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A compound produced by Helicoverpa armigera male genitalia activates a conserved pheromone receptor
Dongdong Sun, Yutong Zhang, Song Cao, Xiaoqing Wang, Qian Cao, Sai Zhang, Yang Liu
2025, 24 (5): 1892-1904.   DOI: 10.1016/j.jia.2024.07.019
Abstract34)      PDF in ScienceDirect      

Mating behavior is essential for sexual reproduction, and it is often modulated by key chemical cues.  In many moth species, males find compatible mates through the reception of sex pheromones which are released by females.  Pheromone receptors (PRs) are key elements in sensing these chemical signals.  Concurrently, male moths emit a complex blend of volatile compounds during courtship; however, the mechanisms for recognizing putative male pheromones remain poorly understood.  Here, we employed gas chromatography coupled with electroantennographic detection and mass spectrometry to analyze the volatile compounds produced by males of the cotton bollworm, Helicoverpa armigera.  Three candidate male sex pheromones were identified, with (Z)-7-dodecen-1-yl acetate (Z7-12:OAc) eliciting the most pronounced electrophysiological response in the male antenna.  The olfactory receptor neuron (ORN) ORN-a in Type A trichoid sensilla was shown to respond to Z7-12:OAc by conducting single sensillum recording (SSR) assays.  Additionally, we found that the OR13s from five Heliothinae species responded to Z7-12:OAc by using the Xenopus oocyte expression system and two-electrode voltage-clamp recording.  Our findings identified a candidate for evaluation in future behavioral studies of the poorly understood chemosensory recognition mechanisms underlying male sex pheromones.  If its relevance is supported by behavioral data, this knowledge may facilitate the design of novel olfactory regulators for effective pest control strategies involving mating disruption.

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Crop straw incorporation increases the soil carbon stock by improving the soil aggregate structure without stimulating soil heterotrophic respiration
Hongyu Lin, Jing Zheng, Minghua Zhou, Peng Xu, Ting Lan, Fuhong Kuang, Ziyang Li, Zhisheng Yao, Bo Zhu
2025, 24 (4): 1542-1561.   DOI: 10.1016/j.jia.2024.09.026
Abstract63)      PDF in ScienceDirect      
Crop straw incorporation is widely recommended to maintain crop yields and improve soil organic carbon (SOC) stocks as well as soil quality.  However, the long-term effects of different straw incorporation practices on the SOC stock remain uncertain.  In this study, a long-term experiment (2007 to 2018) with four treatments (MW0: maize–wheat rotation with no straw incorporation, MW50: maize–wheat rotation with 50% chopped straw incorporation, MWb50: maize–wheat rotation with 50% in situ burned harvested straw, and MF50: maize–fallow rotation with 50% harvested maize straw incorporation) was set up to evaluate the response of the SOC stock to different straw incorporation methods.  The results showed that the SOC stock significantly increased by 32.4, 12.2 and 17.4% under the MW50, MWb50 and MF50 treatments, respectively, after continuous straw incorporation over a decade, while the SOC stock under MW0 was significantly reduced by 22.9% after the 11 year long-term experiment.  Compared to MW0, straw incorporation significantly increased organic carbon input, and improved the soil aggregate structure and the ratio of dissolved organic carbon (DOC) to particulate organic carbon (POC), but it did not significantly stimulate soil heterotrophic respiration, resulting in the increased SOC accumulation rate and SOC stocks of bulk soil.  The increased ratio of DOC to microbial biomass carbon (MBC) enhanced the relative abundances of Acidobacteria and Proteobacteria but inhibited Bacteroidetes and Chloroflexi, and the bacterial relative abundances were the main reasons for the non-significant increase or even decrease in soil heterotrophic respiration with straw incorporation.  The SOC stock would reach an equilibrium based on the results of Rothamsted carbon (RothC) model simulations, with a long-term equilibrium value of 18.85 Mg ha–1 under MW50.  Overall, the results of the long-term field experiment (2007–2018) and RothC model simulation suggested that maize–wheat rotation with 50% chopped straw incorporation delivered the largest benefits for the SOC stock in calcareous soils of subtropical mountain landscapes over the long term.


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16S amplicon sequencing and untargeted metabolomics reveal changes in rumen microorganisms and metabolic pathways involved in the reduction of methane by cordycepin
Haokai Ma, Dengke Liu, Rui Liu, Yang Li, Modinat Tolani Lambo, Baisheng Dai, Weizheng Shen, Yongli Qu, Yonggen Zhang
2025, 24 (4): 1310-1326.   DOI: 10.1016/j.jia.2024.04.014
Abstract48)      PDF in ScienceDirect      
As a major contributor to methane production in agriculture, there is a need for a suitable methane inhibitor to reduce ruminant methane emissions and minimize the impact on the climate.  This work aimed to explore the influence of cordycepin on rumen fermentation, gas production, microbiome and their metabolites.  A total of 0.00, 0.08, 0.16, 0.32, and 0.64 g L–1 cordycepin were added into fermentation bottles containing 2 g total mixed ration for in vitro ruminal fermentation, and then the gas produced and fermentation parameters were measured for each bottle.  Samples from the 0 and 0.64 g L–1 cordycepin addition were selected for 16S rRNA gene sequencing and metabolome analysis.  The result of this experiment indicated that the addition of cordycepin could linearly increase the concentration of total volatile fatty acid, ammonia nitrogen, the proportion of propionate, valerate, and isovalerate, and linearly reduce ruminal pH and methane, carbon dioxide, hydrogen and total gas production, as well as the methane proportion, carbon dioxide proportion and proportion of butyrate.  In addition, there was a quadratic relationship between hydrogen and cordycepin addition.  At the same time, the relative abundance of Succiniclasticum, Prevotella, Rikenellaceae_RC9_gut_group, NK4A214_group, Christensenellaceae_R_7_group, unclassified_F082, Veillonellaceae_UCG_001, Dasytricha, Ophryoscolex, Isotricha, unclassified_Eukaryota, Methanobrevibacter, and Piromyces decreased significantly after adding the maximum dose of cordycepin.  In contrast, the relative abundance of Succinivibrio, unclassified_Succinivibrionaceae, Prevotellaceae_UCG_001, unclassified_Lachnospiraceae, Lachnospira, Succinivibrionaceae_UCG_002, Pseudobutyrivibrio, Entodinium, Polyplastron, unclassified_Methanomethylophilaceae, Methanosphaera, and Candidatus_Methanomethylophilus increased significantly.  Metabolic pathways such as biosynthesis of unsaturated fatty acids and purine metabolism and metabolites such as arachidonic acid, adenine, and 2´-deoxyguanosine were also affected by the addition of cordycepin.  Based on this, we conclude that cordycepin is an effective methane emission inhibitor that can change the rumen metabolites and fermentation parameters by influencing the rumen microbiome, thus regulating rumen methane production.  This experiment may provide a potential theoretical reference for developing Cordyceps byproduct or additives containing cordycepin as methane inhibitors.


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Brassinosteroids alleviate wheat floret degeneration under low nitrogen stress by promoting the redistribution of sucrose from stems to spikes
Zimeng Liang, Xidan Cao, Rong Gao, Nian Guo, Yangyang Tang, Vinay Nangia, Yang Liu
2025, 24 (2): 497-516.   DOI: 10.1016/j.jia.2023.12.017
Abstract109)      PDF in ScienceDirect      

The trade-off between yield and environmental effects caused by nitrogen fertilizer application is an important issue in wheat production.  A reduction in fertile florets is one of the main reasons for the lower yields under low nitrogen application rates.  Brassinosteroids (BRs) have been found to play a role in nitrogen-induced rice spikelet degeneration.  However, whether BRs play a role in wheat floret development and the mechanisms involved are not clear.  Therefore, a nitrogen gradient experiment and exogenous spraying experiment were conducted to investigate the role and mechanism of BRs in wheat floret development under low nitrogen stress.  The results showed that as the nitrogen application decreased, the endogenous BRs content of the spikes decreased, photosynthesis weakened, and total carbon, soluble sugar and starch in the spikes decreased, leading to a reduction in the number of fertile florets.  Under low nitrogen stress, exogenous spraying of 24-epibrassinolide promoted photosynthesis, and stimulated stem fructan hydrolysis and the utilization and storage of sucrose in spikes, which directed more carbohydrates to the spikes and increased the number of fertile florets.  In conclusion, BRs mediate the effects of nitrogen fertilizer on wheat floret development, and under low nitrogen stress, foliar spraying of 24-epibrassinolide promotes the flow of carbohydrates from the stem to the spikes, alleviating wheat floret degeneration.

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The VGLL2 gene participates in muscle development in Gushi chickens
Wenya Li, Haoxiang Ma, Yanxing Wang, Yushi Zhang, Yang Liu, Ruili Han, Hong Li, Hanfang Cai, Xiaojun Liu, Xiangtao Kang, Ruirui Jiang, Zhuanjian Li
2025, 24 (1): 246-260.   DOI: 10.1016/j.jia.2023.06.017
Abstract148)      PDF in ScienceDirect      
Previous studies have shown that VGLL2, a member of the mammalian Vestigial-like (VGLL) family, plays important roles in the growth and development of animal skeletal muscle, but its specific role in the development of chicken skeletal muscle is unclear.  The main goal of this study was to explore the biological functions of VGLL2 in the development of chicken skeletal muscle and the proliferation and differentiation of skeletal muscle cells in vitro.  In this study, we detected the effect of VGLL2 on the proliferation of myoblasts by CCK8, EdU and flow cytometry analyses after overexpressing and interfering with VGLL2.  Indirect immunofluorescence was used to detect the effect of VGLL2 on the differentiation of myoblasts.  qRT-PCR and hematoxylin and eosin (H&E) staining were used to evaluate the effects of VGLL2 overexpression on the growth rate and muscle fiber structure of chicken skeletal muscle.  The results showed that VGLL2 inhibited the proliferation of primary cultured chicken myoblasts and promoted the differentiation of these cells.  Interestingly, food intake and muscle fiber development were significantly enhanced by the overexpression of VGLL2 in chickens.  Taken together, these data demonstrate that the VGLL2 gene may be a useful marker for improving muscle mass in poultry.
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Identification and characterization of FpRco1 in regulating vegetative growth and pathogenicity based on T-DNA insertion in Fusarium pseudograminearum
Haiyang Li, Yuan Zhang, Cancan Qin, Zhifang Wang, Lingjun Hao, Panpan Zhang, Yongqiang Yuan, Chaopu Ding, Mengxuan Wang, Feifei Zan, Jiaxing Meng, Xunyu Zhuang, Zheran Liu, Limin Wang, Haifeng Zhou, Linlin Chen, Min Wang, Xiaoping Xing, Hongxia Yuan, Honglian Li, Shengli Ding
2024, 23 (9): 3055-3065.   DOI: 10.1016/j.jia.2024.01.001
Abstract161)      PDF in ScienceDirect      
Fusarium pseudograminearum is a devastating pathogen that causes Fusarium crown rot (FCR) in wheat and poses a significant threat to wheat production in terms of grain yield and quality.  However, the mechanism by which Fpseudograminearum infects wheat remains unclear.  In this study, we aimed to elucidate these mechanisms by constructing a T-DNA insertion mutant library for the highly virulent strain WZ-8A of Fpseudograminearum.  By screening this mutant library, we identified nine independent mutants that displayed impaired pathogenesis in barley leaves.  Among these mutants, one possessed a disruption in the gene FpRCO1 that is an ortholog of Saccharomyces cerevisiae RCO1, encoding essential component of the Rpd3S histone deacetylase complex in F. pseudograminearum.  To further investigate the role of FpRCO1 in Fpseudograminearum, we employed a split-marker approach to knock out FpRCO1 in Fpseudograminearum WZ-8A.  FpRCO1 deletion mutants exhibit reduced vegetative growth, conidium production, and virulence in wheat coleoptiles and barley leaves, whereas the complementary strain restores these phenotypes.  Moreover, under stress conditions, the FpRCO1 deletion mutants exhibited increased sensitivity to NaCl, sorbitol, and SDS, but possessed reduced sensitivity to H2O2 compared to these characteristics in the wild-type strain.  RNA-seq analysis revealed that deletion of FpRCO1 affected gene expression (particularly the downregulation of TRI gene expression), thus resulting in significantly reduced deoxynivalenol (DON) production.  In summary, our findings highlight the pivotal role of FpRCO1 in regulating vegetative growth and development, asexual reproduction, DON production, and pathogenicity of Fpseudograminearum.  This study provides valuable insights into the molecular mechanisms underlying Fpseudograminearum infection in wheat and may pave the way for the development of novel strategies to combat this devastating disease.


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Resistance development, cross-resistance, and fitness costs associated with Aphis gossypii resistance towards sulfoxaflor and acetamiprid in different geographical regions
Wei Wang, Renfu Zhang, Haiyang Liu, Ruifeng Ding, Qiushi Huang, Ju Yao, Gemei Liang
2024, 23 (7): 2332-2345.   DOI: 10.1016/j.jia.2023.07.029
Abstract132)      PDF in ScienceDirect      

Aphis gossypii has become increasingly difficult to manage due to its strong insecticide resistance.  In the laboratory, we established sulfoxaflor-resistant and acetamiprid-resistant strains in two A. gossypii populations with different basal insecticide resistance levels, and evaluated the effects of basal insecticide resistance on the resistance development and cross-resistance, as well as differences in fitness.  Under the same selection pressure, Yarkant A. gossypii (with low basal insecticide resistance) evolved resistance to sulfoxaflor and acetamiprid more quickly than Jinghe A. gossypii (with high basal insecticide resistance), and the evolution of A. gossypii resistance to sulfoxaflor developed faster than acetamiprid in both Yarkant and Jinghe, Xingjiang, China.  The sulfoxaflor-resistant strains selected from Yarkant and Jinghe developed significant cross-resistance to acetamiprid, imidacloprid, thiamethoxam and pymetrozine; while the acetamiprid-resistant strains developed significant cross-resistance to sulfoxaflor, imidacloprid, thiamethoxam, pymetrozine, and chlorpyrifos.  The relative fitness of A. gossypii decreased as the resistance to sulfoxaflor and acetamiprid developed.  The relative fitness levels of the sulfoxaflor-resistant strains (Yarkant-SulR and Jinghe-SulR) were lower than those of the acetamiprid-resistant strains (Yarkant-AceR and Jinghe-AceR).  In addition, the relative fitness levels of sulfoxaflor- and acetamiprid-resistant strains were lower in Jinghe than in Yarkant.  In summary, basal insecticide resistance of A. gossypii and insecticide type affected the evolution of resistance to insecticides in A. gossypii, as well as cross-resistance to other insecticides.  The sulfoxaflor- and acetamiprid-resistant A. gossypii strains had obvious fitness costs.  The results of this work will contribute to the insecticide resistance management and integrated management of A. gossypii.

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Identification of transient receptor potential channel genes and functional characterization of TRPA1 in Spodoptera frugiperda 

Yutong Zhang, Hangwei Liu, Song Cao, Bin Li, Yang Liu, Guirong Wang
2024, 23 (6): 1994-2005.   DOI: 10.1016/j.jia.2023.09.023
Abstract126)      PDF in ScienceDirect      

Spodoptera frugiperda is a highly destructive pest that has become a global problem due to its robust reproductive and migratory capabilities.  Transient receptor potential (TRP) channels, which constitute a vast ion channel family, play pivotal roles in sensing the external environment and maintaining internal homeostasis in insects.  TRP channels have been widely investigated for their critical roles in regulating various insect behaviors in recent years.  In this study, we identified 15 TRP gene loci encoding 26 transcripts in the genome of Sfrugiperda and analyzed their expression profiles at different developmental stages.  The results revealed that Sfrugiperda possesses four TRPC genes, six TRPA genes, one TRPM gene, two TRPV genes, one TRPN gene, and one TRPML gene, while a canonical TRPP is absent.  Moreover, the SfruTRPA1 was functionally characterized using the Xenopus oocyte expression system.  The results showed that SfruTRPA1 is activated by temperature increases from 20 to 45°C, and there is no significant desensitization after repeated stimuli within the same temperature range.  Additionally, SfruTRPA1 is activated by certain natural chemicals, including allyl isothiocyanate (AITC) and cinnamaldehyde (CA).  These findings provide valuable insights to the TRP genes in Sfrugiperda.

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The auxin transporter OsAUX1 regulates tillering in rice (Oryza sativa)

Luqi Jia, Yongdong Dai, Ziwei Peng, Zhibo Cui, Xuefei Zhang, Yangyang Li, Weijiang Tian, Guanghua He, Yun Li, Xianchun Sang
2024, 23 (5): 1454-1467.   DOI: 10.1016/j.jia.2023.05.041
Abstract246)      PDF in ScienceDirect      
Tillering is an important agronomic trait of rice (Oryza sativa) that affects the number of effective panicles, thereby affecting yields.  The phytohormone auxin plays a key role in tillering.  Here we identified the high tillering and semi-dwarf 1 (htsd1) mutant with auxin-deficiency root characteristics, such as shortened lateral roots, reduced lateral root density, and enlarged root angles.  htsd1 showed reduced sensitivity to auxin, but the external application of indole-3-acetic acid (IAA) inhibited its tillering.  We identified the mutated gene in htsd1 as AUXIN1 (OsAUX1, LOC_Os01g63770), which encodes an auxin influx transporter.  The promoter sequence of OsAUX1 contains many SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) binding sites, and we demonstrated that SPL7 binds to the OsAUX1 promoter.  TEOSINTE BRANCHED1 (OsTB1), a key gene that negatively regulates tillering, was significantly downregulated in htsd1.  Tillering was enhanced in the OsTB1 knockout mutant, and the external application of IAA inhibited tiller elongation in this mutant.  Overexpressing OsTB1 restored the multi-tiller phenotype of htsd1.  These results suggest that SPL7 directly binds to the OsAUX1 promoter and regulates tillering in rice by altering OsTB1 expression to modulate auxin signaling.
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Characterization of Domeless receptors and the role of BdDomeless3 in anti-symbiont-like virus defense in Bactrocera dorsalis
Wei Zhang, Shaoyang Li, Rong Li, Jinzhi Niu, Jinjun Wang
2024, 23 (4): 1274-1284.   DOI: 10.1016/j.jia.2023.10.003
Abstract107)      PDF in ScienceDirect      

The Janus kinase/signal transducers and activators of transcription (JAK/STAT) signaling pathway play a pivotal role in innate immunity.  Among invertebrates, Domeless receptors serve as the key upstream regulators of this pathway.  In our study on Bactrocera dorsalis, we identified three cytokine receptors: BdDomeless1, BdDomeless2, and BdDomeless3.  Each receptor encompasses five fibronectin-type-III-like (FN III) extracellular domains and a transmembrane domain.  Furthermore, these receptors exhibit the increased responsiveness to diverse pathogenic challenges.  Notably, only BdDomeless3 is upregulated during symbiont-like viral infections.  Moreover, silencing BdDomeless3 enhanced the infectivity of Bactrocera dorsalis cripavirus (BdCV) and B. dorsalis picorna-like virus (BdPLV), underscoring BdDomeless3’s crucial role in antiviral defense of B. dorsalis.  Following the suppression of Domeless3 expression, six antimicrobial peptide genes displayed decreased expression, potentially correlating with the rise in viral infectivity.  To our knowledge, this is the first study identifying cytokine receptors associated with the JAK/STAT pathway in tephritid flies, shedding light on the immune mechanisms of B. dorsalis.

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The microbial community, nutrient supply and crop yields differ along a potassium fertilizer gradient under wheat–maize double-cropping systems
Zeli Li, Fuli Fang, Liang Wu, Feng Gao, Mingyang Li, Benhang Li, Kaidi Wu, Xiaomin Hu, Shuo Wang, Zhanbo Wei , Qi Chen, Min Zhang, Zhiguang Liu
2024, 23 (10): 3592-3609.   DOI: 10.1016/j.jia.2024.01.031
Abstract80)      PDF in ScienceDirect      
Soil microorganisms play critical roles in ecosystem function.  However, the relative impact of the potassium (K) fertilizer gradient on the microbial community in wheat‒maize double-cropping systems remains unclear.  In this long-term field experiment (2008–2019), we researched bacterial and fungal diversity, composition, and community assemblage in the soil along a K fertilizer gradient in the wheat season (K0, no K fertilizer; K1, 45 kg ha−1 K2O; K2, 90 kg ha−1 K2O; K3, 135 kg ha−1 K2O) and in the maize season (K0, no K fertilizer; K1, 150 kg ha−1 K2O; K2, 300 kg ha−1 K2O; K3, 450 kg ha−1 K2O) using bacterial 16S rRNA and fungal internally transcribed spacer (ITS) data.  We observed that environmental variables, such as mean annual soil temperature (MAT) and precipitation, available K, ammonium, nitrate, and organic matter, impacted the soil bacterial and fungal communities, and their impacts varied with fertilizer treatments and crop species.  Furthermore, the relative abundance of bacteria involved in soil nutrient transformation (phylum Actinobacteria and class Alphaproteobacteria) in the wheat season was significantly increased compared to the maize season, and the optimal K fertilizer dosage (K2 treatment) boosted the relative bacterial abundance of soil nutrient transformation (genus Lactobacillus) and soil denitrification (phylum Proteobacteria) bacteria in the wheat season.  The abundance of the soil bacterial community promoting root growth and nutrient absorption (genus Herbaspirillum) in the maize season was improved compared to the wheat season, and the K2 treatment enhanced the bacterial abundance of soil nutrient transformation (genus MND1) and soil nitrogen cycling (genus Nitrospira) genera in the maize season.  The results indicated that the bacterial and fungal communities in the double-cropping system exhibited variable sensitivities and assembly mechanisms along a K fertilizer gradient, and microhabitats explained the largest amount of the variation in crop yields, and improved wheat‒maize yields by 11.2–22.6 and 9.2–23.8% with K addition, respectively.  These modes are shaped contemporaneously by the different meteorological factors and soil nutrient changes in the K fertilizer gradients.


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The Clausena lansium genome provides new insights into alkaloid diversity and the evolution of the methyltransferase family
Yongzan Wei, Yi Wang, Fuchu Hu, Wei Wang, Changbin Wei, Bingqiang Xu, Liqin Liu, Huayang Li, Can Wang, Hongna Zhang, Zhenchang Liang, Jianghui Xie
2024, 23 (10): 3537-3553.   DOI: 10.1016/j.jia.2024.07.043
Abstract101)      PDF in ScienceDirect      
Wampee (Clausena lansium) is an important evergreen fruit tree native to southern China that has a long history of use for medicinal purposes.  Here, a chromosome-level genome of Clansium was constructed with a genome size of 282.9 Mb and scaffold N50 of 30.75 Mb.  The assembled genome contains 48.70% repetitive elements and 24,381 protein-coding genes.  Comparative genomic analysis showed that Clansium diverged from Aurantioideae 15.91–24.95 million years ago.  Additionally, some expansive and specific gene families related to methyltransferase activity and S-adenosylmethionine-dependent methyltransferase activity were also identified.  Further analysis indicated that N-methyltransferase (NMT) is mainly involved in alkaloid biosynthesis and O-methyltransferase (OMT) participates in the regulation of coumarin accumulation in wampee.  This suggested that wampee’s richness in alkaloids and coumarins might be due to the gene expansions of NMT and OMT.  The tandem repeat event was one of the major reasons for the NMT expansion.  Hence, the reference genome of Clansium will facilitate the identification of some useful medicinal compounds from wampee resources and reveal their biosynthetic pathways.


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Novel 18β-glycyrrhetinic acid amide derivatives show dual-acting capabilities for controlling plant bacterial diseases through ROS-mediated antibacterial efficiency and activating plant defense responses
SONG Ying-lian, LIU Hong-wu, YANG Yi-hong, HE Jing-jing, YANG Bin-xin, YANG Lin-li, ZHOU Xiang, LIU Li-wei, WANG Pei-yi, YANG Song
2023, 22 (9): 2759-2771.   DOI: 10.1016/j.jia.2022.10.009
Abstract205)      PDF in ScienceDirect      

Natural products have long been a crucial source of, or provided inspiration for new agrochemical discovery.  Naturally occurring 18β-glycyrrhetinic acid shows broad-spectrum bioactivities and is a potential skeleton for novel drug discovery.  To extend the utility of 18β-glycyrrhetinic acid for agricultural uses, a series of novel 18β-glycyrrhetinic acid amide derivatives were prepared and evaluated for their antibacterial potency.  Notably, compound 5k showed good antibacterial activity in vitro against Xanthomonas oryzae pv. oryzae (Xoo, EC50=3.64 mg L–1), and excellent protective activity (54.68%) against Xoo in vivo.  Compound 5k induced excessive production and accumulation of reactive oxygen species in the tested pathogens, resulting in damaging the bacterial cell envelope.  More interestingly, compound 5k could increase the activities of plant defense enzymes including catalase, superoxide dismutase, peroxidase, and phenylalanine ammonia lyase.  Taken together, these enjoyable results suggested that designed compounds derived from 18β-glycyrrhetinic acid showed potential for controlling intractable plant bacterial diseases by disturbing the balance of the phytopathogen’s redox system and activating the plant defense system

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Identification of key genes involved in flavonoid and terpenoid biosynthesis and the pathway of triterpenoid biosynthesis in Passiflora edulis
XU Yi, HUANG Dong-mei, MA Fu-ning, YANG Liu, WU Bin, XING Wen-ting, SUN Pei-guang, CHEN Di, XU Bing-qiang, SONG Shun
2023, 22 (5): 1412-1423.   DOI: 10.1016/j.jia.2023.03.005
Abstract348)      PDF in ScienceDirect      

Passion fruit (Passiflora edulis Sims) is a vine of the Passiflora genus in the Passifloraceae family.  The extracted components include flavonoids and terpenoids, which have good anti-anxiety and anti-inflammatory effects in humans.  In this study, we analyzed the transcriptomes of four tissues of the ‘Zixiang’ cultivar using RNA-Seq, which provided a dataset for functional gene mining.  The de novo assembly of these reads generated 96 883 unigenes, among which 61 022 unigenes were annotated (62.99% yield).  In addition to its edible value, another important application of passion fruit is its medicinal value.  The flavonoids and terpenoids are mainly derivatives of luteolin, apigenin, cycloartane triterpenoid saponins and other active substances in leaf extracts.  A series of candidate unigenes in the transcriptome data that are potentially involved in the flavonoid and terpenoid synthesis pathways were screened using homology-based BLAST and phylogenetic analysis.  The results showed that the biosynthesis of triterpenoids in passion fruit comes from the branches of the mevalonate (MVA) and 2-C-methyl-D-erythritol 4-phosphate/1-deoxy-D-xylulose 5-phosphate (MEP/DOXP) pathways, which is different from the MVA pathway that is used in other fruit trees.  Most of the candidate genes were found to be highly expressed in the leaves and/or flowers.  Quantitative real-time PCR (qRT-PCR) verification was carried out and confirmed the reliability of the RNA-Seq data.  Further amplification and functional analysis of these putative unigenes will provide additional insight into the biosynthesis of flavonoids and terpenoids in passion fruit.

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Discrimination of individual seed viability by using the oxygen consumption technique and headspace-gas chromatography-ion mobility spectrometry
TU Ke-ling, YIN Yu-lin, YANG Li-ming, WANG Jian-hua, SUN Qun
2023, 22 (3): 727-737.   DOI: 10.1016/j.jia.2022.08.058
Abstract301)      PDF in ScienceDirect      

Identifying and selecting high-quality seeds is crucial for improving crop yield.  The purpose of this study was to improve the selection of crop seeds based on separating vital seeds from dead seeds, by predicting the potential germination ability of each seed, and thus improving seed quality.  The methods of oxygen consumption (Q) of seeds and the headspace-gas chromatography-ion mobility spectrometry (HS-GC-IMS) were evaluated for identifying the viability of individual seeds.  Firstly, the oxygen consumption technique showed clear differences among the values related to respiratory characteristics for seeds that were either vital or not, and the discrimination ability of final oxygen consumption (Q120) was achieved not only in sweet corn seeds but also in pepper and wheat seeds.  Besides, Qt was established as a new variable to shorten the measuring process in the Q2 (oxygen sensor) procedure, which was significantly related to the viability of individual seeds.  To minimize seed damage during measurement, the timing for viability evaluation was pinpointed at the 12, 6 and 9 h for pepper, sweet corn, and wheat seeds based on the new variables concerning oxygen consumption (i.e., Q12, Q6 and Q9, respectively).  The accuracies of viability prediction were 91.9, 97.7 and 96.2%, respectively.  Dead seeds were identified and hence discarded, leading to an enhancement in the quality of the seed lot as indicated by an increase in germination percentage, from 86.6, 90.9, and 53.8% to all at 100%.  We then used the HS-GC-IMS to determine the viability of individual sweet corn seeds, noting that corn seed has a heavier weight so the volatile gas components are more likely to be detected.  A total of 48 chromatographic peaks were identified, among which 38 target compounds were characterized, including alcohols, aldehydes, acids and esters.  However, there were no significant differences between the vital and dead seeds, due to the trace amount volatile composition differences among the individual seeds.  Furthermore, a PCA based on the signal intensities of the target volatile compounds obtained was found to lose its effectiveness, as it was unable to distinguish those two types of sweet corn seeds.  These strategies can provide a reference for the rapid detection of single seed viability.

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SLAF marker based QTL mapping of fruit-related traits reveals a major-effect candidate locus ff2.1 for flesh firmness in melon
CHEN Ke-xin, DAI Dong-yang, WANG Ling, YANG Li-min, LI Dan-dan, WANG Chao, JI Peng, SHENG Yun-yan
2023, 22 (11): 3331-3345.   DOI: 10.1016/j.jia.2023.02.014
Abstract166)      PDF in ScienceDirect      

Flesh firmness (FF) is an important and complex trait for melon breeders and consumers.  However, the genetic mechanism underlying FF is unclear.  Here, a soft fruit melon (P5) and a hard fruit melon (P10) were crossed to generate F2, and the FF and fruit-related traits were recorded for two years.  By performing quantitative trait locus (QTL) specific-locus amplified fragment (SLAF) (QTL-SLAF) sequencing and molecular marker-linkage analysis, 112 844 SLAF markers were identified, and 5 919 SNPs were used to construct a genetic linkage map with a total genetic distance of 1 356.49 cM.  Ten FF- and fruit-related QTLs were identified.  Consistent QTLs were detected for fruit length (FL) and fruit diameter (FD) in both years, and QTLs for single fruit weight (SFW) were detected on two separate chromosomes in both years.  For FF, the consistent major locus (ff2.1) was located in a 0.17-Mb candidate region on chromosome 2.  Using 429 F2 individuals derived from a cross between P5 and P10, we refined the ff2.1 locus to a 28.3-kb region harboring three functional genes.  These results provide not only a new candidate QTL for melon FF breeding but also a theoretical foundation for research on the mechanism underlying melon gene function.

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P1 of strawberry vein banding virus, a multilocalized protein, functions as a movement protein and interacts with the coat protein
RUI Peng-huan, WANG Zhan-qi, SHAN Wen-shu, XIA Wei-wei, ZHOU Xiu-hong, YANG Lian-lian, JIANG Lei, JIANG Tong
2022, 21 (4): 1071-1083.   DOI: 10.1016/S2095-3119(21)63711-5
Abstract119)      PDF in ScienceDirect      
Although the complete nucleotide sequence of strawberry vein banding virus (SVBV) has been determined and bioinformatic analysis has revealed that the SVBV genome could encode seven proteins, the precise function of each protein is unclear.  This study provided evidence that the P1 protein of SVBV (SVBV-P1) possesses the following features.  Bioinformatic and subcellular localization analyses showed that SVBV-P1 is localized in the cytoplasm and cell walls of epidermal cells in Nicotiana benthamiana, and it forms inclusion bodies associated with microtubules and the endoplasmic reticulum.  Dilution experiments demonstrated that SVBV-P1 could move from the original agro-infiltrated cells to adjacent cells in N. benthamiana leaves.  Further trans-complementation experiments demonstrated that SVBV-P1 could facilitate the intercellular movement of a movement-deficient potato virus X mutant in N. benthamiana leaves.  Finally, yeast two-hybrid and bimolecular fluorescence complementation assays revealed that SVBV-P1 could interact with the SVBV coat protein, which is a major component of Caulimovirus virions.  Results of the electrophoretic mobility shift assay indicated that SVBV-P1 lacks DNA-binding capability.  In summary, the results suggest that SVBV-P1 is probably a movement protein of SVBV, providing new insights into the function of movement proteins of the Caulimovirus genus.
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Transcriptome analysis for understanding the mechanism of dark septate endophyte S16 in promoting the growth and nitrate uptake of sweet cherry
WU Fan-lin, QU De-hui, TIAN Wei, WANG Meng-yun, CHEN Fei-yan, LI Ke-ke, SUN Ya-dong, SU Ying-hua, YANG Li-na, SU Hong-yan, WANG Lei
2021, 20 (7): 1819-1831.   DOI: 10.1016/S2095-3119(20)63355-X
Abstract169)      PDF in ScienceDirect      
Sweet cherry is one of the most popular fresh fruits in the world.  Previously, we isolated a soilborne dark septate endophyte (DSE) strain, S16, which promoted the growth of Gisela 5 sweet cherry rootstock.  However, little is known about the molecular mechanism of the effect of S16 on the growth of sweet cherry.  In this study, the physiological parameters and transcript profiles of sweet cherry roots were analyzed under S16 treatment compared with a control to elucidate the molecular mechanisms of the effect of this strain on sweet cherry growth.  After inoculation with S16, sweet cherry seedlings exhibited more vigorous growth.  Moreover, we identified 4 249 differentially expressed genes (DEGs) between S16-treated plants and the control.  Many of the DEGs are involved in pathways related to plant growth, such as cellular metabolic and plant hormone pathways.  Additionally, some genes involved in nitrate regulation were also enriched; and these genes may be involved in the regulation of nitrate uptake in plants.  Physiological index detection demonstrated that S16 could improve the nitrate assimilation of sweet cherry via NO3 transporters. This RNA-seq dataset provides comprehensive insight into the transcriptomic landscape to reveal the molecular mechanisms whereby the DSE influences the growth of sweet cherry.
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Two novel gene-specific markers at the Pik locus facilitate the application of rice blast resistant alleles in breeding
TIAN Da-gang, CHEN Zi-qiang, LIN Yan, CHEN Zai-jie, LUO Jia-mi, JI Ping-sheng, YANG Li-ming, WANG Zong-hua, WANG Feng
2021, 20 (6): 1554-1562.   DOI: 10.1016/S2095-3119(20)63272-5
Abstract153)      PDF in ScienceDirect      
Blast, a disease caused by Magnaporthe oryzae, is a major constraint for rice production worldwide.  Introgression of durable blast resistance genes into high-yielding rice cultivars has been considered a priority to control the disease.  The blast resistance Pik locus, located on chromosome 11, contains at least six important resistance genes, but these genes have not been widely employed in resistance breeding since existing markers hardly satisfy current breeding needs due to their limited scope of application.  In this study, two PCR-based markers, Pikp-Del and Pi1-In, were developed to target the specific InDel (insertion/deletion) of the Pik-p and Pi-1 genes, respectively.  The two markers precisely distinguished Pik-p, Pi-1, and the K-type alleles at the Pik locus, which is a necessary element for functional genes from rice varieties.  Results also revealed that only several old varieties contain the two genes, of which nearly half carry the K-type alleles.  Therefore, these identified varieties can serve as new gene sources for developing blast resistant rice.  The two newly developed markers will be highly useful for the use of Pik-p, Pi-1 and other resistance genes at the Pik locus in marker-assisted selection (MAS) breeding programs.
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circRNA landscape of non-pregnant endometrium during the estrus cycle in dairy goats
LIU Xiao-rui, ZHANG Lei, CUI Jiu-zeng, YANG Li-chun, HAN Jin-cheng, CHE Si-cheng, CAO Bin-yun, LI Guang, SONG Yu-xuan
2021, 20 (5): 1346-1358.   DOI: 10.1016/S2095-3119(20)63464-5
Abstract129)      PDF in ScienceDirect      
Endometrial development is a complicated process involving numerous regulatory factors.  Circular RNAs (circRNAs) have been known as a member of the naturally occurring non-coding RNA family, and are reportedly crucial for a variety of physiological processes.  This study investigated the circRNA landscape of non-pregnant endometrium of dairy goats during estrus.  Non-pregnant endometrial samples of goats at estrus day 5 (Ed5) and estrus day 15 (Ed15) were used to methodically analyze the circRNA landscape using strand-specific Ribo-Zero RNA-Seq.  A total of 2 331 differentially expressed (P<0.05) circRNAs (DEciRs) between Ed5 and Ed15 were discovered in the goat endometrium.  It was found that Nipped-B-like (NIPBL) and calcium responsive transcription factor (CARF) may participate in the development of the endometrium by decreasing (P<0.05) the levels of their circRNA-transcript forms.  Furthermore, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses of DEciR host genes (hgDEciRs) revealed that tight junctions and GTPases may be involved in endometrial development during the estrus cycle.  A total of 2 331 DEciRs were discovered in the endometrium at Ed5 and Ed15.  Based on GO and KEGG enrichment analyses, it could be inferred that tight junctions and GTPases are likely to play an important role in the development of goat endometrium during the estrus cycle.  This circRNA study greatly enhances our knowledge of global trends in the development of non-pregnant endometrium during the estrus cycle in goats; these results help us to better understand the molecular regulation of endometrial development in dairy goats.
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Analysis of phototactic responses in Spodoptera frugiperda using Helicoverpa armigera as control
LIU Ying-jie, ZHANG Dan-dan, YANG Li-yu, DONG Yong-hao, LIANG Ge-mei, Philip DONKERSLEY, REN Guang-wei, XU Peng-jun, WU Kong-ming
2021, 20 (3): 821-828.   DOI: 10.1016/S2095-3119(19)62863-7
Abstract127)      PDF in ScienceDirect      
Light traps are widely utilized to monitor and manage insect pest populations.  In late 2018, the fall armyworm (FAW), Spodoptera frugiperda, invaded China through Yunnan Province representing a huge threat to grain production.  To estimate the efficiency of light traps on FAW moths, we first identified the opsin genes from FAW by using the transcriptome.  Phylogenetic analysis indicated that the four opsins of FAW were clustered with those of other Noctuidae species.  The expressed levels of opsins in S. frugiperda were lower than in Helicoverpa armigera, suggesting a different phototactic response between the two species.  Then, we determined the phototactic behavior of FAW using H. armigera as a control, which is widely monitored and managed using light traps in China.  Our results indicated that the two moths species showed significantly different phototactic behavior and both female and male FAW displayed faster flight-to-light speed than H. armigera.  This may be due to a faster flight capacity in FAW compared to H. armigera.  However, the capture rate of both female and male of S. frugiperda was significantly lower than that of H. armigera, which was consistent with the expression levels of opsins.  These results support the positive phototaxis of S. frugiperda moths and suggest light traps could be used for monitoring and managing the pests, but with a lower efficiency than H. armigera.
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What are the differences in yield formation among two cucumber (Cucumis sativus L.) cultivars and their F1 hybrid?
WANG Xiu-juan, KANG Meng-zhen, FAN Xing-rong, YANG Li-li, ZHANG Bao-gui, HUANG San-wen, Philippe DE REFFYE, WANG Fei-yue
2020, 19 (7): 1789-1801.   DOI: 10.1016/S2095-3119(20)63218-X
Abstract117)      PDF in ScienceDirect      
To elucidate the mechanisms underlying the differences in yield formation among two parents (P1 and P2) and their F1 hybrid of cucumber, biomass production and whole source–sink dynamics were analyzed using a functional–structural plant model (FSPM) that simulates both the number and size of individual organs.  Observations of plant development and organ biomass were recorded throughout the growth periods of the plants.  The GreenLab Model was used to analyze the differences in fruit setting, organ expansion, biomass production and biomass allocation.  The source–sink parameters were estimated from the experimental measurements.  Moreover, a particle swarm optimization algorithm (PSO) was applied to analyze whether the fruit setting is related to the source–sink ratio.  The results showed that the internal source–sink ratio increased in the vegetative stage and reached a peak until the first fruit setting.  The high yield of hybrid F1 is the compound result of both fruit setting and the internal source–sink ratio.  The optimization results also revealed that the incremental changes in fruit weight result from the increases in sink strength and proportion of plant biomass allocation for fruits.  The model-aided analysis revealed that heterosis is a result of a delicate compromise between fruit setting and fruit sink strength.  The organ-level model may provide a computational approach to define the target of breeding by combination with a genetic model.
 
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Effects of subsoiling depth, period interval and combined tillage practice on soil properties and yield in the Huang-Huai-Hai Plain, China
WANG Yun-xia, CHEN Shu-ping, ZHANG Dong-xing, YANG Li, CUI Tao, JING Hui-rong, LI Yu-huan
2020, 19 (6): 1596-1608.   DOI: 10.1016/S2095-3119(19)62681-X
Abstract160)      PDF in ScienceDirect      
Compaction layers are widely distributed in the Huang-Huai-Hai Plain, China, which restrict root growth and reduce yields.  The adoption of subsoiling has been recommended to disrupt compacted soil layers and create a reasonable soil structure for crop development.  In this paper, the effects of subsoiling depth (30, 35 and 40 cm), period interval (2 or 3 years) and combined pre-sowing tillage practice (rotary cultivation or ploughing) on soil condition improvement was studied on a tidal soil in the Huang-Huai-Hai Plain.  Seven tillage patterns were designed by combining different subsoiling depths, period intervals and pre-sowing.  The evaluation indicators for soil condition improvement were as follows: thickness of the plough layer and hard pan, soil bulk density, cone index, soil three-phase R values, alkali nitrogen content, crop yield, and economic benefits.  The results showed that subsoiling can significantly improve the soil structure and physical properties.  In all subsoiling treatments, the depth of 35 or 40 cm at a 2-year interval was the most significant.  The thickness of the plough layer increased from 13.67 cm before the test to 21.54–23.45 cm in 2018.  The thickness of the hard pan decreased from 17.68 cm before the test to 12.09–12.76 cm in 2018, a decrease of about 40.07%.  However, the subsoiling combined pre-sowing tillage practice, that is, rotary cultivation or ploughing, was not significant for soil structure and physical properties.  For all subsoiling treatments, the soil bulk density, cone index and soil three-phase R values of the 15–25 cm soil layer were significantly lower compared to single rotary cultivation.  Subsoiling was observed to increase the soil alkaline nitrogen and water contents.  The tillage patterns that had subsoiling at the depth of 35–40 cm at a 2-year interval combined with rotary cultivation had the highest alkali nitrogen and water contents, which increased by 31.08–34.23% compared with that of the single rotary cultivation.  Subsoiling can significantly increase the yield both of wheat and corn, as well as the economic benefits.  The treatment of subsoiling at the depth of 35 cm at an interval of 2 years combined with rotary cultivation had the highest annual yield and economic benefits.  For this treatment, the annual yield and economic benefits increased by 14.55 and 62.87% in 2018, respectively.  In conclusion, the tillage patterns that involved subsoiling at a depth of 35 cm at a 2-year interval along with rotary cultivation are suitable for the Huang-Huai-Hai Plain.
 
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Molecular detection of the powdery mildew resistance genes in winter wheats DH51302 and Shimai 26
QU Yun-feng, WU Pei-pei, HU Jing-huang, CHEN Yong-xing, SHI Zhan-liang, QIU Dan, LI Ya-hui, ZHANG Hong-jun, ZHOU Yang, YANG Li, LIU Hong-wei, ZHU Tong-quan, LIU Zhi-yong, ZHANG Yan-ming, LI Hong-jie
2020, 19 (4): 931-940.   DOI: 10.1016/S2095-3119(19)62644-4
Abstract122)      PDF in ScienceDirect      
Resistance to powdery mildew is an important trait of interest in many wheat breeding programs.  The information on genes conferring resistance to powdery mildew in wheat cultivars is useful in parental selection.  Winter wheat breeding line DH51302 derived from Liangxing 99 and cultivar Shimai 26 derived from Jimai 22 showed identical infection patterns against 13 isolates of Blumeria graminis f. sp. tritici (Bgt) that causes wheat powdery mildew.  DH51302 and Shimai 26 were crossed to a powdery mildew susceptible cultivar Zhongzuo 9504 and the F2:3 families were used in molecular localization of the resistance genes.  Fourteen polymorphic markers, which were linked to Pm52 from Liangxing 99, were used to establish the genetic linkage maps for the resistance genes PmDH51302 and PmSM26 in DH51302 and Shimai 26, respectively.  These genes were placed in the same genetic interval where Pm52 resides.  Analysis of gene-linked molecular markers indicated that PmDH51302 and PmSM26 differed from other powdery mildew resistance genes on chromosome arm 2BL, such as Pm6, Pm33, Pm51, MlZec1, MlAB10, and Pm64.  Based on the results of reaction patterns to different Bgt isolates and molecular marker localization, together with the pedigree information, DH51302 and Shimai 26 carried the same gene, Pm52, which confers their resistance to powdery mildew.
 
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Genetic progress in stem lodging resistance of the dominant wheat cultivars adapted to Yellow-Huai River Valleys Winter Wheat Zone in China since 1964
ZHANG Hong-jun, LI Teng, LIU Hong-wei, MAI Chun-yan, YU Guang-jun, LI Hui-li, YU Li-qiang, MENG Ling-zhi, JIAN Da-wei, YANG Li, LI Hong-jie, ZHOU Yang
2020, 19 (2): 438-448.   DOI: 10.1016/S2095-3119(19)62627-4
Abstract144)           
Analysis of genetic progress for lodging-related traits provides important information for further improvement of lodging resistance.  Forty winter wheat cultivars widely grown in the Yellow-Huai River Valleys Winter Wheat Zone (YHWZ) of China during the period of 1964–2015 were evaluated for several lodging-related traits in three cropping seasons.  Plant height, height at center of gravity, length of the basal second internode, and lodging index decreased significantly in this period, and the average annual genetic gains for these traits were –0.50 cm or –0.62%, –0.27 cm or –0.60%, –0.06 cm or –0.63%, and –0.01 or –0.94%, respectively.  Different from other traits, stem strength showed a significant increasing trend with the breeding period, and the annual genetic gains were 0.03 N or 0.05%.  Correlation analysis showed that lodging index was positively correlated with plant height, height at center of gravity, and length of the basal second internode, but negatively correlated with stem strength.  Meanwhile, significantly positive correlations were observed between plant height, height at center of gravity, and length of the basal first and second internodes.  By comparison with the wild types, dwarfing genes had significant effects on all lodging-related traits studied except for length of the basal first internode and stem strength.  Principle component analysis demonstrated that plant height and stem strength were the most important factors influencing lodging resistance.  Clustering analysis based on the first two principle components further indicated the targets of wheat lodging-resistant breeding have changed from reducing plant height to strengthening stem strength over the breeding periods.  This study indicates that the increase of stem strength is vital to improve lodging resistance in this region under the high-yielding condition when plant height is in an optimal range.
 
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Domestication and breeding changed tomato fruit transcriptome 
LIU Dan, YANG Liang, ZHANG Jin-zhe, ZHU Guang-tao, Lü Hong-jun, Lü Ya-qing, WANG Yan-ling, CAO Xue, SUN Tian-shu, HUANG San-wen, WU Yao-yao
2020, 19 (1): 120-132.   DOI: 10.1016/S2095-3119(19)62824-8
Abstract250)      PDF in ScienceDirect      
Tomato (Solanum lycopersicum) stress resistance and fruit total soluble solid (TSS) content have changed dramatically during selective breeding, and transcriptome variation has played a critical role in this rewiring.  However, the single tomato reference genome impedes characterization of whole-transcriptome variation during domestication and breeding at the population level.  Here, we constructed a pan-transcriptome of orange-stage tomato fruit, and investigated global expression presence/absence variation (ePAV) and differentially expressed genes (DEGs) based on RNA sequencing (RNA-seq) data from 399 tomato accessions.  A total of 7 181 genes absent from the reference genome were identified, 6 122 of which were ePAV genes during tomato domestication and breeding including resistance genes such as late blight resistance gene PIM_DN29746_c0_g3_i1 and peroxidase P7-like gene PIM_DN30274_c0_g2_i1.  In addition, 3 629 genes were significantly differentially expressed during tomato selection, among which 19 genes were associated with the reduced fruit TSS content of modern tomato cultivars, including LIN5, TIV1, and seven novel sugar transporter genes.  Our results indicate that natural and artificial selection greatly shaped the tomato transcriptome, thereby altering the fruit TSS content and resistance to abiotic and biotic stresses.
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Selection for high quality pepper seeds by machine vision and classifiers
TU Ke-ling, LI Lin-juan, YANG Li-ming, WANG Jian-hua, SUN Qun
2018, 17 (09): 1999-2006.   DOI: 10.1016/S2095-3119(18)62031-3
Abstract425)      PDF in ScienceDirect      
This research aimed to improve selection of pepper seeds for separating high-quality seeds from low-quality seeds. Past research has shown that seed vigor is significantly related to the seed color and size, thus several physical features were identified as candidate predictors of high seed quality. Image recognition software was used to automate recognition of seed feature quality using 400 kernels of pepper cultivar 101. In addition, binary logistic regression and a neural network were applied to determine models with high predictive value of seed germination. Single-kernel germination tests were conducted to validate the predictive value of the identified features. The best predictors of seed vigor were determined by the highest correlation observed between the physical features and the subsequent fresh weight of seedlings that germinated from the 400 seeds. Correlation analysis showed that fresh weight was significantly positively correlated with eight physical features: three color features (R, a*, brightness), width, length, projected area, and single-kernel density, and weight. In contrast, fresh weight significantly negatively correlated with the feature of hue. In analyses of two of the highest correlating single features, germination percentage increased from 59.3 to 71.8% when a*≥3, and selection rate peaked at 57.8%. Germination percentage increased from 59.3 to 79.4%, and the selection rate reached 76.8%, when single-kernel weight ≥0.0064 g. The most effective model was based on a multilayer perceptron (MLP) neural network, consisting of 15 physical traits as variables, and a stability calculated as 99.4%. Germination percentage in a calibration set of seeds was 79.1% and the selection rate was 90.0%. These results indicated that the model was effective in predicting seed germination based on physical features and could be used as a guide for quality control in seed selection. Automated systems based on machine vision and model classifiers can contribute to reducing the costs and labor required in the selection of pepper seeds.
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Accuracy comparison of dry matter intake prediction models evaluated by a feeding trial of lactating dairy cows fed two total mixed rations with different forage source
PAN Xiao-hua, YANG Liang, Yves Beckers, XIONG Ben-hai, JIANG Lin-shu
2017, 16 (04): 921-929.   DOI: 10.1016/S2095-3119(16)61483-1
Abstract772)      PDF in ScienceDirect      
Dry matter intake (DMI) prediction models of NRC (2001), Fox et al. (2004) and Fuentes-Pila et al. (2003) were targeted in the present study, and the objective was to evaluate their prediction accuracy with feeding trial data of 32 lactating Holstein cows fed two total mixed rations with different forage source.  Thirty-two cows were randomly assigned to one of two total mixed ration groups: a ration containing a mixed forage (MF) of 3.7% Chinese wildrye, 28.4% alfalfa hay and 26.5% corn silage diet and another ration containing 33.8% corn stover (CS) as unique forage source.  The actual DMI was greater in MF group than in CS group (P=0.064).  The NRC model to predict DMI resulted in the lowest root mean square prediction error for both MF and CS groups (1.09 kg d–1 vs. 1.28 kg d–1) and the highest accuracy and precision based on concordance correlation coefficient for both MF and CS diet (0.89 vs. 0.87).  Except the NRC model, the other two models presented mean and linear biases in both MF and CS diets when prediction residuals were plotted against predicted DMI values (P<0.001).  The DMI variation in MF was caused by week of lactation (55.6%), milk yield (13.9%), milk fat percentage (7.1%) and dietary neutral detergent fiber (13.3%), while the variation in CS was caused by week of lactation (50.9%), live body weight (28.2%), milk yield (8.4%), milk fat percentage (5.2%) and dietary neutral detergent fibre (3.8%).  In a brief, the NRC model to predict DMI is comparatively acceptable for lactating dairy cows fed two total mixed rations with different forage source.
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The renewability and quality of shallow groundwater in Sanjiang and Songnen Plain, Northeast China
ZHANG Bing, SONG Xian-fang, ZHANG Ying-hua, HAN Dong-mei, TANG Chang-yuan, YANG Li-hu, WANG Zhong-liang
2017, 16 (01): 229-238.   DOI: 10.1016/S2095-3119(16)61349-7
Abstract1085)      PDF in ScienceDirect      
Groundwater is a key component for water resources in Sanjiang and Songnen Plain, an important agriculture basement in China.  The quality and the renewability of irrigation groundwater are essential for the stock raising and agricultural production.  Shallow groundwater was sampled and analyzed for various variables.  The salinity sodium concentration and bicarbonate hazard, were examined with regard to the United States Department of Agriculture (USDA) irrigation water standards.  The concentration of chlorofluorocarbons (CFCs) was determined to analyze the age of groundwater.  Most groundwater samples labeled as excellent to good for irrigation with low salinity hazard or medium salinity hazard.  Four groundwater samples were good and suspected for irrigation with high salinity hazard.  Generally groundwater in Sanjiang Plain was younger than the groundwater in Songnen Plain.  Meanwhile, groundwater nearby river is younger than the groundwater further away inside the watershed.  The mean age of groundwater in Sanjiang Plain is in average of 44.1, 47.9 and 32.8 years by CFC-11 (CCl3F), CFC-12 (CCl2F2) and CFC-113 (C2Cl3F3),  respectively.  The mean ages of groundwater in Songnen Plain is in average of 46.1, 53.4, and 40.7 years by CFC-11, CFC-12 and CFC-113, respectively.  Thus, groundwater nearby rivers could be directly exploited as irrigation water.  Partial groundwater has to be processed to lower the salt concentration rather than directly utilized as irrigation water in Songnen Plain.  Both water quality and renewability should be put in mind for sustainable agricultural development and water resources management.
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Effects of CO2 enrichment and spikelet removal on rice quality under open-air field conditions
JING Li-quan, WU Yan-zhen, ZHUANG Shi-teng, WANG Yun-xia, ZHU Jian-guo, WANG Yu-long, YANG Lian-xin
2016, 15 (9): 2012-2022.   DOI: 10.1016/S2095-3119(15)61245-X
Abstract1368)      PDF in ScienceDirect      
    The increase of atmospheric carbon dioxide (CO2) concentration adversely affect several quality traits of rice grains, but the biochemical mechanism remains unclear. The objectives of this study were to determine how changes in the source-sink relationship affected rice quality. Source-sink manipulation was achieved by free-air CO2 enrichment from tillering to maturity and partial removal of spikelet at anthesis using a japonica rice cultivar Wuyunjing 23. Enrichment with CO2 decreased the head rice percentage and protein concentration of milled rice, but increased the grain chalkiness. In contrast, spikelet removal resulted in a dramatic increase in the head rice percentage and protein concentration, and much less grain chalkiness. Neither CO2 enrichment nor spikelet removal affected the starch content, but the distribution of starch granule size showed distinct treatment effects. On average, spikelet removal decreased the percentage of starch granules of diameter >10 and 5–10 μm by 23.6 and 5.6%, respectively, and increased those with a diameter of 2–5 and <2 μm by 4.6 and 3.3%, respectively. In contrast, CO2 elevation showed an opposite response: increasing the proportion of large starch granules (>5 μm) and decreasing that of <5 μm. The starch pasting properties were affected by spikelet removal much more than by CO2 elevation. These results indicated that the protein concentration and starch granule size played a role in chalkiness formation under these experimental conditions.
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