Scientia Agricultura Sinica ›› 2017, Vol. 50 ›› Issue (7): 1242-1251.doi: 10.3864/j.issn.0578-1752.2017.07.007

• PLANT PROTECTION • Previous Articles     Next Articles

Cloning, Expression and Anti-Virus Function Analysis of Tomato Resistance-Related Gene SlHin1

PENG HaoRan, PAN Qi, WEI ZhouLing, PU YunDan, ZHANG YongZhi, WU GenTu, QING Ling, SUN XianChao   

  1. College of Plant Protection, Southwest University, Chongqing 400716
  • Received:2016-10-27 Online:2017-04-01 Published:2017-04-01

Abstract: 【Objective】The objective of this study is to clone tomato resistance-related gene SlHin1, to analyze its bioinformatics characters, tissue expression and subcellular localization, evaluate its anti-role in the process of the infection and movement of Tobacco mosaic virus (TMV), and to provide a theoretical basis for tomato resistance breeding. 【Method】 Gene cloning and RT-PCR were combined to isolate a gene which might encode SlHIN1. Bioinformatics tools were applied to analyze both the DNA sequence and the characteristics of encoded protein sequence, MEGA6.0 was used to make multiple sequence alignments between the SlHIN1 amino acid sequences and their homologous sequences, and the phylogenetic tree of homologous species was constructed. The subcellular localization test of SlHIN1 was analyzed by using fusion expression vector pCV-mGFP-C1, then the gene was inserted into the expression vector by Sal I and Bam H I digestion. The real-time fluorescent quantitative RT-PCR (qRT-PCR) was used to analyze to the expression levels of SlHin1 in different tomato tissues. The gene fragment was inserted into the plant expression vector pFGC5941 by Nco I and Bam HI digestion. The SlHIN1 was transiently expressed in the N. benthamiana leaves by agro-infiltration, and the SlHIN1 expressed leaves were inoculated with TMV-GFP. The accumulation of the virions was detected by indirect ELISA to investigate the antiviral function of the gene. Western blot was used to evaluate the expression of SlHIN1 protein.【Result】Using RT-PCR method, the tomato Hin1 was obtained from tomato (Solanum lycopersicon cv. Ailsa Craig) leaves and was designated as SlHin1 (GenBank number: KU195820). SlHin1 was 675 bp in length. It was predicted to encode a protein with 225 amino acid residues, a molecular weight of 26.1 kD and a theoretical isoelectric point of 9.35. SlHin1 contains the LEA-14 domains structure, doesn’t have transmembrane segments and locates on chromosome 10 (Solyc10g081980). Sequence analysis and phylogenetic tree analysis showed that SlHIN1 shared approximately 80% similarity with HIN1 from other solanaceae plants and was close to that of rice and sorghum monocotyledons. Subcellular localization was showed that SlHIN1 distributed on the plasma membrane of the leaf epidermis cell of N. benthamiana, which is consistent with the predicted results. The results of qRT-PCR showed that the SlHin1 was of tissue-specificity, whose expression decreased from tomato roots, leaves to stems. The SlHIN1 was transiently expressed in the N. benthamiana leaves by agro-infiltration, and the SlHIN1 expressed leaves were inoculated with TMV-GFP. After 4 days, there was no green fluorescence observed in the SlHIN1 expressed leaves under UV light, but the green fluorescence could be observed in the control group. With the passage of the inoculation, the sporadic fluorescence on the leaves of the treated group was slightly enlarged after 7 days post inoculation, and the green fluorescence of the control group had spread to the leaf. The spread of virus was inhibited and the time that the virus needed to reach the lobus cardiacus was longer, the content of the virions was less than that of control group through indirect ELISA test result. Western blot analysis showed that there was a specific band at about 26 kD in the nitrocellulose membrane, and no corresponding control was observed in the empty vector, indicating that the SlHIN1 protein was successfully expressed at the injection site.【Conclusion】Hin1 genes are present in all tested species, and the SlHIN1 is localized on the plasma membrane of the leaf epidermis cell of N. benthamiana. Transiently expressing SlHIN1 could inhibit the accumulation of the virions and spread of the virus, which can reflect that it may be involved in the resistance reaction of Solanaceae plants to TMV causing them to have resistance.

Key words: tomato, SlHin1, Tobacco mosaic virus (TMV), expression, anti-virus

[1]    Gopalan S, Wei W, He S Y. hrp gene-dependent induction of hin1: a plant gene activated rapidly by both harpins and the avrPto gene-mediated signal. The Plant Journal, 1996, 10(4): 591-600.
[2]    Takahashi Y, Berberich T, Yamashita K, Uehara Y, Miyazaki A, Kusano T. Identification of tobacco HIN1 and two closely related genes as spermine-responsive genes and their differential expression during the Tobacco mosaic virus-induced hypersensitive response and during leaf- and flower-senescence. Plant Molecular Biology, 2004, 54: 613-622.
[3]    Century K S, Shapiro A D, Repetti P P, Dahlbeck D, Holub E, Staskawicz B J. NDR1, a pathogen-induced component required for Arabidopsis disease resistance. Science, 1997, 278: 1963-1965.
[4]    Gijsegem F V, Gough C, Zischek C, Niqueux E, Arlat M, Genin S. The hrp gene locus of Pseudomonas solanacearum, which controls the production of a type III secretion system, encodes eight proteins related to components of the bacterial flagellar biogenesis complex. Molecular Microbiology, 1995, 15(6): 1095-1114.
[5]    Salmeron J M, Staskawicz B J. Molecular characterization and hrp dependence of the avirulence gene avrPto from Pseudomonas syringae pv. tomato. Molecular & General Genetics, 1993, 239: 6-16.
[6]    Pontier D, Gan S, Amasino R M, Roby D, Lam E. Markers for hypersensitive response and senescence show distinct patterns of expression. Plant Molecular Biology, 1999, 39: 1243-1255.
[7]    Rakwal R, Agrawal G K, Tamogami S, Iwahashi H. Transcriptional profiling of OsHin1 in rice plants: a potential role in defense/stress and development. Plant Science, 2004, 166: 997-1005.
[8]    Chong J, Henanff G L, Bertsch C, Walter B. Identification, expression analysis and characterization of defense and signaling genes in Vitis vinifera. Plant Physiology & Biochemistry, 2008, 46: 469-481.
[9]    Zheng M S, Takahashi H, Miyazaki A, Yamaguchi K, Kusano T. Identification of the cis -acting elements in Arabidopsis thaliana NHL10 promoter responsible for leaf senescence, the hypersensitive response against Cucumber mosaic virus infection, and spermine treatment. Plant Science, 2005, 168: 415-422.
[10]   Lee J, Klessig D F, Nürnberger T. A harpin binding site in tobacco plasma membranes mediates activation of the pathogenesis- related gene HIN1 independent of extracellular calcium but dependent on mitogen-activated protein kinase activity. The Plant Cell, 2001, 13(5): 1079-1093.
[11]   Varet A, Parker J, Tornero P, Nass N, Nürnberger T, Dangl J L. NHL25 and NHL3, two NDR1/HIN1-like genes in Arabidopsis thaliana with potential role (s) in plant defense. Molecular plant-microbe interactions, 2002, 15(6): 608-616.
[12]   Liu Y, Schiff M, Marathe R, Dinesh‐Kumar S. Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N‐mediated resistance to tobacco mosaic virus. The Plant Journal, 2002, 30(4): 415-429.
[13]   Lu Y w, Yan F, Guo W, Zheng H y, Lin L, Peng J j, adams m j, chen j p. Garlic virus X 11‐kDa protein granules move within the cytoplasm and traffic a host protein normally found in the nucleolus. Molecular plant pathology, 2011, 12(7): 666-676.
[14]   Xin Z, Wang A, Yang G, Gao P, Zheng Z L. The Arabidopsis A4 subfamily of lectin receptor kinases negatively regulates abscisic acid response in seed germination. Plant physiology, 2009, 149: 434-444.
[15]   Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical biochemistry, 1987, 162: 156-159.
[16] Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular biology and evolution, 2011, 28(10): 2731-2739.
[17]   Krogh A, Larsson B, Von Heijne G, Sonnhammer E L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Journal of molecular biology, 2001, 305: 567-580.
[18]   Benkert P, Biasini M, Schwede T. Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 2011, 27(3): 343-350.
[19]   邱礽, 陶刚, 李奇科, 邱又彬, 刘作易. 农杆菌渗入法介导的基因瞬时表达技术及应用. 分子植物育种, 2009, 7(5): 1032-1039.
Qiu R, Tao G, Li Q K, Qiu Y B, Liu Z Y. Transient gene expression mediated by agroinfiltration and its application. Molecular Plant Breeding, 2009, 7(5): 1032-1039. (in Chinese)
[20]   Voinnet O, Pinto Y M, Baulcombe D C. Suppression of gene silencing: a general strategy used by diverse DNA and RNA viruses of plants. Proceedings of the National Academy of Sciences of the United States of America, 1999, 96(24): 14147-14152.
[21]   Livak K J, Schmittgen T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2 −ΔΔCT method. Methods, 2001, 25: 402-408.
[22]   Lee S B, Ham B K, Park J M, Kim Y J, Paek K H. BnNHL18A shows a localization change by stress-inducing chemical treatments. Biochemical and Biophysical Research Communications, 2006, 339: 399-406.
[23]   邓麟, 王晓杰, 刘新颖, 蔡高磊, 汤春蕾, 魏国荣, 黄丽丽, 康振 生. 条锈菌诱导的小麦TaHin1的克隆与表达特征分析. 中国农业科学, 2010, 43(10): 1977-1984.
Deng L, Wang X J, Liu X Y, Cai G L, Tang C L, Wei G R, Huang L L, Kang Z S. Isolation and expression analysis of a TaHin1 gene induced by stripe rust fungus in wheat. Scientia Agricultura Sinica, 2010, 43(10): 1977-1984. (in Chinese)
[24]   李岩, 王枫, 谭国飞, 贾晓玲, 蒋倩, 熊爱生. 芹菜NHL-like蛋白基因克隆与表达分析. 植物遗传资源学报, 2014, 15(4): 788-794.
Li Y, Wang F, Tan G F, Jia X L, Jiang Q, Xiong A S. Cloning and expression pattern analysis of NHL?like protein gene in celery. Journal of Plant Genetic Resources, 2014, 15(4): 788-794. (in Chinese)
[25]   Goyal K, Walton L J, Tunnacliffe A. LEA proteins prevent protein aggregation due to water stress. Biochemical Journal, 2005, 388: 151-157.
[26]   Coppinger P, Repetti P P, Day B D, Mehlert A, Staskawicz B J. Overexpression of the plasma membrane- localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana. The Plant Journal, 2004, 40(2): 225-237.
[27]   Varet A, Hause B, Hause G, Scheel D, Lee J. The Arabidopsis NHL3 gene encodes a plasma membrane protein and its overexpression correlates with increased resistance to Pseudomonas syringae pv. tomato DC3000. Plant Physiology, 2003, 132: 2023-2033.
[28]   Knepper C, Savory E A, Day B. The role of NDR1 in pathogen perception and plant defense signaling. Plant Signaling & Behavior, 2011, 6(8): 1114-1116.
[29]   Dörmann P, Gopalan S, Sheng Y H, Benning C. A gene family in Arabidopsis thaliana with sequence similarity to NDR1 and HIN1. Plant Physiology & Biochemistry, 2000, 38: 789-796.
[30]   Zhao N, Sun B C, Zhao X L, Wang Y, Sun H Z, Dong X Y, Meng J, Gu Q. Changes in microRNAs associated with Twist-1 and Bcl-2 overexpression identify signaling pathways. Experimental and Molecular Pathology, 2015, 99: 524-532.
[31]   Schaeffer S M, Nakta P A. CRISPR/Cas9-mediated genome editing and gene replacement in plants: Transitioning from lab to field. Plant Science, 2015, 240: 130-142.
[32]   Belhaj K, Chaparro-Garcia A, Kamoun S, Patron N J, Nekrasov V. Editing plant genomes with CRISPR/Cas9. Current Opinion in Biotechnology, 2015, 32: 76-84.
[1] SHEN LongXian, WANG LiTing, HE Ke, DU Xue, YAN FeiFei, CHEN WeiHu, LÜ YaoPing, WANG Han, ZHOU XiaoLong, ZHAO AYong. Effects of Melatonin and Nicotinamide Mononucleotides on Proliferation of Skeletal Muscle Satellite Cells in Goose [J]. Scientia Agricultura Sinica, 2023, 56(2): 391-404.
[2] GU LiDan,LIU Yang,LI FangXiang,CHENG WeiNing. Cloning of Small Heat Shock Protein Gene Hsp21.9 in Sitodiplosis mosellana and Its Expression Characteristics During Diapause and Under Temperature Stresses [J]. Scientia Agricultura Sinica, 2023, 56(1): 79-89.
[3] ZHANG KeKun,CHEN KeQin,LI WanPing,QIAO HaoRong,ZHANG JunXia,LIU FengZhi,FANG YuLin,WANG HaiBo. Effects of Irrigation Amount on Berry Development and Aroma Components Accumulation of Shine Muscat Grape in Root-Restricted Cultivation [J]. Scientia Agricultura Sinica, 2023, 56(1): 129-143.
[4] MO WenJing,ZHU JiaWei,HE XinHua,YU HaiXia,JIANG HaiLing,QIN LiuFei,ZHANG YiLi,LI YuZe,LUO Cong. Functional Analysis of MiZAT10A and MiZAT10B Genes in Mango [J]. Scientia Agricultura Sinica, 2023, 56(1): 193-202.
[5] SHAO ShuJun,HU ZhangJian,SHI Kai. The Role and Mechanism of Linoleyl Ethanolamide in Plant Resistance Against Botrytis cinerea in Tomato [J]. Scientia Agricultura Sinica, 2022, 55(9): 1781-1789.
[6] LI ShiJia,LÜ ZiJing,ZHAO Jin. Identification of R2R3-MYB Subfamily in Chinese Jujube and Their Expression Pattern During the Fruit Development [J]. Scientia Agricultura Sinica, 2022, 55(6): 1199-1212.
[7] WANG MengRui, LIU ShuMei, HOU LiXia, WANG ShiHui, LÜ HongJun, SU XiaoMei. Development of Artificial Inoculation Methodology for Evaluation of Resistance to Fusarium Crown and Root Rot and Screening of Resistance Sources in Tomato [J]. Scientia Agricultura Sinica, 2022, 55(4): 707-718.
[8] LAI ChunWang, ZHOU XiaoJuan, CHEN Yan, LIU MengYu, XUE XiaoDong, XIAO XueChen, LIN WenZhong, LAI ZhongXiong, LIN YuLing. Identification of Ethylene Synthesis Pathway Genes in Longan and Its Response to ACC Treatment [J]. Scientia Agricultura Sinica, 2022, 55(3): 558-574.
[9] SHU JingTing,SHAN YanJu,JI GaiGe,ZHANG Ming,TU YunJie,LIU YiFan,JU XiaoJun,SHENG ZhongWei,TANG YanFei,LI Hua,ZOU JianMin. Relationship Between Expression Levels of Guangxi Partridge Chicken m6A Methyltransferase Genes, Myofiber Types and Myogenic Differentiation [J]. Scientia Agricultura Sinica, 2022, 55(3): 589-601.
[10] ZHAO HuiTing,PENG Zhu,JIANG YuSuo,ZHAO ShuGuo,HUANG Li,DU YaLi,GUO LiNa. Expression and Binding Properties of Odorant Binding Protein AcerOBP7 in Apis cerana cerana [J]. Scientia Agricultura Sinica, 2022, 55(3): 613-624.
[11] LI YuZe,ZHU JiaWei,LIN Wei,LAN MoYing,XIA LiMing,ZHANG YiLi,LUO Cong,HUANG Gui Xiang,HE XinHua. Cloning and Interaction Protein Screening of RHF2A Gene from Xiangshui Lemon [J]. Scientia Agricultura Sinica, 2022, 55(24): 4912-4926.
[12] HU XueHua,LIU NingNing,TAO HuiMin,PENG KeJia,XIA Xiaojian,HU WenHai. Effects of Chilling on Chlorophyll Fluorescence Imaging Characteristics of Leaves with Different Leaf Ages in Tomato Seedlings [J]. Scientia Agricultura Sinica, 2022, 55(24): 4969-4980.
[13] GUO ShaoLei,XU JianLan,WANG XiaoJun,SU ZiWen,ZHANG BinBin,MA RuiJuan,YU MingLiang. Genome-Wide Identification and Expression Analysis of XTH Gene Family in Peach Fruit During Storage [J]. Scientia Agricultura Sinica, 2022, 55(23): 4702-4716.
[14] ZHANG Qi,DUAN Yu,SU Yue,JIANG QiQi,WANG ChunQing,BIN Yu,SONG Zhen. Construction and Application of Expression Vector Based on Citrus Leaf Blotch Virus [J]. Scientia Agricultura Sinica, 2022, 55(22): 4398-4407.
[15] LIU Hao,PANG Jie,LI HuanHuan,QIANG XiaoMan,ZHANG YingYing,SONG JiaWen. Effects of Foliar-Spraying Selenium Coupled with Soil Moisture on the Yield and Quality of Tomato [J]. Scientia Agricultura Sinica, 2022, 55(22): 4433-4444.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!