Scientia Agricultura Sinica ›› 2019, Vol. 52 ›› Issue (16): 2758-2767.doi: 10.3864/j.issn.0578-1752.2019.16.002

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Coefficient of Parentage Analysis Among Naked Barley Varieties in Qinghai-Tibet Plateau

LI Jian1,2,FENG XianHong2,CAI YiLin1()   

  1. 1 College of Agronomy and Biotechnology, Southwest University, Chongqing 400715
    2 Ganzi Tibetan Autonomous Prefecture Institute of Agricultural Science, Kangding 626000, Sichuan
  • Received:2019-04-03 Accepted:2019-06-08 Online:2019-08-16 Published:2019-08-21
  • Contact: YiLin CAI E-mail:caiyilin1789@163.com

Abstract:

【Objective】 The present analysis of genetic diversity of bred naked barley varieties of the Qinghai-Tibet Plateau was conducted to evaluate their genetic diversity, to explore measures to broaden the genetic basis, and to promote the breeding of naked barley varieties. 【Method】 In total, 105 bred naked barley varieties grown commonly and broadly across Qinghai-Tibet plateau, which has been surveyed since 1950, and 3 introduced varieties were selected as study materials. The genetic diversity of the investigated varieties was estimated by coefficient of parentage (COP), and then based on these COP values, a clustering analysis was conducted using Lance and Williams distance and UPGMA. Ultimately, the core parents in Qinghai-Tibet plateau were determined by examining the cumulative direct coefficient of parentage (CD-COP). 【Result】Overall, 18.01% of variety combinations were genetically related. The COP of all combinations ranged from 0.000 to 0.750, with an average of 0.053, which was significantly higher than that of the main barley varieties of China and North American. Based on the released time, the investigated varieties were divided into seven decade-long periods since 1950. The average COP value of the combinations that was made by the investigated varieties bred in the 1970s and 1980s were higher, reaching 0.115 and 0.107, respectively, while this index was lower at the 1990s and the recent decade, reaching 0.040 and 0.032, respectively. The numbers of investigated varieties from the Tibet Autonomous Region, Qinghai Province, Sichuan Province, and Gansu Province were 48, 27, 17, and 12, respectively. The average COP of the combinations made by the varieties from Gansu Province was highest, reaching 0.220, while the average COP of the combinations made by the bred varieties from Tibet Autonomous Region, Qinghai Province, and Sichuan Province were similar, reaching 0.094, 0.122, and 0.138, respectively. Cluster analysis placed the investigated varieties into seven groups, of which 25 were in groups II and III, with a relatively low average COP of combinations within each group, while 83 were in the other five groups, which had higher average COP of combinations. The cumulative direct COP of 40 investigated varieties were more than 0; of these, 9 bred varieties were identified as important core parents in Qinghai-Tibet plateau, from which 67 varieties had been derived. 9 core parents and their 67 derivatives account for 72.38% of the number of investigated bred varieties. In the 1960s, the number of core parents and their derivatives accounted for 41.76% of the number of investigated varieties. For the next four decades, the proportions of core parents and their derivatives out of all investigated bred varieties in each period reached 80.00%, 80.77%, 76.47%, and 72.22%, respectively. In the last decade, the index has declined further, but still reaches 68.75%. In the Tibet Autonomous Region, Qinghai Province, Sichuan Province, and Gansu Province, the proportion of core parents and their derivatives out of the number of the investigated bred varieties reached 79.17%, 62.96%, 70.59%, and 75.00%, respectively. The total number of parents used in breeding was 118, including 97 local parents (82.20%), 15 introduced parents (12.71%), and 6 parents lacking source information. 【Conclusion】9 core parents and their 67 derivatives constitute the majority of naked barley varieties. The utilization of introduced barley germplasm has been inefficient. Consequently, the genetic diversity of naked barley varieties cultivated across the Qinghai-Tibet Plateau is relatively lower.

Key words: Qinghai-Tibet Plateau, naked barley, bred varieties, coefficient of parentage, genetic diversity

Fig. 1

The COP analysis of the investigated varieties at each era"

Fig. 2

The COP analysis of the investigated varieties from each region"

Fig. 3

The temporal distribution of investigated varieties that belong to seven groups"

Fig. 4

The COP analysis of the investigated varieties from each group"

Fig. 5

The proportion occupied by the core parents and their derivatives within each group"

Fig. 6

The proportion occupied by the core parents and their derivatives at each era"

Fig. 7

The amount of varieties that were bred by using the nine core parents as parents or ancestors at each era a: The amount of varieties that were bred by using the nine core parents as parents; b: The amount of varieties that were bred by using the nine core parents as ancestors; c: The amount of investigated varieties at each era; d: The percentage of the amount of varieties that were bred by using the nine core parents as parents to the amount of investigated bred varieties at each era"

Fig. 8

The proportion occupied by the core parents and their derivatives at each area a: The amount of frequently-used core parents; b: The amount of core parents and their derivatives; c: The percentage of the amount of core parents and their derivatives to the amount of total varieties at each area"

Fig. 9

The techniques used in the breeding process of the investigated varieties"

[1] 赵贯锋, 余成群, 钟志明, 武俊喜, 李少伟, 孙维, 苗彦军 . 西藏食物安全战略初探. 西藏科技, 2016(5):17-21.
ZHAO G F, YU C Q, ZHONG Z M, WU J X, LI S W, SUN W, MIAO Y J . The exploratory research of Tibetan food security strategy. Tibet’s Science and Technology, 2016(5):17-21. (in Chinese)
[2] MARTIN J M, BLAKE T K, HOCKETT E A . Diversity among north American spring barley cultivars based on coefficients of parentage. Crop Science, 1991,31(5):1131-1137.
[3] REN X F, NEVO E, SUN D F, SUN G L . Tibet as a potential domestication center of cultivated barley of China. PLoS ONE, 2013,8(5):e62700.
[4] 吴昆仑 . 青稞种质资源的SSR标记遗传多样性分析. 麦类作物学报, 2011,31(6):1030-1034.
doi: 10.7606/j.issn.1009-1041.2011.06.006
WU K L . Genetic diversity analysis of hulless barley germplasm by SSR markers. Journal of Triticeae Crops, 2011,31(6):1030-1034. (in Chinese)
doi: 10.7606/j.issn.1009-1041.2011.06.006
[5] 曾兴权, 王玉林, 徐齐君, 原红军, 扎西罗布, 尼玛扎西 . 利用SSR引物分析西藏青稞种质资源的遗传多样性. 麦类作物学报, 2013,33(2):260-267.
doi: 10.7606/j.issn.1009-1041.2013.02.009
ZENG X Q, WANG Y L, XU Q J, YUAN H J, ZAXI L B, NIMA Z X . Assessment of Genetic diversity in Tibetan hulless barley germplasm (Hordeum vulgare L. var. nudum HK. F.) by SSR Primers. Journal of Triticeae Crops, 2013,33(2):260-267. (in Chinese)
doi: 10.7606/j.issn.1009-1041.2013.02.009
[6] 巴桑玉珍, 刘新春, 付国勇, 李东梅, 王丹丹, 强小林, 冯宗云 . 青藏高原青稞耐寒种质资源基于SSR标记的遗传多样性及群体结构分析. 麦类作物学报, 2017,37(1):40-47.
BASANG Y Z, LIU X C, FU G Y, LI D M, WANG D D, QIANG X L, FENG Z Y . Genetic Diversity and population structure analysis of hulless barley with cold tolerance from the Qinghai-Tibetan plateau revealed by SSR markers. Journal of Triticeae Crops, 2017,37(1):40-47. (in Chinese)
[7] 杨菁, 迟德钊, 吴昆仑, 何桂芳 . 青海省栽培青稞SSR标记遗传多样性研究. 安徽农业科学, 2010,12(8):4307-4309.
YANG J, CHI D Z, WU K L, HE G F . Genetic diversity of SSR markers in cultivated Horrdeum vulgare L. in Qinghai province. Journal of Anhui Agricultural Science, 2010,38(8):4307-4309. (in Chinese)
[8] 孟亚雄, 孟祎林, 汪军成, 司二静, 张海娟, 任盼荣, 马小乐, 李葆春, 杨轲, 王化俊 . 青稞遗传多样性及其农艺性状与SSR标记的关联分析. 作物学报, 2016,42(2):180-189.
doi: 10.3724/SP.J.1006.2016.00180
MENG Y X, MENG Y L, WANG J C, SI E J, ZHANG H J, REN P R, MA X L, LI B C, YANG K, WANG H J . Genetic diversity and association analysis of agronomic characteristics with SSR markers in hulless barley. Acta Agronomica Sinica, 2016,42(2):180-189. (in Chinese)
doi: 10.3724/SP.J.1006.2016.00180
[9] 孟凡磊, 强小林, 佘奎军, 唐亚伟, 胡银岗 . 西藏主要农区青稞品种的遗传多样性分析. 作物学报, 2007,33(11):1910-1914.
MENG F L, QIANG X L, SHE K J, TANG Y W, HU Y G . Genetic diversity analysis among hulless barley varieties from the major agricultural areas of Tibet. Acta Agronomica Sinica, 2007,33(11):1910-1914. (in Chinese)
[10] 杨平, 刘仙俊, 刘新春, 李俊, 王希文, 何守朴, 李刚, 杨武云, 冯宗云 . 利用SRAP标记研究四川高原青稞育成品种的遗传多样性. 遗传, 2008,30(1):115-122.
doi: 10.3724/SP.J.1005.2008.00115
YANG P, LIU X J, LIU X C, LI J, WANG X W, HE S P, LI G, YANG W Y, FENG Z Y . Genetic diversity analysis of the developed Qingke (hulless barley) varieties from the plateau regions of Sichuan Province in China revealed by SRAP markers. Hereditas, 2008,30(1):115-122. (in Chinese)
doi: 10.3724/SP.J.1005.2008.00115
[11] ALMANZA-PINZÓN M I, KHAIRALLAH M, FOX P N, WARBURTON M L . Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica, 2003,130(1):77-86.
[12] CASAS A M, IGARTUA E, VALLES M P, MOLINA-CANO J L . Genetic diversity of barley cultivars grown in Spain, estimated by RFLP, similarity and coancestry coefficients. Plant Breeding, 2010,117(5):429-435.
[13] CUI Z L, CARTER T E, BURTON J W . Genetic base of 651 Chinese soybean cultivars released during 1923 to 1995. Crop Science, 2000,40(5):1470-1481.
[14] KHERA P, SINGH A K, PRIYADARSHI R, KHANDEKAR D, ALLU R K, HIREMATH C, KUMAR R, MOHAN R, ULAGANATHAN K, SHENOY V . Genetic variability in trait-specific rice germplasm groups based on coefficient of parentage, SSR markers and fertility restoration. Plant Genetic Resources, 2015,13(1):56-67.
[15] YOU F M, DUGUID S D, LAM I, CLOUTIER S, RASHID K Y, BOOKER H M . Pedigrees and genetic base of flax cultivars registered in Canada. Canadian Journal of Plant Science, 2016,96(5):837-852.
[16] 王江春, 胡延吉, 余松烈, 王振林, 刘爱峰, 王洪刚 . 建国以来山东省小麦品种及其亲本的亲缘系数分析. 中国农业科学, 2006,39(4):664-672.
WANG J C, HU Y J, YU S L, WANG Z L, LIU A F, WANG H G . Relationship coefficient analysis among winter wheat varieties and their parents in Shandong province after liberation. Scientia Agricultura Sinica, 2006,39(4):664-672. (in Chinese)
[17] 刘章雄, 石孙, 李卫东, 陈立军, 常汝镇, 邱丽娟 . 1983—2010年北京市大豆育成品种的亲缘关系分析. 作物学报, 2013,39(9):1693-1700.
doi: 10.3724/SP.J.1006.2013.01693
LIU Z X, SHI S, LI W D, CHEN L J, CHANG R Z, QIU L J . Analysis of parental relationship for soybean cultivars released from 1983 to 2010 in Beijing. Acta Agronomica Sinica, 2013,39(9):1693-1700. (in Chinese)
doi: 10.3724/SP.J.1006.2013.01693
[18] ZENG X, GUO Y, XU Q, MASCHER M, GUO G, LI S, MAO L, LIU Q, XIA Z, ZHOU J, YUAN H, TAI S, WANG Y, WEI Z, SONG L, ZHA S, LI S, TANG Y, BAI L, ZHUANG Z, HE W, ZHAO S, FANG X, GAO Q, YIN Y, WANG J, YANG H, ZHANG J, HENRY R J, STEIN N, TASHI N . Origin and evolution of Qingke barley in Tibet. Nature Communications, 2018,9(1):5433.
[19] 郭焕强, 王文峰, 姚全杰, 孙丹, 姚小波, 王翠玲, 田世富, 包海柱, 王凤涛, 冯晶, 蔺瑞明, 徐世昌 . 大麦主栽品种亲缘系数和对叶斑病的抗性分析. 植物遗传资源学报, 2016,17(4):586-598.
GUO H Q, WANG W F, YAO Q J, SUN D, YAO X B, WANG C L, TIAN S F, BAO Hai Z, WANG F T, FENG J, LIN R M, XU S C . Analysis on coefficient of parentage of major barley varieties and their spot blotch resistance. Journal of Plant Genetic Resources, 2016,17(4):586-598. (in Chinese)
[20] MIKEL M A, KOLB F L . Genetic diversity of contemporary North American barley. Crop Science, 2008,48(4):1399-1407.
[21] 盖红梅, 王兰芬, 游光霞, 郝晨阳, 董玉琛, 张学勇 . 基于SSR标记的小麦骨干亲本育种重要性研究. 中国农业科学, 2009,42(5):1503-1511.
GE H M, WANG L F, YOU G X, HAO C Y, DONG Y C, ZHANG X Y . Fundamental roles of cornerstone breeding lines in wheat reflected by SSR random scanning. Scientia Agricultura Sinica, 2009,42(5):1503-1511. (in Chinese)
[22] 张京 . 中国大麦育种主要矮源的遗传等位测验. 作物学报, 1998,24(1):42-46.
ZHANG J . AIlelism tests for the dwarf genes in the three main dwarf sources of barley. Acta Agronomica Sinica, 1998,24(1):42-46. (in Chinese)
[23] DAI F, NEVO E, WU D, COMADRAN J, ZHOU M, QIU L, CHEN Z, BEILES A, CHEN G, ZHANG G . Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences of the United States of America, 2012,109(42):16969-16973.
[24] ZENG X, LONG H, WANG Z, ZHAO S, TANG Y, HUANG Z, WANG Y, XU Q, MAO L, DENG G, YAO X, LI X, BAI L, YUAN H, PAN Z, LIU R, CHEN X, WANGMU Q, CHEN M, YU L, LIANG J, DUNZHU D, ZHENG Y, YU S, LUOBU Z, GUANG X, LI J, DENG C, HU W, CHEN C, TABA X, GAO L, LV X, ABU Y B, FANG X, NEVO E, YU M, WANG J, TASHI N . The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau. Proceedings of the National Academy of Sciences of the United States of America, 2015,112(4):1095-1100.
[25] 巴桑玉珍, 强小林 . 西藏青稞育种的成就与经验分析. 西藏农业科技, 2004,26(1):26-36.
BASHANG Y Z, QIANG X L . Tibet the highland barley teachs the achievement and the experience analysis of the kind. Tibet Journal of Agricultural Sciences, 2004,26(1):26-36. (in Chinese)
[26] NEWMAN W C, NEWMAN R K . A brief history of barley foods. Cereal Foods World, 2006,51(1):4-7.
[27] MILNER S G, JOST M, TAKETA S, MAZON E R, HIMMELBACH A, OPPERMANN M, WEISE S, KNUPFFER H, BASTERRECHEA M, KONIG P, SCHULER D, SHARMA R, PASAM R K, RUTTEN T, GUO G, XU D, ZHANG J, HERREN G, MULLER T, KRATTINGER S G, KELLER B, JIANG Y, GONZALEZ M Y, ZHAO Y, HABEKUß A, FARBER S, ORDON F, LANGE M, BORNER A, GRANER A, REIF J C, SCHOLZ U, MASCHER M, STEIN N . Genebank genomics highlights the diversity of a global barley collection. Nature Genetics, 2019,51:319-326.
[28] SCHMIDT M, KOLLERS S, MAASBERG-PRELLE A, GROSSER J, SCHINKEL B, TOMERIUS A, GRANER A, KORZUN V . Prediction of malting quality traits in barley based on genome-wide marker data to assess the potential of genomic selection. Theoretical & Applied Genetics, 2016,129(2):203-213.
[29] TAKETA S, AMANO S, TSUJINO Y, SATO T, SAISHO D, KAKEDA K, NOMURA M, SUZUKI T, MATSUMOTO T, SATO K, KANAMORI H, KAWASAKI S, TAKEDA K . Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proceedings of the National Academy of Sciences of the United States of America, 2008,105(10):4062-4067.
[30] CHEN H, JIAO C, WANG Y, WANG Y, TIAN C, YU H, WANG J, WANG X, LU F, FU X, XUE Y, JIANG W, LING H, LU H, JIAO Y . Comparative population genomics of bread wheat (Triticum aestivum) reveals its cultivation and breeding history in China. bioRxiv, 2019: 519587.
[31] WATSON A, GHOSH S, WILLIAMS M J, CUDDY W S, SIMMONDS J, REY M D, HATTA M A M, HINCHLIFFE A, STEED A, REYNOLDS D, ADAMSKI N M, BREAKSPEAR A, KOROLEV A, RAYNER T, DIXON L E, RIAZ A, MARTIN W, RYAN M, EDWARDS D, BATLEY J, RAMAN H, CARTER J, ROGERS C, DOMONEY C, MOORE G, HARWOOD W, NICHOLSON P, DIETERS M J, DELACY I H, ZHOU J, UAUY C, BODEN S A, PARK R F, WULFF B B H, HICKEY L T . Speed breeding is a powerful tool to accelerate crop research and breeding. Nature Plants, 2017,4(1):23-29.
[1] HE ZhiLin, SUN CuiXia, YUE HongLi, TAN YueXia, ZHANG YaoHai, WANG FuSheng, LIU SiTao, JIANG Dong. Genetic Diversity Analysis and GWAS of Alloocimene Based on Resequencing of Citron, Lemon Germplasm Resources [J]. Scientia Agricultura Sinica, 2026, 59(2): 386-401.
[2] XU YuJuan, ZHANG Jie, WANG TianYi, CHEN HaoYang, ZHAO JiaJia, WU BangBang, HAO YuQiong, LI XiaoHua, ZHENG XingWei, ZUO JingJing, ZHENG Jun. Identification of Glu-A3 and Glu-B3 of Low-Molecular-Weight Glutenin in Shanxi Wheat and Its Effect on Quality [J]. Scientia Agricultura Sinica, 2025, 58(24): 5110-5127.
[3] CHEN CaiJin, MA Lin, JIANG QingXue, LIU JinHui, MIAO Tong, ZHANG ZhiPeng, MENG Xiang, MA XiaoRan, ZHOU XinYue, ZHANG Jian, LIU WenHui, WANG XueMin. Genetic Diversity Analysis of Phenotypic Traits of 244 Forage Oat Germplasm Resources [J]. Scientia Agricultura Sinica, 2025, 58(23): 4825-4836.
[4] WEI YiMin, ZHOU MeiLiang, TANG Yu. Origin, Evolution and Spread of Crop Buckwheat [J]. Scientia Agricultura Sinica, 2025, 58(21): 4305-4316.
[5] LIU XiaoXu, ZHONG ZeXin, QIU JiaRen, YANG ChunXiao, ZHANG YongJun, XIE Wen, ZHANG YouJun, PAN HuiPeng. GENETIC DIVERSITY OF MTCO1 IN DIFFERENT GEOGRAPHICAL POPULATIONS OF MEGALUROTHRIPS USITATUS [J]. Scientia Agricultura Sinica, 2025, 58(21): 4361-4371.
[6] GUO MengZe, ZHANG Lei, SUN PingPing, JIANG Biao, YAN JinQiang, LI ZhengNan. Molecular Characterization and Evolutionary Dynamics of Tomato Leaf Curl New Delhi Virus Isolate from Wax Gourd (Benincasa hispida) in Guangdong [J]. Scientia Agricultura Sinica, 2025, 58(19): 3890-3904.
[7] LIU PengPeng, LI JiangBo, XU HongJun, NIE YingBin, HAN XinNian, KONG DeZhen, SANG Wei. Genetic Diversity Analysis of Protein Fractions and Quality in Xinjiang Winter Wheat Cultivar Resources [J]. Scientia Agricultura Sinica, 2025, 58(15): 2948-2959.
[8] WANG Hui, DING BaoPeng, LI YuXian, REN QuanRu, ZHOU Hai, ZHAO JunLiang, HU HaiFei. Research Progress and Prospects on Crop Pan-Genomics [J]. Scientia Agricultura Sinica, 2025, 58(11): 2045-2061.
[9] LI Pei, HE ZhiLin, TAN YueXia, ZHAO WanTong, FENG JinYing, CHEN GuiHu, YAN Chi, WANG ZiHao, HUANG Ping, JIANG Dong. Genetic Diversity Analysis of Mandarin and Excellent Germplasm Screening Based on Whole-Genome Resequencing Data and Phenotypic Traits [J]. Scientia Agricultura Sinica, 2024, 57(23): 4761-4773.
[10] XU JinQing, BIAN HaiYan, CHEN TongRui, WANG Lei, WANG HanDong, YOU En, DENG Chao, TANG YouLin, SHEN YuHu. Comparison of the Genome Sequence Polymorphisms Between the Main Naked Barley Varieties Kunlun 14 and Kunlun 15 in Qinghai Province [J]. Scientia Agricultura Sinica, 2024, 57(21): 4192-4204.
[11] YANG Chun, YANG DaiXing, LI Yan, LIANG SiHui, DENG XiaoQiang, QIAO DaHe, CHEN Juan, GUO Yan, LIN KaiQin, CHEN ZhengWu. Comprehensive Analysis of Morphologic Characters and Biochemical Components of Guizhou Dashu Tea Germplasms [J]. Scientia Agricultura Sinica, 2024, 57(19): 3894-3916.
[12] LI YuShan, XIAO Jing, MA Yue, TIAN Chao, ZHAO LianJia, WANG Fan, SONG Yu, JIANG ChengYao. Identification and Evaluation of Phenotypic Characters and Genetic Diversity Analysis of 169 Tomato Germplasm Resources [J]. Scientia Agricultura Sinica, 2024, 57(18): 3671-3683.
[13] ZHAI CaiJiao, GE LiJiao, CHENG YuJing, QIU Liang, WANG XiaoQiu, LIU ShuiDong. Genetic Diversity Analysis of Wax Gourd and Chieh-Qua Germplasm Resources Based on Phenotypic Traits and SSR Markers [J]. Scientia Agricultura Sinica, 2024, 57(17): 3440-3457.
[14] LEI MengLin, LIU Xia, WANG YanZhen, CUI GuoQing, MU ZhiXin, LIU LongLong, LI Xin, LU LaHu, LI XiaoLi, ZHANG XiaoJun. Genetic Diversity Analysis of Winter Wheat Germplasm Resources in Shanxi Province Based on 55K SNP Array [J]. Scientia Agricultura Sinica, 2024, 57(10): 1845-1856.
[15] ZHANG YiZhong, ZHANG XiaoJuan, LIANG Du, GUO Qi, FAN XinQi, NIE MengEn, WANG HuiYan, ZHAO WenBo, DU WeiJun, LIU QingShan. Genetic Diversity Analysis and Comprehensive Evaluation of Sorghum Breeding Materials Based on Phenotypic Traits [J]. Scientia Agricultura Sinica, 2023, 56(15): 2837-2853.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!