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Increasing nitrogen absorption and assimilation ability under mixed NO3 and NH4+ supply is a driver to promote growth of maize seedlings
WANG Peng, WANG Cheng-dong, WANG Xiao-lin, WU Yuan-hua, ZHANG Yan, SUN Yan-guo, SHI Yi, MI Guo-hua
2023, 22 (6): 1896-1908.   DOI: 10.1016/j.jia.2023.04.037
Abstract202)      PDF in ScienceDirect      

Compared with sole nitrate (NO3) or sole ammonium (NH4+) supply, mixed nitrogen (N) supply may promote growth of maize seedlings.  Previous study suggested that mixed N supply not only increased photosynthesis rate, but also enhanced leaf growth by increasing auxin synthesis to build a large sink for C and N utilization.  However, whether this process depends on N absorption is unknown.  Here, maize seedlings were grown hydroponically with three N forms (NO3 only, 75/25 NO3/NH4+ and NH4+ only).  The study results suggested that maize growth rate and N content of shoots under mixed N supply was little different to that under sole NO3 supply at 0–3 d, but was higher than under sole NO3 supply at 6–9 d.  15N influx rate under mixed N supply was greater than under sole NO3 or NH4+ supply at 6–9 d, although NO3 and NH4+ influx under mixed N supply were reduced compared to sole NO3 and NH4+ supply, respectively.  qRT-PCR determination suggested that the increased N absorption under mixed N supply may be related to the higher expression of NO3 transporters in roots, such as ZmNRT1.1A, ZmNRT1.1B, ZmNRT1.1C, ZmNRT1.2 and ZmNRT1.3, or NH4+ absorption transporters, such as ZmAMT1.1A, especially the latter.  Furthermore, plants had higher nitrate reductase (NR) glutamine synthase (GS) activity and amino acid content under mixed N supply than when under sole NO3 supply.  The experiments with inhibitors of NR reductase and GS synthase further confirmed that N assimilation ability under mixed N supply was necessary to promote maize growth, especially for the reduction of NO3 by NR reductase.  This research suggested that the increased processes of NO3 and NH4+ assimilation by improving N-absorption ability of roots under mixed N supply may be the main driving force to increase maize growth.


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Inversion tillage with straw incorporation affects the patterns of soil microbial co-occurrence and multi-nutrient cycling in a Hapli-Udic Cambisol
CHEN Xu, HAN Xiao-zeng, WANG Xiao-hui, GUO Zhen-xi, YAN Jun, LU Xin-chun, ZOU Wen-xiu
2023, 22 (5): 1546-1559.   DOI: 10.1016/j.jia.2022.12.011
Abstract188)      PDF in ScienceDirect      
Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process, but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage (CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage (SCT, tillage to a depth of 15 cm), inversion tillage (IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage (SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil. In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.
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Vacuolar processing enzyme positively modulates plant resistance and cell death in response to Phytophthora parasitica infection
GAO Xian-xian, TANG Ya-ling, SHI Qing-yao, WEI Yu-shu, WANG Xiao-xue, SHAN Wei-xing, QIANG Xiao-yu
2023, 22 (5): 1424-1433.   DOI: 10.1016/j.jia.2022.08.124
Abstract211)      PDF in ScienceDirect      

Oomycete, particularly Phytophthora species, causes the most devastating crop diseases, such as potato late blight, and threatens the sustainable crop production worldwide.  Our previous studies identified Resistance to Phytophthora parasitica 1 (RTP1) as a negative regulator of Arabidopsis resistance to multiple biotrophic pathogens and RTP1 loss-of-function plants displayed rapid cell death and reactive oxygen species (ROS) production during early colonization of Pparasitica.  In this study, we aim to decipher the mechanism of RTP1-mediated cell death, and identify a member of vaculoar processing enzymes (VPEs), γVPE, playing a role in rtp1-mediated resistance to Pparasitica and cell death occurrence.  Our results showed up-regulation of the expression of γVPE as well as increased VPE/caspase 1-like protease activity in Pparasitica-infected rtp1 mutant plants.  Besides, we found that the VPE/caspase 1-like protease activity was required for the cell death occurrence in Arabidopsis plants during the infection of Pparasitica as well as rtp1-mediated resistance to Pparasitica.  Further pathogenicity assays on either Arabidopsis γvpe mutant plants or leaves of Nicotiana benthamiana with transient overexpression of γVPE demonstrated γVPE could positively affect plant resistance to Pparasitica.  Together, our studies suggest that γVPE might function as an important regulator of plant defense and cell death occurrence in response to Pparasitica infection, and VPE/caspase 1-like protease activity is required for rtp1-mediated resistance to Pparasitica.

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A 314-bp SINE Insertion in the ZNF2 promoter region may act as a repressor related to regulation of fat deposition in pigs
GU Hao, DU Zhan-yu, Eduard MURANI, Enrico D’ALESSANDRO, CHEN Cai, WANG Xiao-yan, MAO Jiu-de, Klaus WIMMERS, SONG Cheng-yi
2023, 22 (2): 526-536.   DOI: 10.1016/j.jia.2022.08.128
Abstract336)      PDF in ScienceDirect      

Retrotransposons, a type of DNA fragment that can mobilize itself on genome, can generate genetic variations and develop for molecular markers based on the insertion polymorphism.  Zinc finger proteins (ZNFs) are among the most abundant proteins in eukaryotic animals, and their functions are extraordinarily diverse and particularly important in gene regulation.  In the current study, bioinformatic prediction was performed to screen for retrotransposon insertion polymorphisms (RIPs) in six ZNF genes (ZNF2, ZNF3, ZNF7, ZNF8, ZNF10 and ZNF12).  Six RIPs in these ZNFs, including one short interspersed nuclear element (SINE) RIP in intron 1 and one long interspersed nuclear element 1 (L1) RIP in intron 3 of ZNF2, one SINE RIP in 5´ flanking region and one SINE RIP in intron 2 of ZNF3, one SINE RIP in 3´ UTR of ZNF7 and one L1 RIP in intron 2 of ZNF12, were discovered and their presence was confirmed by PCR.  The impact of the SINE RIP in the first intron of ZNF2, which is close to the core promoter of ZNF2, on the gene activity was investigated by dual-luciferase assay in three cell lines.  Our results showed that the SINE insertion in the intron 1 of ZNF2 repressed the core promoter activity extremely significantly (P<0.01) in cervical cancer cells and porcine primary embryonic fibroblasts (HeLa and PEF), thus SINE may act as a repressor.  This SINE RIP also significantly (P<0.05) affected the corrected back fat thickness in Yorkshire pigs.  The corrected back fat thickness of individuals with SINE insertion in the first intron of ZNF2 was significantly (P<0.05) higher than that of individuals without SINE insertion.  In summary, our data suggested that RIPs play important roles in the genetic variations of these ZNF genes and SINE RIP in the intron 1 of ZNF2 may provide a useful molecular marker for the screening of fat deposition in the pig breeding.

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Identification of tolerance to high density and lodging in short petiolate germplasm M657 and the effect of density on yield-related phenotypes of soybean
GAO Hua-wei, YANG Meng-yuan, YAN Long, HU Xian-zhong, HONG Hui-long, ZHANG Xiang, SUN Ru-jian, WANG Hao-rang, WANG Xiao-bo, LIU Li-ke, ZHANG Shu-zhen, QIU Li-juan
2023, 22 (2): 434-446.   DOI: 10.1016/j.jia.2022.08.047
Abstract257)      PDF in ScienceDirect      

Soybean yield has been increased through high planting density, but investigating plant height and petiole traits to select for compact architecture, lodging resistance, and high yield varieties is an underexplored avenue to improve yield.  We compared the relationship between yield-related traits, lodging resistance, and petiole-associated phenotypes in the short petiole germplasm M657 with three control accessions over 2017-2018 in four locations of the Huang-Huai region.  The results showed M657 exhibited stable and high tolerance to high planting density and resistance to lodging, especially at the highest density (8×105 plants ha-1).  Regression analysis showed that shorter petiole length was significantly associated with increased lodging resistance.  Yield analysis showed that M657 achieved higher yields under higher densities, especially in the north Huang-Huai region.  There are markedly different responses to intra- and inter-row spacing designs among varieties in both lodging and yield related to location and density.  Lodging was positively correlated with planting density, plant height, petiole length, and number of effective branches, and negatively correlated with stem diameter, seed number per plant, and seed weight per plant.  The yield of soybean was increased by appropriately increasing planting density on the basis of current soybean varieties in the Huang-Huai region.  This study provides a valuable new germplasm resource for introgression of compact architecture traits amenable to high yield in high density planting systems and establishes a high-yield model of soybean in the Huang-Huai region.


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The nitrate-responsive transcription factor MdNLP7 regulates callus formation by modulating auxin response
LI Tong, FENG Zi-quan, ZHANG Ting-ting, YOU Chun-xiang, ZHOU Chao, WANG Xiao-Fei
2023, 22 (10): 3022-3033.   DOI: 10.1016/j.jia.2023.08.007
Abstract194)      PDF in ScienceDirect      

Under appropriate culture conditions, plant cells can regenerate new organs or even whole plants.  De novo organ regeneration is an excellent biological system, which usually requires additional growth regulators, including auxin and cytokinin.  Nitrate is an essential nutrient element for plant vegetative and reproductive development.  It has been reported that nitrate is involved in auxin biosynthesis and transport throughout the growth and development of plants.  In this study, we demonstrated that the ectopic expression of the MdNLP7 transcription factor in Arabidopsis could regulate the regeneration of root explants.  MdNLP7 mainly participated in the regulation of callus formation, starting with pericycle cell division, and mainly affected auxin distribution and accumulation in the regulation process.  Moreover, MdNLP7 upregulated the expression of genes related to auxin biosynthesis and transport in the callus formation stage.  The results demonstrated that MdNLP7 may play a role in the nitrate-modulated regeneration of root explants.  Moreover, the results revealed that nitrate–auxin crosstalk is required for de novo callus initiation and clarified the mechanisms of organogenesis.

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BnaSD.C3 is a novel major quantitative trait locus affecting semi-dwarf architecture in Brassica napus L.
WANG Xiao-dong, CAI Ying, PANG Cheng-ke, ZHAO Xiao-zhen, SHI Rui, LIU Hong-fang, CHEN Feng, ZHANG Wei, FU San-xiong, HU Mao-long, HUA Wei, ZHENG Ming, ZHANG Jie-fu
2023, 22 (10): 2981-2992.   DOI: 10.1016/j.jia.2023.02.017
Abstract217)      PDF in ScienceDirect      

Plant height is a key plant architectural trait that affects the seed yield, harvest index and lodging resistance in Brassica napus L., although the genetic mechanisms affecting plant height remain unclear.  Here, a semi-dwarf mutant, df34, was obtained by ethyl methanesulphonate-induced mutagenesis.  Genetic analysis showed that the semi-dwarf phenotype is controlled by one semi-dominant gene, which was located on chromosome C03 using a bulked segregant analysis coupled with whole-genome sequencing, and this gene was named BnaSD.C3.  Then BnaSD.C3 was fine-mapped to a 297.35-kb segment of the “Darmor-bzh” genome, but there was no potential candidate gene for the semi-dwarf trait underlying this interval.  Furthermore, the interval was aligned to the Zhongshuang 11 reference genome.  Finally, combining structural variation analysis, transcriptome sequencing, phytohormone analyses and gene annotation information, BnaC03G0466900ZS and BnaC03G0478900ZS were determined to be the most likely candidate genes affecting the plant height of df34.  This study provides a novel major locus for breeding and new insights into the genetic architecture of plant height in Bnapus

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PpMAPK6 regulates peach bud endodormancy release through interactions with PpDAM6

ZHANG Yu-zheng, XU Chen, LU Wen-li, WANG Xiao-zhe, WANG Ning, MENG Xiang-guang, FANG Yu-hui, TAN Qiu-ping, CHEN Xiu-de, FU Xi-ling, LI Ling
2023, 22 (1): 139-148.   DOI: 10.1016/j.jia.2022.09.010
Abstract205)      PDF in ScienceDirect      

The MADS-box (DAM) gene PpDAM6, which is related to dormancy, plays a key role in bud endodormancy release, and the expression of PpDAM6 decreases during endodormancy release.  However, the interaction network that governs its regulation of the endodormancy release of flower buds in peach remains unclear.  In this study, we used yeast two-hybrid (Y2H) assays to identify a mitogen-activated protein kinase, PpMAPK6, that interacts with PpDAM6 in a peach dormancy-associated SSHcDNA library.  PpMAPK6 is primarily located in the nucleus, and Y2H and bimolecular fluorescence complementation (BiFC) assays verified that PpMAPK6 interacts with PpDAM6 by binding to the MADS-box domain of PpDAM6.  Quantitative real-time PCR (qRT-PCR) analysis showed that the expression of PpMAPK6 was opposite that of PpDAM6 in the endodormancy release of three cultivars with different chilling requirements (Prunus persica ‘Chunjie’, Prunus persica var. nectarina ‘Zhongyou 5’, Prunus persica ‘Qingzhou peach’).  In addition, abscisic acid (ABA) inhibited the expression of PpMAPK6 and promoted the expression of PpDAM6 in flower buds.  The results indicated that PpMAPK6 might phosphorylate PpDAM6 to accelerate its degradation by interacting with PpDAM6.  The expression of PpMAPK6 increased with decreasing ABA content during endodormancy release in peach flower buds, which in turn decreased the expression of PpDAM6 and promoted endodormancy release.

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TaABI19 positively regulates grain development in wheat
LIU Yun-chuan, WANG Xiao-lu, HAO Chen-yang, IRSHAD Ahsan, LI Tian, LIU Hong-xia, HOU Jian, ZHANG Xue-yong
2023, 22 (1): 41-51.   DOI: 10.1016/j.jia.2022.08.049
Abstract274)      PDF in ScienceDirect      
Starch is the most important component in endosperm, and its synthesis is regulated by multiple transcription factors (TFs) in cereals. However, whether the functions of these TFs are conserved or not among cereals unclear yet. Here, we cloned a B3 family TF, named as TaABI19 based on its orthologous in maize (Zea mays L.). Alignment of DNA and protein showed that ABI19 was conserved in maize and wheat (Triticum aestivum L.). We found that TaABI19 was highly expressed in young spike and developing grains and encoded a nucleus-localized transcriptional activator in wheat. The taabi19-b1 null mutants obtained by EMS performed down-regulation of starch synthesis, shorter grain length and lower thousand grain weight (TGW). Furthermore, we provided TaABI19 could bind to the promoters of TaPBF homology genes and enhance their expression. Haplotype association showed that TaABI19-B1 was significantly associated with TGW. We found that Hap2 and Hap3 were favored and underwent positive selection in China wheat breeding. Less than fifty percent in the modern cultivars conveying favored haplotypes indicates TaABI19 still can be considered as target loci for marker-assisted selection breeding to increase TGW in China.
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Less hairy leaf 1, an RNaseH-like protein, regulates trichome formation in rice through auxin
CHEN Hong-yan, ZHU Zhu, WANG Xiao-wen, LI Yang-yang, HU Dan-ling, ZHANG Xue-fei, JIA Lu-qi, CUI Zhi-bo, SANG Xian-chun
2023, 22 (1): 31-40.   DOI: 10.1016/j.jia.2022.08.101
Abstract494)      PDF in ScienceDirect      
The trichomes of rice leaves are formed by the differentiation and development of epidermal cells.  Plant trichomes play an important role in stress resistance and protection against direct ultraviolet irradiation.  However, the development of rice trichomes remains poorly understood.  In this study, we conducted ethylmethane sulfonate (EMS)-mediated mutagenesis on the wild-type (WT) indica rice ‘Xida 1B’.  Phenotypic analysis led to the screening of a mutant that is defective in trichome development, designated lhl1 (less hairy leaf 1).  We performed map-based cloning and localized the mutated gene to the 70-kb interval between the molecular markers V-9 and V-10 on chromosome 2.  The locus LOC_Os02g25230 was identified as the candidate gene by sequencing.  We constructed RNA interference (LHL1-RNAi) and overexpression lines (LHL1-OE) to verity the candidate gene.  The leaves of the LHL1-RNAi lines showed the same trichome developmental defects as the lhl1 mutant, whereas the trichome morphology on the leaf surface of the LHL1-OE lines was similar to that of the WT, although the number of trichomes was significantly higher.  Quantitative real-time PCR (RT-qPCR) analysis revealed that the expression levels of auxin-related genes and positive regulators of trichome development in the lhl1 mutant were down-regulated compared with the WT.  Hormone response analysis revealed that LHL1 expression was affected by auxin.  The results indicate that the influence of LHL1 on trichome development in rice leaves may be associated with an auxin pathway.
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Maizelegume intercropping promote N uptake through changing the root spatial distribution, legume nodulation capacity, and soil N availability
ZHENG Ben-chuan, ZHOU Ying, CHEN Ping, ZHANG Xiao-na, DU Qing, YANG Huan, WANG Xiao-chun, YANG Feng, XIAO Te, LI Long, YANG Wen-yu, YONG Tai-wen
2022, 21 (6): 1755-1771.   DOI: 10.1016/S2095-3119(21)63730-9
Abstract188)      PDF in ScienceDirect      
Legume cultivars affect N uptake, component crop growth, and soil physical and chemical characteristics in maize–legume intercropping systems.  However, how belowground interactions mediate root growth, N fixation, and nodulation of different legumes to affect N uptake is still unclear.  Hence, a two-year experiment was conducted with five planting patterns, i.e., maize–soybean strip intercropping (IMS), maize–peanut strip intercropping (IMP), and corresponding monocultures (monoculture maize (MM), monoculture soybean (MS), and monoculture peanut (MP)), and two N application rates, i.e., no N fertilizer (N–) and conventional N fertilizer (N+), to examine relationships between N uptake and root distribution of crops, legume nodulation and soil N availability.  Results showed that the averaged N uptake per unit area of intercrops was significantly lower than the corresponding monocultures.  Compared with the monoculture system, the N uptake of the intercropping systems increased by 31.7–45.4% in IMS and by 7.4–12.2% in IMP, respectively.  The N uptake per plant of intercropped maize and soybean significantly increased by 61.6 and 31.8%, and that of intercropped peanuts significantly decreased by 46.6% compared with the corresponding monocultures.  Maize and soybean showed asymmetrical distribution of roots in strip intercropping systems.  The root length density (RLD) and root surface area density (RSAD) of intercropped maize and soybean were significantly greater than that of the corresponding monocultures.  The roots of intercropped peanuts were confined, which resulted in decreased RLD and RSAD compared with the monoculture.  The nodule number and nodule fresh weight of soybean were significantly greater in IMS than in MS, and those of peanut were significantly lower in IMP than in MP.  The soil protease, urease, and nitrate reductase activities of maize and soybean were significantly greater in IMS and IMP than in the corresponding monoculture, while the enzyme activities of peanut were significantly lower in IMP than in MP.  The soil available N of maize and soybean was significantly greater increased in IMS and IMP than in the corresponding monocultures, while that of IMP was significantly lower than in MP.  In summary, the IMS system was more beneficial to N uptake than the IMP system.  The intercropping of maize and legumes can promote the N uptake of maize, thus reducing the need for N application and improving agricultural sustainability.

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PbPH5, an H+ P-ATPase on the tonoplast, is related to malic acid accumulation in pear fruit
SONG Jun-xing, CHEN Ying-can, LU Zhao-hui, ZHAO Guang-ping, WANG Xiao-li, ZHAI Rui, WANG Zhi-gang, YANG Cheng-quan, XU Ling-fei
2022, 21 (6): 1645-1657.   DOI: 10.1016/S2095-3119(21)63790-5
Abstract203)      PDF in ScienceDirect      

Organic acids are one of the most important factors influencing fruit flavors. The predominant organic acid in most pear cultivars is malic acid, but the mechanism controlling its accumulation remains unclear. In this study, by comparing gene expression levels and organic acid content, we revealed that the expression of PbPH5, which encodes a P3A-ATPase, is highly correlated with malic acid accumulation in different pear species, with correlation coefficients of 0.932**, 0.656*, 0.900**, and 0.518* (*, P<0.05 or **, P<0.01) in Pyrus bretschneideri Rehd., P. communis Linn., P. pyrifolia Nakai., and P. ussuriensis Maxim., respectively. Moreover, the overexpression of PbPH5 in pear significantly increased the malic acid content. In contrast, silencing PbPH5 via RNA interference significantly decreased its transcript level and the pear fruit malic acid content. A subcellular localization analysis indicated that PbPH5 is located in the tonoplast. Additionally, a phylogenetic analysis proved that PbPH5 is a PH5 homolog gene that is clustered with Petunia hybrida, Malus domestica, and Citrus reticulata genes. Considered together, these findings suggest PbPH5 is a functionally conserved gene. Furthermore, the accumulation of malic acid in pear fruits is at least partly related to the changes in PbPH5 transcription levels.

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Effects of exogenous paclobutrazol and sampling time on the efficiency of in vitro embryo rescue in the breeding of new seedless grape varieties
XU Teng-fei, GUO Yu-rui, YUAN Xiao-jian, CHU Yan-nan, WANG Xiao-wei, HAN Yu-lei, WANG Wen-yuan, WANG Yue-jin, SONG Rui, FANG Yu-lin, WANG Lu-jun, XU Yan
2022, 21 (6): 1633-1644.   DOI: 10.1016/S2095-3119(21)63815-7
Abstract348)      PDF in ScienceDirect      

Embryo rescue technology plays an important role in seedless grape breeding.  However, the efficiency of embryo rescue, including the embryo formation, germination, and seedling rates, is closely related to the parental genotypes, degree of abortion, growth medium, and plant growth regulators.  In this study, we investigated the effects of different concentrations of paclobutrazol (PAC), a plant growth regulator, and embryo collection times on the embryo formation, germination, and seedling rates for different hybrid combinations of grape breeding varieties used for their aroma and cold-resistance traits.  The results showed that the different PAC concentrations had varying impacts on the development of ovules and embryos from the different grape varieties.  The embryo formation rates of the ‘Sultanina Rose’בBeibinghong’ and ‘Kunxiang Seedless’בTaishan-2’ crosses were the highest under the 5.1 μmol L–1 PAC treatment.  The 1.0 μmol L–1 PAC treatment was optimal for the germination and seedling development of the ‘Sultanina Rose’בBeibinghong’ embryos, whereas the 0.2 μmol L–1 PAC treatment induced the highest germination rate for the ‘Sultanina Rose’בKunxiang Seedless’ cross.  The optimal sampling times for each cross varied as 39 d after pollination (DAP) for the ‘Flame Seedless’בMuscat Hamburg’ cross, 46 DAP for the ‘Kunxiang Seedless’בBeibinghong’ cross, and 41 DAP for the ‘Ruby Seedless’בBeibinghong’ and ‘Fantasy Seedless’בShuangyou’ crosses.  Moreover, the medium modified with 0.5 g L–1 of indole-3-butyric acid allowed the malformed seedlings to develop into plantlets and achieve larger progenies.  This study provides a useful basis for further studies into grape embryo rescue and could improve breeding efforts for new seedless grape varieties.

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Changes in paddy cropping system enhanced economic profit and ecological sustainability in central China
ZHOU Yong, YAN Xiao-yuan, GONG Song-ling, LI Cheng-wei, ZHU Rong, ZHU Bo, LIU Zhang-yong, WANG Xiao-long, CAO Peng
2022, 21 (2): 566-577.   DOI: 10.1016/S2095-3119(21)63841-8
Abstract204)      PDF in ScienceDirect      
In China, the traditional early and late season double rice (DR) system is declining accompanied by the fast increase of two newly developed cropping systems: ratoon rice (RR) and rice–crawfish (RC).  Three methodologies: economic analysis, emergy evaluation and life cycle assessment (LCA) were employed to evaluate the economics and sustainability of this paddy cropping system change.  Economic analysis indicated that the income and profit of the RC system were far larger than those of RR and DR.  The income to costs ratio of RR and RC increased by 25.5 and 122.7% compared with that of DR, respectively.  RC had the highest emergy input thanks to increasing irrigation water, electricity, juvenile crawfish and forage input while RR showed a lower total emergy and nonrenewable emergy input, such as irrigation water, electricity, fertilizers and pesticides than DR.  The environmental loading ratios decreased by 16.7–50.4% when cropping system changed from DR to RR or from DR to RC while the emergy sustainability indexes increased by 22.6–112.9%.  The life cycle assessment indicated lower potential environmental impacts of RR and RC, whose total environmental impact indexes were 35.0–61.0% lower than that of DR.  Grain yield of RR was comparable with that of DR in spite of less financial and emergy input of RR, but RC had a much lower grain yield (a 53.6% reduction compared to DR).  These results suggested that RR is a suitable cropping system to achieve the food security, economic and environmental goals.
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Grain zinc and iron concentrations of Chinese wheat landraces and cultivars and their responses to foliar micronutrient applications
JIANG Li-na, MA Jing-li, WANG Xiao-jie, LIU Gang-gang, ZHU Zhao-long, QI Chen-yang, ZHANG Ling-fang, LI Chun-xi, WANG Zhi-min, HAO Bao-zhen
2022, 21 (2): 532-541.   DOI: 10.1016/S2095-3119(21)63614-6
Abstract232)      PDF in ScienceDirect      
Grain zinc (Zn) and iron (Fe) concentrations and their responses to foliar application of micronutrients in 28 Chinese wheat landraces and 63 cultivars were investigated in a two-year field experiment.  The average grain Zn and Fe concentrations were 41.8 mg kg–1 (29.0−63.3 mg kg–1) and 39.7 mg kg–1 (27.9−67.0 mg kg–1), respectively.  Compared with cultivars, landraces had greater grain Zn (11.0%) and Fe (4.8%) concentrations but lower harvest index (HI), grain weight per spike (GWS), grain number per spike (GNS) and thousand grain weight (TGW).  Both Zn and Fe concentrations were negatively and significantly correlated with HI, GWS, and GNS, while showed a poor association with TGW, suggesting that lower HI, GWS, and GNS, but not TGW, accounted for higher Zn and Fe concentrations for landraces than for cultivars.  Grain Zn concentrations of both cultivars and landraces significantly increased after foliar Zn spray and the increase was two-fold greater for landraces (12.6 mg kg–1) than for cultivars (6.4 mg kg–1).  Foliar Fe spray increased grain Fe concentrations of landraces (3.4 mg kg–1) and cultivars (1.2 mg kg–1), but these increases were not statistically significant.  This study showed that Chinese wheat landraces had higher grain Zn and Fe concentrations than cultivars, and greater increases occurred in grain Zn concentration than in grain Fe concentration in response to fertilization, suggesting that Chinese wheat landraces could serve as a potential genetic source for enhancing grain mineral levels in modern wheat cultivars.

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Field mold stress induced catabolism of storage reserves in soybean seed and the resulting deterioration of seed quality in the field
DENG Jun-cai, LI Xiao-man, XIAO Xin-li, WU Hai-jun, YANG Cai-qiong, LONG Xi-yang, ZHANG Qi-hui, Nasir Iqbal, WANG Xiao-chun, YONG Tai-wen, DU Jun-bo, YANG Feng, LIU Wei-guo, ZHANG Jing, WU Xiao-ling, WU Yu-shan, YANG Wen-yu, LIU Jiang
2022, 21 (2): 336-350.   DOI: 10.1016/S2095-3119(20)63594-8
Abstract204)      PDF in ScienceDirect      
Excessive rainfall provides a favorable condition for field mold infection of plants, which triggers field mold (FM) stress.  If FM stress occurs during the late maturation stage of soybean seed, it negatively affects seed yield and quality.  To investigate the responses of soybean seed against FM stress and identify the underlying biochemical pathways involved, a greenhouse was equipped with an artificial rain producing system to allow the induction of mold growth on soybean seed.  The induced quality changes and stress responses were revealed on the levels of both transcriptome and metabolome.  The results showed that soybean seeds produced under FM stress conditions had an abnormal and inferior appearance, and also contained less storage reserves, such as protein and polysaccharide.  Transcriptional analysis demonstrated that genes involved in amino acid metabolism, glycolysis, tricarboxylic acid, β-oxidation of fatty acids, and isoflavone biosynthesis were induced by FM stress.  These results were supported by a multiple metabolic analysis which exhibited increases in the concentrations of a variety of amino acids, sugars, organic acids, and isoflavones, as well as reductions of several fatty acids.  Reprogramming of these metabolic pathways mobilized and consumed stored protein, sugar and fatty acid reserves in the soybean seed in order to meet the energy and substrate demand on the defense system, but led to deterioration of seed quality.  In general, FM stress induced catabolism of storage reserves and diminished the quality of soybean seed in the field.  This study provides a more profound insight into seed deterioration caused by FM stress.
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Dispersal routes of Cercospora zeina causing maize gray leaf spot in China
DUAN Can-xing, ZHAO Li-ping, WANG Jie, LIU Qing-kui, YANG Zhi-huan, WANG Xiao-ming
2022, 21 (10): 2943-2956.   DOI: 10.1016/j.jia.2022.07.042
Abstract182)      PDF in ScienceDirect      

The gray leaf spot caused by Cercospora zeina has become a serious disease in maize in China.  The isolates of C. zeina from Yunnan, Sichuan, Guizhou, Hubei, Chongqing, Gansu, and Shaanxi were collected.  From those, 127 samples were used for genetic diversity analysis based on inter-simple sequence repeat (ISSR) and 108 samples were used for multi-gene sequence analysis based on five gene fragments.  The results indicated that populations of C. zeina were differentiated with a relatively high genetic level and were classified into two major groups and seven subgroups.  The intra-population genetic differentiation of C. zeina is the leading cause of population variation in China, and inter-population genetic similarity is closely related to the colonization time and spread direction.  The multi-gene sequence analysis of C. zeina isolates demonstrated that there were nine haplotypes.  Genetic diversity and multi-gene sequence revealed that Yunnan population of C. zeina, the earliest colonizing in China, had the highest genetic and haplotype diversity and had experienced an expansion event.  With the influence of the southwest monsoon in the Indian Ocean, C. zeina from Yunnan gradually moved to Sichuan, Guizhou, Shaanxi, Gansu, and Chongqing.  Meanwhile, C. zeina was transferred directly from the Yunnan into the Hubei Province via seed and then came into Shaanxi, Henan, and Chongqing along with the wind from Hubei.

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Inhibition of miR397 by STTM technology to increase sweetpotato resistance to SPVD
LI Chen, LIU Xuan-xuan, ABOUELNASR Hesham, MOHAMED HAMED Arisha, KOU Meng, TANG Wei, YAN Hui, WANG Xin, WANG Xiao-xiao, ZHANG Yun-gang, LIU Ya-ju, GAO Run-fei, MA Meng, LI Qiang
2022, 21 (10): 2865-2875.   DOI: 10.1016/j.jia.2022.07.054
Abstract203)      PDF in ScienceDirect      

As a critical food crop, sweetpotato (Ipomoea batatas (L.) Lam.) is widely planted all over the world, but it is deeply affected by Sweetpotato Virus Disease (SPVD).  The present study utilized short tandem target mimic (STTM) technology to effectively up-regulate the expression of laccase (IbLACs) by successfully inhibiting the expression of miR397.  The upstream genes in the lignin synthesis pathway were widely up-regulated by feedback regulation, including phenylalanine ammonialyase (PAL), 4-coumarate-CoAligase (4CL), hydroxycinnamoyl CoA:shikimatetransferase (HTC), caffeicacid O-methyltransferase (COMT), and cinnamyl alcohol dehydrogenase (CAD).  Meanwhile, the activities of PAL and LAC increased significantly, finally leading to increased lignin content.  Lignin deposition in the cell wall increased the physical defence ability of transgenic sweetpotato plants, reduced the accumulation of SPVD transmitted by Bemisia tabaci (Gennadius), and promoted healthy sweetpotato growth.  The results provide new insights for disease resistance breeding and green production of sweetpotato. 

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Preharvest application of melatonin induces anthocyanin accumulation and related gene upregulation in red pear (Pyrus ussuriensis)
SUN Hui-li, WANG Xin-yue, SHANG Ye, WANG Xiao-qian, DU Guo-dong, LÜ De-guo
2021, 20 (8): 2126-2137.   DOI: 10.1016/S2095-3119(20)63312-3
Abstract200)      PDF in ScienceDirect      
Anthocyanins are important components in the peel of red pears and contribute to the appearance of the fruit.  Melatonin application is known to affect anthocyanin biosynthesis, but the effect of preharvest melatonin application on fruit coloration remains largely unknown.  The objective of this study was to determine the effects of preharvest melatonin application on pigmentation, phenolic compounds, and the expression of related genes in Nanhong pear (Pyrus ussuriensis).  The applications were performed during the pre-color-change period by spraying 50 or 200 μmol L–1 of melatonin on fruits.  We found that treatment with melatonin had a significant effect on color development.  The concentrations of anthocyanins and favonols were enhanced by melatonin treatment, whereas hydroxycinnamate and favanol concentrations were reduced.  Quantitative real-time PCR analyses indicated that the transcription levels for most anthocyanin biosynthetic genes and anthocyanin-related transcription factors were induced by melatonin.  Melatonin application also stimulated the expression of melatonin biosynthesis-related genes and consequently caused an increase in endogenous melatonin concentration.  These results provide insights into melatonin-induced fruit coloration and will facilitate the application of exogenous melatonin in agriculture.
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Differences of aroma development and metabolic pathway gene expression between Kyoho and 87-1 grapes
JI Xiao-hao, WANG Bao-liang, WANG Xiao-di, WANG Xiao-long, LIU Feng-zhi, WANG Hai-bo
2021, 20 (6): 1525-1539.   DOI: 10.1016/S2095-3119(20)63481-5
Abstract185)      PDF in ScienceDirect      
Aroma is an important quality trait of grapes and often the focus of consumers, viticulturists and grapevine breeders.  Kyoho is a hybrid between Vitis vinifera and Vitis labrusca with a strawberry-like scent, while 87-1 is an early-ripening mutant of Muscat hamburg, belonging to Vitis vinifera, with a rose scent.  In this study, we compared their aroma compositions and concentrations during berry development by headspace-SPME combined with gas chromatography-mass spectrometry (GC-MS), and analyzed the expression differences of enzyme-encoding genes in the LOX-HPL, MEP and MVA metabolic pathways by qRT-PCR.  Twelve esters were detected in Kyoho during the whole berry development and they were abundant after veraison, but no esters were detected in 87-1 berries.  Linalool was the dominant terpene among the 14 terpenes detected in 87-1 berries, while limited amounts of terpenes were detected in Kyoho berries.  qRT-PCR analysis indicated that the low expression of VvAAT might explain the low content of ester volatiles in 87-1 berries, and the low expression of coding genes in the MEP pathway, especially VvPNLinNer1, might be the reason for the low content of volatile terpenes in Kyoho berries.  The results from this work will promote our understanding of aroma metabolic mechanisms of grapes, and offer some suggestions for grape aromatic quality improvement.
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An improved scheme for infectious bursal disease virus genotype classification based on both genome-segments A and B
WANG Yu-long, FAN Lin-jin, JIANG Nan, GAO Li, LI Kai, GAO Yu-long, LIU Chang-jun, CUI Hong-yu, PAN Qing, ZHANG Yan-ping, WANG Xiao-mei, QI Xiao-le
2021, 20 (5): 1372-1381.   DOI: 10.1016/S2095-3119(20)63424-4
Abstract141)      PDF in ScienceDirect      
Infectious bursal disease (IBD) is caused by infectious bursal disease virus (IBDV), which has a genome consisting of two segments of double-stranded linear RNA.  IBDVs have been traditionally divided into four phenotypes based on their pathogenicity and antigenicity, including classic, variant, very virulent, and attenuated IBDV.  With the emergences of divergent molecular characteristics of novel strains produced by continuous mutations and recombination, it is increasingly difficult to define new IBDV strains using the traditional descriptive classification method.  The most common classification scheme for IBDV with segmented genome is based solely on segment A, while the significance of segment B has been largely neglected.  In this study, an improved scheme for IBDV genotype classification based on the molecular characteristics of both VP2 (a viral capsid protein encoded by segment A) and VP1 (an RNA-dependent RNA polymerase protein encoded by segment B) was proposed for the first time.  In this scheme, IBDV was classified into nine genogroups of A and five genogroups of B, respectively; the genogroup A2 was further divided into four lineages.  The commonly used phenotypic classifications of classic, variant, very virulent, and attenuated IBDVs correspond to the A1B1, A2B1, A3B2, and A8B1 genotypes of the proposed classification scheme.  The novel variant IBDVs including the strains identified in this study were classified as belonging to genotype A2dB1.  The flexibility and versatility of this improved classification scheme will allow the unambiguous identification of existing and emerging IBDV strains, which will greatly facilitate molecular epidemiology studies of IBDV.
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Changes in speciation, mobility and bioavailability of Cd, Cr and As during the transformation process of pig manure by black soldier fly larvae (Hermetia illucens)
WANG Xiao-bo, WU Nan, CAI Rui-jie, GENG Wei-na, XU Xiao-yan
2021, 20 (5): 1157-1166.   DOI: 10.1016/S2095-3119(20)63333-0
Abstract132)      PDF in ScienceDirect      
The black soldier fly larvae (BSFL) (Hermetia illucens) are a good candidate for poultry and livestock manure treatment.  The harvested insect bodies and feces can be used as animal feed and organic fertilizer.  However, heavy metals have a negative impact on the transformation process of the manure by BSFL.  Here we evaluated the effects of Cd, Cr and As in pig manure on the growth of BSFL, as well as the mobility and changes in speciation of the metals during the transformation process.  The results showed that As significantly reduced the weight of BSFL, but Cr and Cd had no significant effects on BSFL growth.  The bioaccumulation factors (BAFs) at various concentrations of Cd (2.8–3.7) were significantly higher than those of Cr (0.44–0.62) and As (0.43–0.45).  The heavy metals in pig manure were mainly transferred to BSFL feces, and the distribution percentages of Cd, Cr and As in the BSFL feces were 52.6–62.0%, 90.3–94.2% and 93.0–93.3%, respectively.  Cd concentrations in BSFL feces were significantly lower than those in the pig manure, while there were no significant differences in the concentrations of Cr and As between BSFL feces and pig manure (except for the treatment with the addition of 150 mg Cr kg–1).  The metal speciation (weak acid soluble, reducible, oxidizable and residual fractions) in BSFL feces obviously changed when compared with pig manure.  In BSFL feces, the reducible proportion of Cr decreased while the oxidizable proportion increased.  Cd mainly existed in the weak acid soluble and reducible states in pig manure and BSFL feces.  For As, the proportions of weak acid soluble and reducible states decreased in BSFL feces.  After the BSFL transformation process, the bioavailable fraction of Cr decreased by 17.3–23.1%, but those of Cd and As did not change significantly, except for As in the CK group.  These findings contribute to our understanding of the roles of BSFL during the biotransformation process of livestock manure as well as the safe utilization of transformed products.
 
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The circulation of unique reassortment strains of infectious bursal disease virus in Pakistan
Altaf HUSSAIN, WU Tian-tian, FAN Lin-jin, WANG Yu-long, Farooq Khalid MUHAMMAD, JIANG Nan, GAO Li, LI Kai, GAO Yu-long, LIU Chang-jun, CUI Hong-yu, PAN Qing, ZHANG Yan-ping, Asim ASLAM, Khan MUTI-UR-REHMAN, Muhammad Imran ARSHAD, Hafiz Muhammad ABDULLAH, WANG Xiao-mei, QI Xiao-le
2020, 19 (7): 1867-1875.   DOI: 10.1016/S2095-3119(20)63183-5
Abstract177)      PDF in ScienceDirect      
Infectious bursal disease (IBD), caused by IBD virus (IBDV), is one of the most devastating and immunosuppressive diseases of the poultry and has been a constraint on the sustainable poultry production around the globe including Pakistan.  While the disease is threatening the poultry industry, the nature of predominant strains of IBDV in Pakistan remained ill-defined.  In this study, an epidemiology survey was conducted in the main chicken-farming regions of Pakistan.  The batch of Pakistan IBDVs genes simultaneously covering both VP1 and VP2 were amplified, sequenced, and analyzed.  The unique segment-reassortant IBDVs (vv-A/Uniq-B), carrying segment A from vvIBDV and segment B from one unique ancestor, were identified as one important type of circulating strains in Pakistan.  The data also discovered the characteristic molecular features of Pakistan IBDVs, which will contribute to scientific vaccine selection and effective prevention of the disease.
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Environmental risks for application of magnesium slag to soils in China
WANG Xiao-bin, YAN Xiang, LI Xiu-ying
2020, 19 (7): 1671-1679.   DOI: 10.1016/S2095-3119(19)62835-2
Abstract141)      PDF in ScienceDirect      
Magnesium slag (MS) is one of the main industrial solid wastes produced by the magnesium industry.  Solving the problem of its disposal has attracted much attention with increasing amounts of solid wastes generated in the production of metallic magnesium.  Because MS contains calcium (Ca), magnesium (Mg), and silicon (Si), some have tried to use MS as Si-Ca-Mg fertilizer or for soil amendment in agriculture.  However, in the magnesium metallurgical process, some pollutant elements are introduced into MS, resulting in the enrichment of these pollutants in MS, such as arsenic (As), chromium (Cr), cadmium (Cd), mercury (Hg), copper (Cu), nickel (Ni), fluorine (F) and chlorine (Cl).  Research indicates that the enrichment of these pollutants can result in high levels, especially for Cd, Hg, Cu, Ni, F and Cl (0–4, 0–0.74, 20–127, 100–170, 2 277–14 800 and 133–1 000 mg kg–1, respectively) in some MS in China.  These levels are often far beyond the limits (≤0.3, ≤0.5, ≤50 and ≤60 mg kg–1 for Cd, Hg, Cu and Ni, respectively) of the Chinese Risk Screening Values for Soil Contamination of Agricultural Land based on the Soil Environmental Quality Risk Control Standard for Soil Contamination of Agricultural Land (GB 15618-2018) or the critical reference values (≤800 and ≤200 for F and Cl, respectively).  The elements Hg, Cu, Cr and F (detected in MS leachate at 0.00023–0.0052, 0.043–3.89, 0.026–0.171, and 1.43–8.52 mg L–1, respectively) also exceed the limits (Class IV–V) of the Chinese Standard for Groundwater Quality (GB/T 14848-2017).  Based on the above results, it is suggested that without any pretreatment for reducing harmful pollutants MS should not be allowed to be applied for soil remediation or conditioning directly into farmlands in order to ensure soil health, food safety and environmental quality. 
 
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The CRISPR/Cas9 induces large genomic fragment deletions of MSTN and phenotypic changes in sheep
DING Yi, ZHOU Shi-wei, DING Qiang, CAI Bei, ZHAO Xiao-e, ZHONG Shu, JIN Miao-han, WANG Xiao-long, MA Bao-hua, CHEN Yu-lin
2020, 19 (4): 1065-1073.   DOI: 10.1016/S2095-3119(19)62853-4
Abstract230)      PDF in ScienceDirect      
The CRISPR/Cas9 system has been extensively used to engineer genetic loci for the generation of knockouts, insertions, and point mutations in animal models.  However, many mutations that have been reported in animals are small insertions or deletions.  This study used the CRISPR/Cas9 system to induce large DNA fragment deletions in MSTN via three guide RNAs in sheep.  This successfully achieved the precise gene editing of the ovine MSTN gene by injecting both Cas9 mRNA and sgRNAs into embryos at the one-cell stage.  Of 10 edited animals, 3 animals (30%) exhibited large genomic fragment deletions (~5 kb).  Furthermore, the body weights of these 3 animals were significantly different (P0<0.0001, P15=0.001, P30=0.005, P60=0.027) between lambs with large deletions and wildtype lambs.  In addition, the edited lambs were also significantly different (P0<0.0001, P15<0.0001, P30=0.002, P60=0.011) compared with wildtype.  These results suggest that the generated MSTN knockout sheep is a reliable and effective animal model for further study.  Furthermore, this method is time- and labor-saving, and efficient for the creation of animal models for agriculture, biology, and medicine.
 
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Environmental risk for application of ammonia-soda white mud in soils in China
WANG Xiao-bin, YAN Xiang, LI Xiu-ying
2020, 19 (3): 601-611.   DOI: 10.1016/S2095-3119(19)62745-0
Abstract153)      PDF in ScienceDirect      
In recent years, some reports, mainly from Chinese research, show that there has been an increasing trend in the use of ammonia-soda residue (ASR) (or called ammonia-soda white mud) as a soil conditioner in farmlands.  Up to now, the studies on ASR have focused on its utilization for acid soil amendment in agriculture, but few studies have assessed its environmental risk.  ASR contains pollutant elements such as mercury (Hg), cadmium (Cd), copper (Cu) and fluorine (F) and the purpose of this study was to review research on the environmental impacts of ASR application in agriculture.  Observations obtained from 23 research reports indicate that the concentrations of  Hg, Cd, Cu, F and Cl (0–170, 0.01–2.8, 4.5–200, 2000–24700 and 1 600–188 000 mg kg–1, respectively) in ASR may exceed the limits (≤0.5, ≤0.3 and ≤50 mg kg–1 for Hg, Cd and Cu, respectively) of Chinese Risk Screening Values for Soil Contamination of Agricultural Land (GB 15618-2018 2018) or the refereed critical value (≤800 and ≤200 mg kg–1 for F and Cl, respectively) based on Chinese research.  The concentrations of the elements Hg, Cd, Cu, F and Cl  in the leachate of ASR detected by the extraction tests also exceed the limits (Class IV–V) of the Chinese Standard for Groundwater Quality (GB/T 14848-2017 2017).  Based on the above results, it is suggested that ASR without any pretreatment for reducing harmful pollutants should not be used for soil remediation or conditioning of farmlands, to ensure soil health, food safety and environmental quality. 
 
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Molecular characteristics and temperature tolerance function of the transient receptor potential in the native Bemisia tabaci AsiaII3 cryptic species
JI Shun-xia, SHEN Xiao-na, LIANG Lin, WANG Xiao-di, LIU Wan-xue, WAN Fang-hao, Lü Zhi-chuang
2020, 19 (11): 2746-2757.   DOI: 10.1016/S2095-3119(20)63226-9
Abstract111)      PDF in ScienceDirect      
Insects are poikilothermic animals, and temperature is one of the most important abiotic factors affecting their spread and distribution.  For example, differences in thermal tolerance may underlie the significant differences in geographical distributions between the native AsiaII3 and invasive MED (Mediterranean) cryptic Bemisia tabaci species in China.  Transient receptor potential (TRP) channels are key components of the insect temperature perception system and act as molecular thermometers since they can be activated by specific changes in temperature.  In this study, we cloned and characterized the AsiaII3 BtTRP gene and revealed its functions in the response to thermal stress.  The full-length cDNA of BtTRP was 3 821 bp, with a 3 501-bp open reading frame encoding a 132.05-kDa protein.  Comparing the deduced amino acid sequences of AsiaII3 BtTRP and MED TRP revealed five amino acid differences.  In situ hybridization indicated that BtTRP might be widely expressed throughout the AsiaII3 adult body.  BtTRP mRNA expression reached the highest levels after exposure to mild thermal stimuli (12 and 35°C), showing that BtTRP expression can be induced by temperature stress.  Furthermore, the thermal tolerance of AsiaII3 after BtTRP dsRNA feeding was significantly lower than that of the control.  Taken together, the present study highlights the importance of TRP channels for B.?tabaci thermal resistance, and allows us to infer that the differences in amino acids between AsiaII3 and MED might cause the differences in thermal tolerance of these two cryptic species.  This study provides a new direction for investigating geographic distribution differences between invasive and native insects.
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Pseudomonas sp. TK35-L enhances tobacco root development and growth by inducing HRGPnt3 expression in plant lateral root formation
CAO Yuan-yuan, NI Hai-ting, LI Ting, LAY Khien-duc, LIU Dai-song, HE Xiang-yi, OU Kang-miao, TANG Xin-yun, WANG Xiao-bo, Qiu Li-juan
2020, 19 (10): 2549-2560.   DOI: 10.1016/S2095-3119(20)63266-X
Abstract140)      PDF in ScienceDirect      
Rhizosphere colonization is a key requirement for the application of plant growth-promoting rhizobacteria (PGPR) as a biofertilizer.  Signaling molecules are often exchanged between PGPR and plants, and genes in plants may respond to the action of PGPR.  Here, the luciferase luxAB gene was electrotransformed into Pseudomonas sp. strain TK35, a PGPR with an affinity for tobacco, and the labelled TK35 (TK35-L) was used to monitor colonization dynamics in the tobacco rhizosphere and evaluate the effects of colonization on tobacco growth and root development.  The transcript levels of the hydroxyproline-rich glycoprotein HRGPnt3 gene, a lateral root induction indicator, in tobacco roots were examined by qPCR.  The results showed that TK35-L could survive for long periods in the tobacco rhizosphere and colonize new spaces in the tobacco rhizosphere following tobacco root extension, exhibiting significant increases in root development, seedling growth and potassium accumulation in tobacco plants.  The upregulation of HRGPnt3 transcription in the inoculated tobacco suggested that TK35-L can promote tobacco root development by upregulating the transcript levels of the HRGPnt3 gene, which promotes tobacco seedling growth.  These findings lay a foundation for future studies on the molecular mechanism underlying the plant growth-promoting activities of PGPR.  Furthermore, this work provided an ideal potential strain for biofertilizer production.
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Two new SINE insertion polymorphisms in pig Vertnin (VRTN) gene revealed by comparative genomic alignment
ZHENG Yao, CHEN Cai, CHEN Wei, WANG Xiao-yan, WANG Wei, GAO Bo, Klaus WIMMERS, MAO Jiu-de, SONG Cheng-yi
2020, 19 (10): 2514-2522.   DOI: 10.1016/S2095-3119(20)63255-5
Abstract125)      PDF in ScienceDirect      
Despite one SINE retrotransposon insertion polymorphism (sRTIP) in the vertebrae development-associated (VRTN) gene was identified in pigs, the structural variations (SVs) in VRTN gene and its proximal flank regions were largely unknown.  VRTN genic and flanking sequences from 14 breeds were assembled or downloaded from whole-genome shotgun contings (WGS) database, and aligned to identify the SVs with Clustalx, and retrotransposons in VRTN gene were annotated by RepeatMasker, the splicing patterns of VRTN gene were predicted by Genescan, and large SVs were evaluated by PCR.  A total of 12 small SVs and three large SVs in intron of VRTN, derived from SINE insertion polymorphisms, were identified, and two of them (VRTN-sRTIP2 and VRTN-sRTIP3) were not reported before.  These VRTN-sRTIPs may affect the splicing patterns of VRTN.  They displayed polymorphisms in most detected eight breeds.  VRTN-sRTIP2 and VRTN-sRTIP3 showed Hardy-Weinberg equilibrium distributions in most populations except the Chinese local Erhualian pigs, while VRTN-sRTIP1 showed genetic equilibrium in Erhualian pigs.  Three VRTN-sRTIPs were identified, and displayed polymorphisms in pigs, and two of them were not reported before.  These SVs provide a useful molecular markers for genetic analysis in pigs, and offer new information to facilitate the understanding the SVs of VRTN gene and their putative roles in the variation of vertebral number.
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Evaluation of soil flame disinfestation (SFD) for controlling weeds, nematodes and fungi
WANG Xiao-ning, CAO Ao-cheng, YAN Dong-dong, WANG Qian, HUANG Bin, ZHU Jia-hong, WANG Qiu-xia, LI Yuan, OUYANG Can-bin, GUO Mei-xia, WANG Qian
2020, 19 (1): 164-172.   DOI: 10.1016/S2095-3119(19)62809-1
Abstract140)      PDF in ScienceDirect      
Soil flame disinfestation (SFD) is a form of physical disinfestation that can be used both in greenhouses and on field crops.  Its use for soil disinfestation in different crop growing conditions makes it increasingly attractive for controlling soil-borne pathogens and weeds.  But little is known about the effect on weeds and soilbrone diseases.  This study reports on greenhouses and field crops in China that determined the efficacy of SFD to control weeds, nematodes and fungi.  It also determined the impact of SFD on the soil physical and chemical properties (water content, bulk density, NO3-N content, NH4+-N content, conductivity and organic matter) in three field trials.  A second generation SFD machine was used in these trials.  SFD treatment significantly reduced weeds (>87.8%) and root-knot nematodes (Meloidogyne incognita) (>98.1%).  Plant height and crop yield was significantly increased with SFD treatment.  NO3-N and NH4+-N increased after the SFD treatment, and there was also an increase in soil conductivity.  Water content, bulk density and organic matter decreased significantly in the soil after the SFD treatment compared to the control.  Soil flame disinfestation is a potential technique for controlling weeds and diseases in greenhouses or in fields.  SFD is a non-chemical, safe, environmentally-friendly soil disinfection method. 
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