

The comparison of chlorophyll contents in different millet color varieties NMB: Niumaobai; DQG: Daqinggu; LMQG: Lumiqinggu. Different letters indicate a statistically significant difference (Dunnett’s test, P<0.05). The same as below"

Fig. 3

Quantitative real-time RT-PCR analysis of the expression profiling of the chlorophyll biosynthetic genes in white cultivate NMB and green cultivates DQG and LMQG"

Fig. 4

Protein sequence alignment of SiCAO in NMB, DQG and LMQG"

Fig. 5

Ultrastructure of white and green millet grains A: Grain of white millet; B: Grain of green millet. S: Starch"

[1] 于忠香, 唐绂宸. 特异谷子新品种——绿小米. 广东农村实用技术, 2005(12):20.
YU Z X, TANG F C. New and specific foxtail millet variety-Green millet. Guangdong Rural Practical Technology, 2005(12):20. (in Chinese)
[2] ZHANG G, LIU X, QUAN Z W, CHENG S F, XU X, PAN S K, XIE M, ZENG P, YUE Z, WANG W L, TAO Y, BIAN C, HAN C L, XIA Q J, PENG X H, CAO R, YANG X H, ZHAN D L, HU J C, ZHANG Y X, LI H N, LI H, Li N, WANG J Y, WANG C C, WANG R Y, GUO T, CAI Y J, LIU C Z, XIANG H T, SHI Q X, HUANG P, CHEN Q C, LI Y R, WANG J, ZHAO Z H, WANG J. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nature Biotechnology, 2012,30(6):549-554.
doi: 10.1038/nbt.2195
[3] YANG X Y, WAN Z W, PERRY L, LU H Y, WANG Q, ZHAO C H, LI J, XIE F, YU J C, CUI T X, WANG T, LI M Q, GE Q S. Early millet use in northern China. Proceedings of the National Academy of Sciences of the United States of America, 2012,109(10):3726-3730.
doi: 10.1073/pnas.1115430109
[4] DWIVEDI S, UPADHYAYA H, SENTHILVEL S, CHARLES T H. Millets: Genetic and genomic resources. Plant Breeding Reviews, 2012,35(1):247-375.
[5] HE L, ZHANG B, WANG X C, LI H Y, HAN Y H. Foxtail millet: Nutritional and eating quality, and prospects for genetic improvement. Frontiers of Agricultural Science and Engineering, 2015,2(2):124-133.
doi: 10.15302/J-FASE-2015054
[6] JUNG K H, HUR J, CHOONG-HWAN R Y U, YOUNGJU C, YONG-YOON C, AKIO M, HIROHIKO H, GYNHEUNG A. Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system. Plant and Cell Physiology, 2003,44(5):463-472.
doi: 10.1093/pcp/pcg064 pmid: 12773632
[7] NAGATA N, TANAKA R, SSTOH S, TANAKA A. Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of prochlorococcus species. The Plant Cell, 2005,17(1):233-240.
doi: 10.1105/tpc.104.027276 pmid: 15632054
[8] 黄寿吾. 叶绿素的药理和临床应用. 食品与药品, 2006,8(4):5-8.
HUANG S W. Pharmacology and clinical application of chlorophyll. Food and Drug, 2006,8(4):5-8. (in Chinese)
[9] KUMAR A M, SOLL D. Antisense HEMA1 RNA expression inhibits heme and chlorophyll biosynthesis in Arabidopsis. Plant Physiology, 2000,122(1):49-56.
doi: 10.1104/pp.122.1.49 pmid: 10631248
[10] TANAKA, ITO H, TANAKA R, TANAKA N K, YOSHIDA K, OKADA K. Chlorophyll a oxygenase (CAO) is involved in chlorophyll b formation from chlorophyll a. Proceedings of the National Academy of Sciences of the United States of America, 1998,95(21):12719-12723.
doi: 10.1073/pnas.95.21.12719 pmid: 9770552
[11] ECKHARDT U, GRIMM B, HORTENSTEINER S. Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Plant Molecular Biology, 2004,56(1):1-14.
doi: 10.1007/s11103-004-2331-3
[12] SICHUL L, JIN-HONG K, EUN S Y, CHOON-HWAN L, HIROHIKO H, GYNHEUNG A. Differential regulation of chlorophyll a oxygenase genes in rice. Plant Molecular Biology, 2005,57(6):805-818.
doi: 10.1007/s11103-005-2066-9
[13] BEALE S. Green genes gleaned. Trend in Plant Science, 2005,10(7):309-312.
doi: 10.1016/j.tplants.2005.05.005
[14] REINBOTHE S, REINBOTHE C. The regulation of enzymes involved in chlorophyll biosynthesis. European Journal of Biochemistry, 1996,237:323-343.
doi: 10.1111/j.1432-1033.1996.00323.x pmid: 8647070
[15] SHEN R, YANG S P, ZHAO G H, SHEN Q, DIAO X M. Identification of carotenoids in foxtail millet (Setaria italica) and the effects of cooking methods on carotenoid content. Journal of Cereal Science, 2015,61:86-93.
doi: 10.1016/j.jcs.2014.10.009
[16] ARNON D I. Copper enzymes in isolated chloroplasts: Polyphenoloxidase in Beta vulgaris. Plant Physiology, 1949,24(1):1-15.
doi: 10.1104/pp.24.1.1 pmid: 16654194
[17] LIVAK K J, Schmittgen T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) Method. Method, 2001,25(4):402-408.
doi: 10.1006/meth.2001.1262
[18] KECK R W, DILLEY R A, ALLEN C F, BIGGS S. Chloroplast composition and structure differences in a soybean mutant. Plant Physiology, 1970,46(5):692-698.
doi: 10.1104/pp.46.5.692 pmid: 16657531
[19] 李慕男, 兰凤英. 小米的营养成分及保健功能研究进展. 河北北方学院学报, 2017,33(7):56-60.
LI M N, LAN F Y. Nutritional health function and product development of millet. Journal of Hebei North University, 2017,33(7):56-60. (in Chinese)
[20] 王海岗, 贾冠清, 智慧, 温琪汾, 董俊丽, 陈凌, 王君杰, 曹晓宁, 刘思辰, 王纶, 乔治军, 刁现民. 谷子核心种质表型遗传多样性分析及综合评. 作物学报, 2016,42(1):19-30.
doi: 10.3724/SP.J.1006.2016.00019
WANG H G, JIA G Q, ZHI H, WEN Q F, DONG J L, CHEN L, WANG J J, CAO X N, LIU S C, WANG L, QIAO Z J, DIAO X M. Phenotypic Diversity evaluations of foxtail millet core collections. Acta Agronomica Sinica, 2016,42(1):19-30. (in Chinese)
doi: 10.3724/SP.J.1006.2016.00019
[21] ZHOU S, HU Z, ZHU M K, ZHANG B, DENG L, PAN Y, CHEN G P. Biochemical and molecular analysis of a temperature-sensitive albino mutant in kale named ‘‘White Dove’’. Plant Growth Regulation, 2013,71(3):281-294.
doi: 10.1007/s10725-013-9829-0
[22] 王平荣, 张帆涛, 高家旭, 孙小秋, 邓晓建. 高等植物叶绿素生物合成的研究进展. 西北植物学报, 2009,29(3):207-214.
WANG P R, ZHANG F T, GAO J X, SUN X Q, DENG X J. An overview of chlorophyll biosynthesis in higher plants. Acta Botanica Boreali-Occidentalia Sinica, 2009,29(3):207-214. (in Chinese)
[23] COMAH J E, TERRY M J, SMITH A G. Green or red: What stops the traffic in the tetrapyrrole pathway?. Trends in Plant Science, 2003,8(5):224-230.
doi: 10.1016/S1360-1385(03)00064-5 pmid: 12758040
[24] BOUGRI O, GRIMM B. Members of a low-copy number gene family encoding glutamyl-tRNA reductase are differentially expressed in barley. The Plant Journal, 1996,9(6):867-878.
doi: 10.1046/j.1365-313x.1996.9060867.x pmid: 8696365
[25] TANAKA R, TANAKA A. Tetrapyrrole biosynthesis in higher plants. Annual Review of Plant Biology, 2007,58(1):321-346.
doi: 10.1146/annurev.arplant.57.032905.105448
[26] PAPENBROCK J, GRIMM B. Regulatory network of tetrapyrrole biosynthesis--studies of intracellular signaling involved in metabolic and developmental control of plastids. Planta, 2001,213(5):667-681.
doi: 10.1007/s004250100593 pmid: 11678270
[27] OSTER U, TANAKA R, TANAKA A, RUDIGER W. Cloning and functional expression of the gene encoding the key enzyme for chlorophyll b biosynthesis (CAO) from Arabidopsis thaliana. The Plant Journal, 2000,21(3):305-310.
doi: 10.1046/j.1365-313x.2000.00672.x pmid: 10758481
[28] LEE S, KIM J H, YOO E S, LEE C H, HIROCHIKA H, AN G. Differential regulation of chlorophyll a oxygenase genes in rice. Plant Molecular Biology, 2005,57(6):805-818.
doi: 10.1007/s11103-005-2066-9
[29] ESPINEDA C E, LINFORD A S, DEVINE D, BRUSSLAN J A. The AtCAO gene, encoding chlorophyll a oxygenase, is required for chlorophyll b synthesis in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America, 1999,96(18):10507-10511.
doi: 10.1073/pnas.96.18.10507 pmid: 10468639
[30] 邓昌哲, 姚慧, 安飞飞, 李开绵, 陈松笔. 木薯块根有色体分离及其蛋白质组学的研究. 作物学报, 2017,43(9):1290-1299.
doi: 10.3724/SP.J.1006.2017.01290
DENG C Z, YAO H, AN F F, LI K M, CHENG S B. Chromoplast isolation and its proteomic analysis from Cassava storage roots. Acta Agronomica Sinica, 2017,43(9):1290-1299. (in Chinese)
doi: 10.3724/SP.J.1006.2017.01290
[31] ZHANG B, LIU J, CHENG L, ZHANG Y Y, HOU S Y, SUN Z X, LI H Y, HAN Y H. Carotenoid composition and expression of biosynthetic genes in yellow and white foxtail millet [Ssetaria italica (L.) beauv]. Journal of Cereal Science, 2019,85:84-90.
doi: 10.1016/j.jcs.2018.11.005
[32] 王玲玲. 关于谷物胚乳淀粉体的发生和蛋白体形成的研究[D]. 扬州: 扬州大学, 2013.
WANG L L. Study on occurrence of amyloplasts and the formation of protein body in cereal endosperm[D]. Yangzhou: Yangzhou University, 2013. (in Chinese)
[33] 王敏. 关于水稻颖果发育的研究[D]. 扬州: 扬州大学, 2011.
WANG M. Caryopsis development of rice[D]. Yangzhou: Yangzhou University, 2011. (in Chinese)
[34] CHANG L, ZHANG B, HE L, MA F F, WANG X C, LI H Y, HAN Y H. Constitutive down-regulation of SiSGR gene is related to green millet in Setaria italica. Russian Journal of Plant Physiology, 2017,64(4):608-615.
doi: 10.1134/S1021443717040045
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