Scientia Agricultura Sinica ›› 2015, Vol. 48 ›› Issue (13): 2538-2548.doi: 10.3864/j.issn.0578-1752.2015.13.006
• PLANT PROTECTION • Previous Articles Next Articles
WANG Ling1,2, ZUO Shi-min1, ZHANG Ya-fang1, CHEN Zong-xiang1, HUANG Shi-wen2, PAN Xue-biao1
[1] Zhang A P, Lin R M, Zhang D H, Qiu P G, Xu L Z, Ai P, Ding L, Wang Y R, Chen Y, Liu Y, Sun Z G, Feng H T, Liang X X, Fu R T, Tang C Q, Li Q, Zhang J, Xie Z L, Deng Q M, Li S C, Wang S Q, Zhu J, Wang L X, Liu H N, Li P. The evolution and pathogen mechanisms of the rice sheath blight pathogen. Nature Communications, 2013, 4: 1424.
[2] 左示敏, 张亚芳, 陈宗祥, 陈夕军, 潘学彪. 水稻抗纹枯病遗传育种研究进展. 中国科学: 生命科学, 2010, 40(11): 1014-1023.
Zuo S M, Zhang Y F, Chen Z X, Chen X J, Pan X B. Current progress in genetics and breeding in resistance to rice sheath blight. Scientia Sinica Vitae, 2010, 40(11): 1014-1023. (in Chinese)
[3] Mew T W, Cottyn B, Pamplona R, Barrios H, Xiangmin L, Zhiyi C, Fan L, Nilpanit N, Arunyanart P, Kim P V, Du P V. Applying rice seed-associated antagonistic bacteria to manage rice sheath blight in developing countries. Plant Disease, 2004, 88(5): 557-564.
[4] 易润华, 梁承邺, 朱西儒, 周而勋. 广东省水稻纹枯病菌群体遗传结构. 华南农业大学学报: 自然科学版, 2004, 25(3): 43-47.
Yi R H, Liang C Y, Zhu X R, Zhou E X. Genetic structure of rice sheath blight fungi population in Guangdong Province. Journal of South China Agricultural University: Natural Science Edition, 2004, 25(3): 43-47. (in Chinese)
[5] Linde C C, Zala M, Paulraj R S D, McDonald B A, Gnanamanickam S S. Population structure of the rice sheath blight pathogen Rhizoctonia solani AG-1 IA from India. European Journal of Plant Pathology, 2005, 112: 113-121.
[6] Taheri P, Gnanamanickam S, Höfte M. Characterization, genetic structure, and pathogenicity of Rhizoctonia spp. associated with rice sheath diseases in India. Phytopathology, 2007, 97(3): 373-383.
[7] 李挺丹, 彭世文, 王宗华, 鲁国东. 应用ISSR-PCR分析福建水稻纹枯菌的遗传多样性. 植物病理学报, 2010, 40(2): 186-194.
Li T D, Peng S W, Wang Z H, Lu G D. Genetic diversity analysis of Rhizoctonia solani populations from Fujian using Inter-Simple- Sequence Repeats (ISSR) technique. Acta Phytopathologica Sinica, 2010, 40(2): 186-194. (in Chinese)
[8] Bernardes-de-Assis J, Peyer P, Rush M C, Zala M, McDonald B A, Ceresini P C. Divergence between sympatric rice- and soybean- infecting populations of Rhizoctonia solani anastomosis group-1 IA. Phytopathology, 2008, 98(12): 1326-1333.
[9] Ciampi M B, Kuramae E E, Fenille R C, Meyer M C, Souza N L, Ceresini P C. Intraspecific evolution of Rhizoctonia solani AG-1 IA associated with soybean and rice in Brazil based on polymorphisms at the ITS-5.8S rDNA operon. European Journal of Plant Pathology, 2005, 113: 183-196.
[10] Zala M, McDonald B A, Bernardes-de-Assis J, Ciampi M B, Storari M, Peyer P. Highly polymorphic microsatellite loci in the rice- and maize-infecting fungal pathogen Rhizoctonia solani anastomosis group 1 IA. Molecular Ecology Resources, 2008, 8: 686-689.
[11] Padasht-Dehkaei F, Ceresini P C, Zala M, Okhovvat S M. Population genetic evidence that basidiospores play an important role in the disease cycle of rice-infecting populations of Rhizoctonia solani AG-1 IA in Iran. Plant Pathology, 2013, 62(1): 49-58.
[12] 陈涛, 张震, 柴荣耀, 王教瑜, 毛雪琴, 邱海萍, 杜新法, 姜华, 王立安, 王艳丽, 孙国昌. 浙江省水稻纹枯病菌的遗传分化与致病力研究. 中国水稻科学, 2010, 24(1): 67-72.
Chen T, Zhang Z, Chai R Y, Wang J Y, Mao X Q, Qiu H P, Du X F, Jiang H, Wang L A, Wang Y L, Sun G C. Genetic diversity and pathogenicity variation of different Rhizoctonia solani isolates in rice from Zhejiang province, China. Chinese Journal of Rice Science, 2010, 24(1): 67-72. (in Chinese)
[13] 王玲, 黄雯雯, 黄世文, 刘连盟, 刘恩勇. 浙皖鄂地区水稻纹枯病菌5个种群的遗传结构分析. 生态学报, 2010, 30(20): 5439-5447.
Wang L, Huang W W, Huang S W, Liu L M, Liu E Y. Genetic structure of five populations of the rice sheath blight pathogen Rhizoctonia solani AG-1 IA from provinces of Zhejiang, Anhui and Hubei. Acta Ecologica Sinica, 2010, 30(20): 5439-5447. (in Chinese)
[14] 周而勋, 杨媚. 从植物病组织中分离立枯丝核菌的快速、简便技术. 华南农业大学学报, 1998, 19(1): 125-126.
Zhou E X, Yang M. A rapid and simple technique for the isolation of Rhizoctonia solani from diseased plant tissues. Journal of South China Agriculture University, 1998, 19(1): 125-126. (in Chinese)
[15] Matsumoto M. Trials of direct detection and identification of Rhizoctonia solani AG 1 and AG 2 subgroups using specifically primed PCR analysis. Mycoscience, 2002, 43(2): 185-189.
[16] Yeh F C, Yang R C, Boyle T. Popgene Version 1.31 Quick User Guide. Canada: University of Alberta and Centre for International Forestry Research, 1999: 1-29.
[17] Goudet J. FSTAT is a computer package for PCs which estimates and tests gene diversities and differentiation statistics from codominant genetic markers. (version 2.9.3). 2002. http://www2.unil.ch/popgen/ softwares/fstat.htm.
[18] Rousset F. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 2008, 8: 103-106.
[19] Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 2005, 1: 47-50.
[20] Nei M. Molecular Evolutionary Genetics. New York: Columbia University Press, 1987.
[21] Wright S. The genetical structure of populations. Annals of Eugenics, 2011, 15(1): 323-354.
[22] Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 1978, 89: 583-590.
[23] Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 2013, 30(12): 2725-2729.
[24] Pritchard J K, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, 155: 945-959.
[25] Gao H, Williamson S, Bustamante C D. A markov chain monte carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data. Genetics, 2007, 176: 1635-1651.
[26] Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 2005, 14: 2611-2620.
[27] Rosenberg N A. DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes, 2004, 4: 137-138.
[28] González-Vera A D, Bernardes-de-Assis J, Zala M, McDonald B A, Correa-Victoria F, Graterol-Matute E J, Ceresini P C. Divergence between sympatric rice- and maize-infecting populations of Rhizoctonia solani AG-1 IA from Latin America. Phytopathology, 2010, 100(2): 172-182.
[29] Chaijuckam P, Back J M, Greer C A, Webster R K, Davis R M. Population structure of Rhizoctonia oryzae-sativae in California rice fields. Phytopathology, 2010, 100(5): 502-510.
[30] Rosewich U L, Pettway R E, McDonald B A, Kistler H C. High levels of gene flow and heterozygote excess characterize Rhizoctonia solani AG-1 IA (Thanatephorus cucumeris) from Texas. Fungal Genetics and Biology, 1999, 28: 148-159.
[31] Li Y, van der Lee T A J, Evenhuis A, van den Bosch G B M, van Bekkum P J, Förch M G, van Gent-Pelzer M P E, van Raaij H M G, Jacobsen E, Huang S W, Govers F, Vleeshouwers V G A A, Kessel G J T. Population dynamics of Phytophthora infestans in the Netherlands reveals expansion and spread of dominant clonal lineages and virulence in sexual offspring. G3: Genes/Genomes/Genetics, 2012, 2(12): 1529-1540.
[32] Enjalbert J, Duan X, Leconte M, Hovmøller M S, de Vallavieille-Pope C. Genetic evidence of local adaptation of wheat yellow rust (Puccinia striiformis f. sp. tritici) within France. Molecular Ecology, 2005, 14(7): 2065-2073.
[33] Ali S, Gladieux P, Rahman H, Saqib M S, Fiaz M, Ahmad H, Leconte M, Gautier A, Justesen A F, Hovmøller M S, Enjalbert J, de Vallavieille-Pope C. Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f. sp. tritici. Molecular Ecology, 2014, 23(3): 603-617.
[34] Heitman J. Sexual reproduction and the evolution of microbial pathogens. Current Biology, 2006, 16(17): R711-R725.
[35] Naito S. Ecological studies on teleomorphic and anamorphic stages in Rhizoctonia fungi. Journal of General Plant Pathology, 2006, 72(6): 400-403.
[36] McDonald B A, Linde C. Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology, 2002, 40: 349-379.
[37] Stukenbrock E H, McDonald B A. The origins of plant pathogens in agro-ecosystems. Annual Review of Phytopathology, 2008, 46: 75-100. |
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