Scientia Agricultura Sinica ›› 2020, Vol. 53 ›› Issue (5): 874-889.doi: 10.3864/j.issn.0578-1752.2020.05.002
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
ZHANG Wen,MENG ShuJun,WANG QiYue,WAN Jiong,MA ShuanHong,LIN Yuan,DING Dong(),TANG JiHua(
)
[1] | 刘红梅, 周新跃, 刘建丰, 邱颖波, 范峰峰, 徐庆国 . 籼型杂交稻光合特性的配合力分析. 植物遗传资源学报, 2014,15(4):699-705. |
LIU H M, ZHOU X Y, LIU J F, QIU Y B, FAN F F, XU Q G . Analysis of combining ability of photosynthetic characteristics in Indica hybrid rice. Journal of Plant Genetic Resources, 2014,15(4):699-705. (in Chinese) | |
[2] | 李合生 . 现代植物生理学. 北京: 高等教育出版社, 2012. |
LI H S . Modern Plant Physiology. Beijing: Higher Education Press, 2012. ( in Chinese) | |
[3] | LEISTER D . Chloroplast research in the genomic age. Trends in Genetics, 2003,19(1):47-56. |
[4] | SUGIMOTO H, KUSUMI K, TOZAWA Y, YAZAKI J, KISHIMOTO N, KIKUCHI S, IBA K . The virescent-2 mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation. Plant and Cell Physiology, 2004,45(8):985-996. |
[5] | ABDALLAH F, SALAMINI F, LEISTER D . A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis. Trends in Plant Science, 2000,5(4):141-142. |
[6] | PELTIER J B, CAI Y, SUN Q, ZABROUSKOV V, GIACOMELLI L, RUDELLA A, YTTERBERG A J, RUTSCHOW H, VAN WIJK K J . The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Molecular & Cellular Proteomics, 2006,5(1):114-133. |
[7] | BÖRNER T, ALEYNIKOVA A Y, ZUBO Y O, KUSNETSOV V V . Chloroplast RNA polymerases: Role in chloroplast biogenesis. Biochimica et Biophysica Acta, 2015,1847(9):761-769. |
[8] | SHIINA T, TSUNOYAMA Y, NAKAHIRA Y, KHAN M S . Plastid RNA polymerases, promoters, and transcription regulators in higher plants. International Review of Cytology-a Survey of Cell Biology, 2005,244:1-68. |
[9] | 叶琳珊 . pTAC7调控拟南芥叶绿基因表达的机理研究[D]. 上海: 上海师范大学, 2015. |
YE L S . Mechanism of pTAC7 regulation of Arabidopsis leaf green gene expression[D]. Shanghai: Shanghai Normal University, 2015. ( in Chinese) | |
[10] | 王振国, 魏家绵, 沈允钢 . 玉米叶绿体atpB及atpE基因在大肠杆菌中的表达. 植物生理学报, 1995(3):265-396. |
WANG Z G, WEI J M, SHEN Y G . Over-expression of maize chloroplastsatpB and atpE genes in Escherichia coli. Journal of Plant Physiology, 1995(3):265-396. (in Chinese) | |
[11] | PUTHIYAVEETIL S, IBRAHIM I M, JELICIĆ B, TOMASIĆ A, FULGOSI H, ALLEN J F . Transcriptional control of photosynthesis genes: The evolutionarily conserved regulatory mechanism in plastid genome function. Genome Biology and Evolution Biology and Evolution, 2010,2:888-896. |
[12] | ZHELYAZKOVA P, SHARMA C M, FÖRSTNER K U, LIERE K, VOGEL J, BÖRNER T . The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. The Plant Cell, 2012,24:123-136. |
[13] | LGLOI G L, KÖSSEL H . The transcriptional apparatus of chloroplasts. Critical Reviews in Plant Sciences, 1992,10(6):525-558. |
[14] | KRAUSE K, MAIER R M, KOFER W, KRUPINSKA K, HERRMANN R G . Disruption of plastid-encoded RNA polymerase genes in tobacco: expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome. Molecular and General Genetics, 2000,263:1022-1030. |
[15] | PFALZ J, LIERE K, KANDLBINDER A, DIETZ K J, OELMULLER R . pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. The Plant Cell, 2006,18(1):176-197. |
[16] | CHEN M, GALVAO R M, LI M, BURGER B, BUGEA J, BOLADO J, CHORY J . Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell, 2010,141:1230-1240. |
[17] | MYOUGA F, HOSODA C, UMEZAWA T, IIZUMI H, KUROMORI T, MOTOHASHI R, SHONO Y, NAGATA N, IKEUCHI M, SHINOZAKI K . A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis. The Plant Cell, 2008,20:3148-3162. |
[18] | KROLL D, MEIERHOFF K, BECHTOLD N, KINOSHITA M, WESTPHAL S, VOTHKNECHT U C, SOLL J, WESTHOFF P . VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation. Proceedings of the National Academy of Sciences of the United States of America, 2001,98:4238-4242. |
[19] | MARÉCHAL A, PARENT J S, VÉRONNEAU-LAFORTUNE F, JOYEUX A, LANG B F, BRISSON N . Whirly proteins maintain plastid genome stability in Arabidopsis. Proceedings of the National Academy of Sciences of the USA, 2009,106(34):14693-14698. |
[20] | GAO Z P, YU Q B, ZHAO T T, MA Q, CHEN G X, YANG Z N . A functional component of the transcriptionally active chromosome complex, Arabidopsis pTAC14, interacts with pTAC12/HEMERA and regulates plastid gene expression. Plant Physiology, 2011,157(4):1733-1745. |
[21] | YAGI Y, ISHIZAKI Y, NAKAHIRA Y, TOZAWA Y, SHIINA T . Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase. Proceedings of the National Academy of Sciences of the USA, 2012,109(19):7541-7546. |
[22] | YU Q B, LU Y, ZHAO T T, HUANG C, ZHAO H F, ZHANG X L. LV R H, YANG Z N . TAC7, an essential component of the plastid transcriptionally active chromosome complex, interacts with FLN1, TAC10, TAC12 and TAC14 to regulate chloroplast gene expression in Arabidopsis thaliana. Physiologia Plantarum, 2013,148(3):408-421. |
[23] | 张森 . 果糖激酶类似蛋白1,2与硫氧还蛋白Z互作调控水稻叶绿体发育[D]. 北京: 中国农业科学院, 2018. |
ZHANG S . Fructose kinase-like protein 1,2 interacts with thioredoxin Z to regulate rice chloroplast development[D]. Beijing: Chinese Academy of Agricultural Sciences, 2018. ( in Chinese) | |
[24] | KUSABA M, ITO H, MORIT R, IIDA S, SATO Y, FUJIMOTO M, KAWASAKI S, TANAKA R, HIROCHIKA H, NISHIMURA M . Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence. The Plant Cell, 2007,19(4):1362-1375. |
[25] | TANG Y Y, LI M, CHEN Y P, WU P Z, WU G J, JIANG H W . Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice. Journal of Plant Physiology, 2011,168(16):1952-1959. |
[26] | HAYASHI-TSUGANE M, TAKAHARA H, AHMED N, HIMI E, TAKAGI K, IIDA S, TSUGANE K, MAEKAWA M . A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene. Plant & Cell Physiology, 2014,55(1):3-15. |
[27] | ZHAO D S, ZHANG C Q, LI Q F, YANG Q Q, GU M H, LIU Q Q . A residue substitution in the plastid ribosomal protein L12/AL1 produces defective plastid ribosome and causes early seedling lethality in rice. Plant Molecular Biology, 2016,91(1/2):161-177. |
[28] | WANG D, LIU H G, ZHAI G W, WANG L S, SHAO J F, TAO Y Z . Osptac2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development. Journal of Genetics & Genomics, 2016,43(10):601-608. |
[29] | 胡根海, 喻树迅 . 利用改良的CTAB法提取棉花叶片总RNA. 棉花学报, 2007(1):69-70. |
HU G H, YU S X . Extraction of total RNA from cotton leaves by improved CTAB method. Cotton Science, 2007(1):69-70. (in Chinese) | |
[30] | 刘仁林, 虞功清, 邹伟民, 杜天真 . 植物透射电镜样品制备技术的改进. 江西林业科技, 2008(1):43-45. |
LIU R L, YU G Q, ZOU W M, DU T Z . Improvements in technique of madding ultrathin section for transmission electron microscope. Jiangxi Forestry Science and Technology, 2008(1):43-45. (in Chinese) | |
[31] | KWON K, CHO M . Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality. The Plant Journal, 2008,55(3):428-442 |
[32] | ANDREWS S . FastQC: A quality control tool for high throughput sequence data. 2013. |
[33] | BOLGER A M, LOHSE M, USADEL B . Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 2014,30(15):2114-2120. |
[34] | KIM D, LANGMEAD B, SALZBERG S L . HISAT: A fast spliced aligner with low memory requirements. Nature Methods, 2015,12(4):357-360. |
[35] | LIAO Y, SMYTH G K, SHI W . Feature Counts: An efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics (Oxford, England), 2014,30(7):923-930. |
[36] | YU G, WANG L G, HAN Y, HE Q Y . Cluster Profiler: An R package for comparing biological themes among gene clusters. A Journal of Integrative Biology, 2012,16(5):284-287. |
[37] | LIVAK K J, SCHMITTGEN T D . Analysis of relative gene expression data using real-time quantitative PCR and the 2 -ΔΔCT method . Methods, 2001,25(4):402-408. |
[38] | YE R, YAO Q H, XU Z H, WEI X H . Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Plant Journal, 2004,38(2):348-357. |
[39] | MEINKE D, MURALLA R, SWEENEY C, DICKERMAN A . Identifying essential genes in Arabidopsis thaliana. Trends in Plant Science, 2008,13(9):483-491. |
[40] | WATERS M T, LANGDALE J A . The making of a chloroplast. The EMBO Journal, 2014,28(19):2861-2873. |
[41] | 吴久利 . 两种氨基酸和三种遗传病. 生物学教学, 2005,30(10):72. |
WU J L . Two kinds of amino acids and three genetic diseases. Biology Teaching, 2005,30(10):72. (in Chinese) | |
[42] | NAKAMURA H, MURAMATSU M, HAKATA M, UENO O, NAGAMURA Y, HIROCHIKA H, TAKANO M, ICHIKAWA H . Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells. Plant and Cell Physiology, 2009,50(11):1933-1949. |
[43] | SCHARFENBERG M, MITTERMAYR L, VON ROEPENACK- LAHAYE E, SCHLICKE H, GRIMM B, LEISTER D, KLEINE T. Functional characterization of the two ferrochelatasein Arabidopsis thaliana. Plant Cell and Environment, 2013,38(2):280-298. |
[44] | SAHA A, DAS S, MOIN M, DUTTA M, BAKSHI A, MADHAV M S, KIRTI P B . Genome-wide identification and comprehensive expression profiling of ribosomal protein small subunit (RPS) genes and their comparative analysis with the large subunit (RPL) genes in rice. Frontiers in Plant Science, 2017,8:1553-1574. |
[45] | 张丽君 . 蕨类植物叶绿体rps4基因和PHY基因GAF结构域的适应性进化研究[D]. 北京:中国科学院大学, 2010. |
ZHANG L J . Adaptive evolution of chlorophyll rps4 gene and PHY gene GAF domain in ferns[D]. Beijing: University of Chinese Academy of Sciences, 2010. ( in Chinese) | |
[46] | OELMÜLLER R, HERRMANN R G, PAKRASI H B . Molecular studies of CtpA, the carboxyl-terminal processing protease for the D1 protein of the photosystem II reaction center in higher plants. Journal of Biological Chemistry, 1996,271(36):21848-21852. |
[47] | 郑唐春 . 小黑杨PsnCYCD1;1基因参与细胞分裂及次生生长作用机理研究[D]. 哈尔滨:东北林业大学, 2016. |
ZHENG T C . Mechanism of PsnCYCD1;1 gene involved in cell division and secondary growth[D]. Harbin: Northeast Forestry University, 2016. ( in Chinese) | |
[48] | 梁彬, 邹向阳 . 细胞周期蛋白依赖性激酶及抑制因子与肿瘤. 中国实验诊断学, 2006,10(11):1378-1380. |
LIANG B, ZOU X Y . Cyclin-dependent kinases and inhibitors and tumors. Chinese Journal of Laboratory Diagnosis, 2006,10(11):1378-1380. (in Chinese) | |
[49] | 赵春玲, 宋咏梅, 樊飞跃, 詹启敏 . 细胞周期蛋白cyclin b1与肿瘤. 肿瘤, 2007,27(4):322-326. |
ZHAO C L, SONG Y M, FAN F Y, ZHAN Q M . Cyclin cyclin b1 and tumor. Tumor, 2007,27(4):322-326. | |
[50] | VANNESTE S, COPPENS F, LEE E, DONNER T J, XIE Z, VAN ISTERDAEL G, DHONDT S, DE WINTER F, DE RYBEL B, VUYLSTEKE M, DE VEYLDER L, FRIML J, INZÉ D, GROTEWOLD E, SCARPELLA E, SACK F, BEEMSTER G T, BEECKMAN T . Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis. The EMBO Journal, 2011,30(16):3430-3441. |
[51] | RUDELLA A, FRISO G, ALONSO M, ECKER J, WIJK K . Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. The Plant Cell, 2006,18(7):1704-1721. |
[52] | NISHIMURA K, ASAKURA Y, FRISO G, KIM J, OH S H, RUTSCHOW H, PONNALA L, VAN WIJK K J . ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. The Plant Cell, 2013,25(6):2276-2301. |
[53] | SJOGREN L L, MACDONALD T M, SUTINEN S, CLARKE A K . Inactivation of the clpC1 gene encoding a chloroplast Hsp100 molecular chaperone causes growth retardation, leaf chlorosis, lower photosynthetic activity, and a specific reduction in photosystem content. Plant Physiology, 2004,136:4114-4126. |
[1] | QIU YiLei,WU Fan,ZHANG Li,LI HongLiang. Effects of Sublethal Doses of Imidacloprid on the Expression of Neurometabolic Genes in Apis cerana cerana [J]. Scientia Agricultura Sinica, 2022, 55(8): 1685-1694. |
[2] | ZHAO Ling, ZHANG Yong, WEI XiaoDong, LIANG WenHua, ZHAO ChunFang, ZHOU LiHui, YAO Shu, WANG CaiLin, ZHANG YaDong. Mapping of QTLs for Chlorophyll Content in Flag Leaves of Rice on High-Density Bin Map [J]. Scientia Agricultura Sinica, 2022, 55(5): 825-836. |
[3] | ZHANG XiaoPing,SA ShiJuan,WU HanYu,QIAO LiYuan,ZHENG Rui,YAO XinLing. Leaf Stomatal Close and Opening Orchestrate Rhythmically with Cell Wall Pectin Biosynthesis and Degradation [J]. Scientia Agricultura Sinica, 2022, 55(17): 3278-3288. |
[4] | CHANG LiGuo,HE KunHui,LIU JianChao. Mining of Genetic Locus of Maize Stay-Green Related Traits Under Multi-Environments [J]. Scientia Agricultura Sinica, 2022, 55(16): 3071-3081. |
[5] | XU XianBin,GENG XiaoYue,LI Hui,SUN LiJuan,ZHENG Huan,TAO JianMin. Transcriptome Analysis of Genes Involved in ABA-Induced Anthocyanin Accumulation in Grape [J]. Scientia Agricultura Sinica, 2022, 55(1): 134-151. |
[6] | YinHua MA,KaiQin MO,Lu LIU,PingFang LI,ChenZhong JIN,Fang YANG. Effect of Overexpression of OsRRK1 Gene on Rice Leaf Development [J]. Scientia Agricultura Sinica, 2021, 54(5): 877-886. |
[7] | ZHU FangFang,DONG YaHui,REN ZhenZhen,WANG ZhiYong,SU HuiHui,KU LiXia,CHEN YanHui. Over-expression of ZmIBH1-1 to Improve Drought Resistance in Maize Seedlings [J]. Scientia Agricultura Sinica, 2021, 54(21): 4500-4513. |
[8] | LIU Kai,HE ShanShan,ZHANG CaiXia,ZHANG LiYi,BIAN ShuXun,YUAN GaoPeng,LI WuXing,KANG LiQun,CONG PeiHua,HAN XiaoLei. Identification and Analysis of Differentially Expressed Genes in Adventitious Shoot Regeneration in Leaves of Apple [J]. Scientia Agricultura Sinica, 2021, 54(16): 3488-3501. |
[9] | ZhiJun XU,Sheng ZHAO,Lei XU,XiaoWen HU,DongSheng AN,Yang LIU. Discovery of Microsatellite Markers from RNA-seq Data in Cultivated Peanut (Arachis hypogaea) [J]. Scientia Agricultura Sinica, 2020, 53(4): 695-706. |
[10] | ZHOU Lian,XIONG YuHan,HONG XiangDe,ZHOU Jing,LIU ChaoXian,WANG JiuGuang,WANG GuoQiang,CAI YiLin. Functional Characterization of a Maize Plasma Membrane Intrinsic Protein ZmPIP2;6 Responses to Osmotic, Salt and Drought Stress [J]. Scientia Agricultura Sinica, 2020, 53(3): 461-473. |
[11] | ZHANG ChunXiao,LI ShuFang,LIU XuYang,LIU Jie,LIU WenPing,LIU XueYan,LI ChunHui,WANG TianYu,LI XiaoHui. Establishment of Evaluation System for Drought Tolerance at Maize Germination Stage Under Soil Stress [J]. Scientia Agricultura Sinica, 2020, 53(19): 3867-3877. |
[12] | GAO Yan,ZHU YaNan,LI QiuFang,SU SongKun,NIE HongYi. Transcriptomic Analysis of Genes Related to Nursing Behavior in the Brains of Apis mellifera ligustica [J]. Scientia Agricultura Sinica, 2020, 53(19): 4092-4102. |
[13] | HAO ShuLin,CHEN HongWei,LIAO FangLi,LI Li,LIU ChangYan,LIU LiangJun,WAN ZhengHuang,SHA AiHua. Analysis of F-Box Gene Family Based on Salt-Stressed Transcriptome Sequencing in Vicia faba L. [J]. Scientia Agricultura Sinica, 2020, 53(17): 3443-3454. |
[14] | XiaoDong LI,YiShun SHANG,ShiGe LI,GuangJi CHEN,ChengJiang PEI,Fang SUN,XianQin XIONG. The Mechanism of Ectopic Expression of Brassica juncea Multidrug and Toxic Compound Extrusion (BjMATE) to Enhance the Resistance to Acid and Aluminum Stress in Alfalfa [J]. Scientia Agricultura Sinica, 2020, 53(1): 18-28. |
[15] | ShuLei GUO,XiaoMin LU,JianShuang QI,LiangMing WEI,Xin ZHANG,XiaoHua HAN,RunQing YUE,ZhenHua WANG,ShuangGui TIE,YanHui CHEN. Explore Regulatory Genes Related to Maize Leaf Morphogenesis Using RNA-Seq [J]. Scientia Agricultura Sinica, 2020, 53(1): 1-17. |
|