Scientia Agricultura Sinica ›› 2012, Vol. 45 ›› Issue (2): 353-358.doi: 10.3864/j.issn.0578-1752.2012.02.018

• ANIMAL SCIENCE·RESOURCE INSECT • Previous Articles     Next Articles

cDNA-AFLP Analysis on Transcripts Associated Gene with Broodiness in Muscovy Duck

 WU  Xu, YAN  Mei-Jiao, LIU  Li-Ping, FU  Xing-Yuan, LIAN  Sen-Yang, LI  Ang   

  1. 1.福建农林大学动物科学学院,福州 350002
  • Received:2011-03-04 Online:2012-01-15 Published:2011-07-19

Abstract: 【Objective】 The objective of this experiment is to identify differentially expressed genes of Muscovy Duck broodiness. 【Method】cDNA-AFLP approach was employed to analyze genes differentially expressed in broodiness and non-broodiness Muscovy Duck individuals derived from a single RF white feathers line. 【Result】 There were 82 differentially expressed bands associated with broodiness behaviors, 15 bands of them were subject to sequence analysis. Database searches indicate that 8 cDNA fragments show high homology to known genes, which include some function genes in hypothalamic- pituitary-gonadal axis regulating reproduction, such as GnRH gene and FSH gene. Meanwhile genes were also found in GH-IGF axis, such as GH gene. Other genes participated in signal transduction, transcription, metabolism biological processes, such as superoxide dismutase, keratin related protein, thiocyanate enzyme release S-transferase enzymes etc. Two cDNA fragments show homology to unknown function genes, 5 cDNA fragments show no detectable homology to know genes, suggesting that they probably represent novel genes. Three bands selected randomly from them were confirmed by RT-PCR and that result was consistent with the results of cDNA-AFLP. 【Conclusion】 The results of this paper uncovered the regulation mode of gene express variation of different Muscovy Duck broodiness traits, and thus further providing the molecular mechanism of broodiness of Muscovy Duck.

Key words: Muscovy Duck (Cairina moschata), broodiness, cDNA-AFLP, gene expression profiling, differentially expressed genes

[1]李  昂, 王  宏, 朱明霞, 王寿昆, 王长康, 王光瑛. 番鸭就巢期生殖激素水平的变化规律. 畜牧兽医学报, 2004, 35(5): 522-525.

Li A, Wang H, Zhu M X, Wang S K, Wang C K, Wang G Y. The change regularity of the concentrations of reproductive hormone during the broody period in muscovy ducks. Acta Veterinaria et Zootechnica Sinica, 2004, 35(5): 522-525. (in Chinese)

[2]Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabezu M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 1995, 23(21): 4407-4414.

[3]Bachem C W, van der Hoeven R S, de Bruijn S M, Vreugdenhil D, Zabeau M, Visser R G. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. The Plant Journal, 1996, 9(5): 745-753.

[4]Reijans M, Lascaris R, Groeneger A O, Wittenberg A, Wesselink E, van Oeveren J, de Wit E, Boorsma A, Voetdijk B, van der Spek H, Grivell LA, Simons G. Quantitative comparison of cDNA-AFLP, microarrays, and genechip expression data in Saccharomyces cerevisiae. Genomics, 2003, 82(6): 606-618.

[5]Cappelli K, Verini-supplizi A, Capomaccio S, Silvestrelli M. Analysis of peripheral blood mononuclear cells gene expression in endurance horses by cDNA-AFLP technique. Research in Veterinary Science, 2007, 82(3): 335-343.

[6]杜玉珍, 高  锋. 用cDNA-AFLP技术筛选新生牛软骨无血管区的高表达基因. 中国生物化学与分子生物学报, 2008, 24(1): 55-59.

Du Y Z, Gao F. Screening high gxpressed genes in avascular region of cow cartilage by cDNA-AFLP analysis. Chinese Journal of Biochemistry and Molecular Biology, 2008, 24(1): 55-59. (in Chinese)

[7]Feng N, Li Y K, Tang J, Wang Y, Guo M L. cDNA-AFLP analysis on transcripts associated with hydroxysafflor yellow A (HSYA) biosynthetic pathway in Carthamus tinctorius. Biochemical Systematics and Ecology, 2010, 38(5): 971-980.

[8]曾  志, 王  平, 梁文裕, 唐  晰, 谢东丽, 郑少泉, 陈  伟. 龙眼成花逆转相关基因表达的cDNA-AFLP分析. 农业生物技术学报, 2009, 17(6): 1050-1055.

Zeng Z, Wang P, Liang W Y, Tang X, Xie D L, Zheng S Q, Chen W. cDNA-AFLP analysis of gene expression between normal flowering and flowering reversion buds in longan. Journal of Agricultural Biotechnology, 2009, 17(6): 1050-1055. (in Chinese)

[9]Jiang R S, Xu G Y, Zhang X Q, Yang N. Association of polymorphisms for prolactin and prolactin receptor genes with broody traits in chickens. Poultry Science, 2005, 84(6): 839-845.

[10]褚晓红, 胡锦平, 卢立志, 王亚琴, 陈维虎, 徐宁迎. 浙东白鹅催乳素受体基因的克隆及其表达特点的研究. 畜牧兽医学报, 2008, 39(6): 823-826.

Chu X H, Hu J P, Lu L Z, Wang Y Q, Chen W H, Xu N Y. Cloning of the prolactin receptor gene and studying on its expression characteristics in eastern Zhejiang White Geese. Acta Veterinaria et Zootechnica Sinica, 2008, 39(6): 823-826. (in Chinese)

[11]Dunn I C, Miao Y W, Morris A, Romanov M N, Wilson P W, Waddington D. A study of association between genetic markers in candidate genes and reproductive traits in one generation of a commercial broiler breeder hen population. Heredity, 2004, 92(2): 128-134.

[12]Wu X, Li H F, Yan M J, Tang Q P, Chen K W, Wang J Y, Gao Y S, Tu Y J, Yu Y B, Zhu W Q. Associations of Gonadotropin-releasing Hormone Receptor (GNRHR) and Neuropeptide Y (NPY) Genes’ Polymorphisms with Reproductive Traits in Wenchang Chicken. Scientia Agricultura Sinica, 2007, 6 (4): 499-505.

[13]Barnett D K, Bunnell T M, Millar R P, Abbott D H. Gonadotropin- releasing hormone II stimulates female sexual behavior in marmoset monkeys. Endocrinology, 2006, 147(1): 615-623.

[14]Ikemoto T, Enomoto M, Park M K. Identification and characterization of a reptilian GnRH receptor from the leopard gecko. Molecular and Cellular Endocrinology, 2004, 214(1-2): 137-147.

[15]Kim J H, Kim H J, Noh H S, Roh G S, Kang S S, Cho G J, Park S K, Lee B J, Choi W S. Suppression by ethanol of male reproductive activity. Brain Research, 2003, 989(1): 91-98.

[16]王凌燕, 王树迎, 侯衍猛, 谭雷涛. 哺乳动物下丘脑-垂体-卵巢轴的研究进展. 动物医学进展, 2005, 26(7): 8-11.

Wang L Y, Wang S Y, Hou Y M, Tan L T. Progress on mammalian hypothalamus-pituitary-ovary axis. Progress in Veterinary Medicine, 2005, 26(7): 8-11. (in Chinese)

[17]王光瑛, 王寿昆. 生殖激素对家禽就巢的调控. 福建农林大学学 报: 自然科学版, 2005, 34(1): 82-86.

Wang G Y, Wang S K. Controlling of reproductive hormones on poultry broodiness. Journal of Fujian Agriculture and Forestry University: Natural Science Edition, 2005, 34(1): 82-86. (in Chinese)

[18]Somoza G M, Miranda L A, Strobl-Mazzulla P, Guilgur L G. Gonadotropin-releasing hormone(GnRH): from fish to mammalian brains. Cellular and Molecular Neurobiology, 2002, 22(5-6): 589-609.

[19]Singh A K, Lal B. Seasonal and circadian time-dependent dual action of GH on somatic growth and ovarian development in the Asian catfish, Clarias batrachus(Linn.): role of temperature. General and Comparative Endocrinology, 2008, 159(1): 98-106. 

[20]Shved N, Berishvili G, D’Cotta H, Baroiller J F, Segner H, Eppler E, Reinecke M. Ethinylestradiol differentially interferes with IGF-I in liver and extrahepatic sites during development of male and female bony fish. Journal of Endocrinology, 2007, 195(3): 513-523.

[21]许盛海, 包文斌, 程金花, 黄  军, 张红霞, 陈国宏. 鸭生长激素(GH)基因编码区及调控区多态性分析. 畜牧兽医学报, 2007, 38(9): 907-912.

Xu S H, Bao W B, Cheng J H, Huang J, Zhang H X, Chen G H. Polymorphism analysis on coding and regulation regions of growth hormone gene in duck. Acta Veterinaria et Zootechnica Sinica, 2007, 38(9): 907-912. (in Chinese)

[22]Sarang M K, Lal B. Effect of piscine GH/IGF-1 on final oocyte maturation in vitro in Heteropneustes fossilis. Fish Physiology and Biochemistry, 2005, 31(2-3): 231-233.

[23]Naor Z, Benard O, Seger R. Activation of MAPK cascades by G-protein-coupled receptors: the case of gonadotropin-releasing hormone receptor. Trends in Endocrinology and Metabolism, 2000, 11(3): 91-99.

[24]Kang S K, Tai C J, Cheng K W, Leung P C. Gonadotropin-releasing hormone activates mitogen- activated protein kinase in human ovarian and placental cells. Molecular and Cellular Endocrinology, 2000, 170(1-2): 143-151.

[25]Xu Z S, Xia L Q, Chen M, Cheng X G, Zhang R Y, Li L C, Zhao Y X, Lu Y, Ni Z Y, Liu L, Qiu Z G, Ma Y Z. Isolation and molecular characterization of the Triticum aestivum L. Ethylene- responsive factor 1(TaERF1) that increases multiple stress tolerance. Plant Molecular Biology, 2007, 65(6): 719-732.

[26]Cheong Y H, Moon B C, Kim J K, Kim C Y, Kim M C, Kim I H, Park C Y, Kim J C, Park B O, Koo S C, Yoon H W, Chung W S, Lim C O, Lee S Y, Cho M J. Bwmk1, a rice mitogen- activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiology, 2003, 132(4): 1961-1972.
[1] LIU Kai,HE ShanShan,ZHANG CaiXia,ZHANG LiYi,BIAN ShuXun,YUAN GaoPeng,LI WuXing,KANG LiQun,CONG PeiHua,HAN XiaoLei. Identification and Analysis of Differentially Expressed Genes in Adventitious Shoot Regeneration in Leaves of Apple [J]. Scientia Agricultura Sinica, 2021, 54(16): 3488-3501.
[2] LIU Yuan,LI WenYang,WU XianFeng,HUANG QinLou,GAO ChengFang,CHEN XinZhu,ZHANG XiaoPei. Transcriptome Analysis of Differentially Gene Expression Associated with longissimus doris Tissue in Fuqing Goat and Nubian Black Goat [J]. Scientia Agricultura Sinica, 2019, 52(14): 2525-2537.
[3] WANG DanDan, TANG YuTing, MA YueHui, WANG LiGang, PAN DengKe, JIANG Lin. Studying the Molecular Mechanism of Heart Development by Using ZBED6 Gene Knockout Pig [J]. Scientia Agricultura Sinica, 2018, 51(7): 1390-1400.
[4] LIU HongXiang,XU WenJuan,ZHU ChunHong,TAO ZhiYun,SONG WeiTao,ZHANG ShuangJie,LI HuiFang. RNA-seq Analysis on Development Arrest of Duck Pectoralis Muscle During Semi-Late Embryonic Period [J]. Scientia Agricultura Sinica, 2018, 51(22): 4373-4386.
[5] LIU HongBo, LIU XinLong, SU HuoSheng, LU Xin, XU ChaoHua, MAO Jun, LIN XiuQin, LI ChunJia, LI XuJuan, ZI QiuYan. Transcriptome Difference Analysis of Saccharum spontaneum Roots in Response to Drought Stress [J]. Scientia Agricultura Sinica, 2017, 50(6): 1167-1178.
[6] LI Li, MIAO ZhongWei, XIN QingWu, ZHU ZhiMing, ZHANG LinLi, ZHUANG XiaoDong, ZHENG NenZhu. Transcriptome Analysis of Differential Gene Expression Associated with Testis Tissue in Mule Duck and Muscovy Duck [J]. Scientia Agricultura Sinica, 2017, 50(18): 3608-3619.
[7] ZHU Zhi-ming, CHEN Hong-ping, LIN Ru-long, MIAO Zhong-wei, XIN Qing-wu, LI Li, ZHANG Dan-qing, ZHENG Nen-zhu. Transcriptome Analysis of Ovary Tissue in Early Laying Period and Egg Laying Peak Period of Shanma Ducks [J]. Scientia Agricultura Sinica, 2016, 49(5): 998-1007.
[8] GENG Li-ying, PAN Su-min, CHEN Juan, ZHU Wen-jin, GONG Yuan-fang, LIU Zheng-zhu, PENG Yong-dong, ZHAO Shu-yu, ZHANG Chuan-sheng, LI Xiang-long . Identification and Bioinformatics Analysis of Differential Expression MicroRNAs in the Spleen Between Beijing Fatty Chickens and Leghorns Chickens [J]. Scientia Agricultura Sinica, 2016, 49(4): 754-764.
[9] XU Pan, ZHANG Zhen, ZHANG Feng, YANG Bin, DUAN Yan-yu. Identification of Candidate Genes for Hematological Traits by Integrating Gene Expression Profiling and Genome-Wide Association Study in a Porcine Model [J]. Scientia Agricultura Sinica, 2016, 49(2): 348-360.
[10] YUE Xiao-feng, QUE Ya-wei, WANG Zheng-yi. Analysis of RNA-Seq-Based Expression Profiles of Δznf1 Mutants in Magnaporthe oryzae [J]. Scientia Agricultura Sinica, 2016, 49(17): 3347-3358.
[11] LUAN Zhao-Jie, CAO Yuan-Yin, LI Tian-Ya, CHEN Si, CHEN Xiu-Mei, ZHU Gui-Qing, LI Wei-Hua. cDNA-AFLP Analysis of Differentially Expressed Resistant Genes of Minn2761 [J]. Scientia Agricultura Sinica, 2013, 46(23): 5058-5065.
[12] CAO Shi-Xian, CHENG Xi, JIANG Zheng-Zhong, SHENG Liang, SHANG Guan-Ming-Zhu, DENG Wei-Wei, WEI Chao-Ling. Differential Genes Expression in Tea Plant (Cameilla sinensis L.) Induced by Ectropis oblique Feeding Based on cDNA-AFLP [J]. Scientia Agricultura Sinica, 2013, 46(19): 4119-4130.
[13] CHENG Chun-Zhen-12, ZENG Ji-Wu-2, BEI Xue-Jun-12, WU Bo-12, YANG Jia-Wei-3, ZHANG Yong-Yan-12, JIANG Bo-2, ZHU Shi-Ping-1, YAN Shu-Tang-1, ZHONG Yun-2, ZHONG Guang-Yan-2. Screening of ‘Jincheng’ Orange CTV Response Genes Using Subtractive Suppression Hybridization [J]. Scientia Agricultura Sinica, 2013, 46(16): 3413-3423.
[14] YANG Rui-Xian, FAN Xiao-Jing, QIU Si-Xin, CAI Xue-Qing, HU Fang-Ping. cDNA-AFLP Analysis of Differential Gene Expression in Pepper Inoculated with Endophytic Bacillus amyloliquefaciens Fy11 [J]. Scientia Agricultura Sinica, 2013, 46(12): 2449-2458.
[15] DU Xiao-Hui, LI Cong-Yan, LIU Jun-Ying, NIU Wei-He, ZHANG Xi-Quan. Polymorphism of Chicken Prolactin Receptor Gene and It’s Association with Broodiness and Egg Reproduction Traits [J]. Scientia Agricultura Sinica, 2013, 46(12): 2558-2565.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!