Scientia Agricultura Sinica ›› 2025, Vol. 58 ›› Issue (2): 307-325.doi: 10.3864/j.issn.0578-1752.2025.02.008

• SOIL & FERTILIZER·WATER-SAVING IRRIGATION·AGROECOLOGY & ENVIRONMENT • Previous Articles     Next Articles

Characterization and Correlation Analysis of Soil Dissolved Organic Matter and Microbial Communities Under Long-Term Application of Fresh and Composted Manure

YUAN HuiLin1(), LI YaYing2(), GU WenJie2, XU PeiZhi2, LU YuSheng2, SUN LiLi2, ZHOU ChangMin2, LI WanLing2, QIU RongLiang1()   

  1. 1 College of Natural Resources and Environment, South China Agricultural University/Lingnan Modern Agricultural Science and Technology Laboratory of Guangdong Province, Guangzhou 510642
    2 Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences/Southern Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture and Rural Affairs/Guangdong Key Laboratory of Nutrient Resource Recycling and Cultivated Land Conservation/Guangdong Engineering Research Center of Soil Microorganisms and Cultivated Land Conservation/Maoming Sub-center of Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, Guangzhou 510640
  • Received:2024-01-23 Accepted:2024-03-04 Online:2025-01-21 Published:2025-01-21
  • Contact: LI YaYing, QIU RongLiang

Abstract:

【Objective】This experiment was conducted to investigate the optical properties of dissolved organic matter (DOM) and the intrinsic relationship with soil microbial communities diversity and structure under long-term application of fresh and composted chicken/pig manure, so as to provide a theoretical reference of soil ecology for the implementation of recycling agriculture in the red soil area.【Method】Based on an 11-year (2011-2022) long-term experiment (sweet corn-sweet corn-cabbage rotation) of the National Soil Quality Guangzhou Red Soil Observatory Experiment Station, the fertilization regimes included no manure, chicken manure organic fertilizer, fresh chicken manure, fresh pig manure organic fertilizer, and fresh pig manure. Surface soil samples were collected and subjected to soil chemical properties determination, DOM UV-absorption characterization, parallel factor analysis of DOM fluorescence absorption characteristics, and Illumina MiSeq high-throughput sequencing, respectively. The main influencing factors were analyzed based on multivariate analysis.【Result】The composted manure significantly increased soil organic matter (122.5%-354.8%) and nutrient content, among which the chicken manure source treatments effectively increased soil available phosphorus content (1 697.2%-3 455.3%) and total phosphorus content (587.5%-812.5%), while swine manure source treatments mainly increased soil alkali-hydro nitrogen content (286.6%-311.3%) and total nitrogen content (326.4%-373.6%). Livestock manure applications, especially the composted manure, increased soil DOM content (60.3%-227.8%), among which the swine manure source treatments had a better effect on chromophoric dissolved organic matter content (118.1%-231.7%). In contrast, the chicken manure source treatments focused on increasing soil fluorescent dissolved organic matter (FDOM) content (293.4%-834.9%). For FDOM characteristic indexes, the biological index of manure application treatments was lower than that under CK (33.2%-39.2%), but the humification index was higher than that under CK (40.3%-43.3%). Four fluorescence components were identified with parallel factor analysis. The manure applications treatments mainly enriched the C3 (medium-size humus molecule containing fulvic acid and humic acid) and C4 (large-size humus molecule containing tryptophan) components, which promoted the conversion of protein-like components into humus-like components in FDOM. The maximum fluorescence intensities of the C3 and C4 components were higher in composted manure treatments. The composted chicken manure was more advantageous in increasing microbial community α-diversity, for the soil microbial community richness (Chao 1 index:19 065.6) and diversity (Shannon index: 5.6-6.0) were higher. The microbial community structures vary according to different treatments. The chicken manure source treatments were dominated by the eutrophic taxa Proteobacteria (31.2%-33.0%) and Gemmatimonadetes (4.1%), while the swine manure source treatments were dominated by the oligotrophic and efficient carbon-utilizing taxa Acidobacteria (21.0%-21.6%) and the nitrifying bacterial taxa Nitrospirae (2.6%-3.4%). Positive correlations dominated the co-occurrence networks, and Rhodobacteraceae had the highest number of correlations with other microbes. Redundancy Analysis and optimized random forest model showed that microbial communities were mainly influenced by available potassium and the C3 component of DOM, with a more pronounced response from nitrogen cycle-related microbial groups.【Conclusion】Long-term application of different manure sources mainly led to differences in humic components mediated by nutrients and organic matter input. Composted manure treatments improved the soil organic matter content and the degree of DOM humification. The available nutrients in soil and the humic-like components of DOM were the main factors affecting the structure of the soil microbial community. The response of nitrogen cycle-related microbial groups to these factors was particularly obvious and should be paid attention under long-term application of manure.

Key words: long-term fertilization, manure, crop rotation soil, microbial communities structure, dissolved organic matter

Table 1

Properties of fresh and composted manure"

处理
Treatment
pH 总有机质
Organic matters
(%)
总氮
Total nitrogen content
(%)
总磷
Total phosphorus content
(P2O5%)
总钾
Total potassium content
(K2O%)
甜玉米单茬施用量
Application rate for sweet corn per crop
(t·hm-2)
包菜单茬施用量
Application rate for cabbage per crop
(t·hm-2)
CK - - - - - 0 0
PM 7.39 31.1 2.95 3.65 2.77 13.2 7.68
PMOF 7.13 27.4 2.92 3.29 2.73 13.4 7.77
SM 7.24 50.8 2.31 1.80 0.72 16.8 9.80
SMOF 7.60 36.6 2.21 1.33 0.65 17.6 10.30

Table 2

Three-dimensional fluorescence spectrum parameter description"

参数名称
Parameter name
公式/定义
Equation/definition
参数描述
Parameter description
Fn(355) Ex=355 nm,Em=450 nm的荧光强度
The intensity at 355 nm for excitation (Ex) and 450 nm for emission (Em)
表征DOM荧光强度
Characterise the fluorescence intensity of DOM
荧光指数
Fluorescence index, FI
FI=I470nm/I520nm Ex=370 nm 反映DOM中芳香物质对其荧光强度的贡献率
Reflect the contribution of aromatic substances of DOM to its fluorescence intensity
自生源指数
Biological index, BIX
BIX=I380nm/I430nm Ex=310 nm 指示DOM的生物来源比例
Indicate the proportion of DOM biological sources
腐殖化指数
Humification index, HIX
HIX=∑I435-480nm/(∑I300-345nm+∑I435-480nm)
Ex=254nm
表征DOM的腐殖化程度
Characterise the degree of humification of DOM
r(A/C) 紫外光区类腐殖质荧光峰A与可见区类腐殖质荧光峰C荧光强度比值
Ratio of the fluorescence intensity of humic-like fluorescence peak A in the ultraviolet region to the fluorescence intensity of humic-like fluorescence peak C in the visible region
反映DOM中腐殖化组分发育程度
Reflect the degree of humic components’development of DOM
r(T/C) 类蛋白质荧光峰T与类腐殖质荧光峰C荧光强度比值
Ratio of the fluorescence intensity of protein-like fluorescence peak T to the fluorescence intensity of humic-like fluorescence peak C
评价内源贡献比重
Assess the proportion of endogenous DOM’s contributions

Table 3

Soil chemical properties under different treatments"

处理
Treatment
pH 有机质
Soil organic matter (g·kg-1)
全磷
Total phosphorus (g·kg-1)
全氮
Total nitrogen (g·kg-1)
全钾
Total potassium (g·kg-1)
速效磷
Available phosphorus (mg·kg-1)
碱解氮
Alkaline nitrogen (mg·kg-1)
速效钾
Available potassium (mg·kg-1)
阳离子交换量
Cation exchange capacity (cmol·kg-1)
CK 6.72±0.027 b 11.1±1.69 d 0.40±0.062d 0.72±0.048 d 9.92±0.851 ab 14.1±4.7 d 46.2±7.90 d 28.6±6.65 c 2.43±0.030 d
PM 7.24±0.050 a 24.7±5.31 c 2.75±0.667 bc 1.80±0.401 c 8.81±0.380 ab 253.0±14.1 b 88.7±6.76 c 365.0±32.2 b 5.37±0.805 c
PMOF 7.45±0.035 a 34.8±0.26 b 3.65±0.619 b 2.60±0.067 b 10.20±1.690 a 501.0±23.0 a 142.0±0.718 b 711.0±115 a 6.50±0.407 b
SM 7.22±0.014 a 46.0±3.05 a 5.12±0.080 a 3.07±0.381 ab 8.66±0.344 ab 268.0±2.6 b 179.0±22.6 a 70.0±22.6 c 5.81±2.030 b
SMOF 6.55±0.356 b 50.7±4.71 a 1.99±0.181 c 3.41±0.361 a 7.27±1.170 b 130.0±7.4 c 190.0±20.4 a 51.0±7.81 c 8.06±0.140 a

Table 4

Soil dissolved organic carbon(DOC) content, ultraviolet-visible spectral characteristics, and fluorescence spectral parameters of soil DOM under different treatments"

处理
Treatment
溶解性有机碳
DOC
(mg·kg-1)
CDOM吸收系数
α(355)
FDOM荧光
强度
Fn(355)
CDOM特征参数
CDOM characteristic parameter
FDOM特征参数
FDOM characteristic parameter
SUVA254 SUVA260 SR 自生源指数
BIX
荧光指数
FI
腐殖化指数
HIX
CK 106±13.1 d 5.4±1.22 b 412.8±59.5 c 3.89±0.633 b 3.78±0.597 a 0.595±0.076 a 0.737±0.192 a 1.47±0.099 a 0.669±0.148 b
PM 170±4.4 c 11.5±1.42 a 1621.0±166.9 b 7.30±1.570 a 6.52±1.680 a 0.598±0.124 a 0.477±0.002 b 1.59±0.008 a 0.936±0.032 a
PMOF 348±17.8 a 10.8±1.45 a 3850.0±436.3 a 4.09±0.121 b 3.88±0.144 a 0.578±0.032 a 0.485±0.004 b 1.55±0.008 a 0.962±0.006 a
SM 217±15.0 b 14.9±3.08 a 1511.0±214.5 b 5.91±1.660 ab 5.48±1.390 a 0.360±0.236 a 0.477±0.036 b 1.53±0.016 a 0.938±0.037 a
SMOF 215±23.9 b 14.9±1.27 a 1975.0±135.6 b 6.61±1.150 ab 6.35±1.080 a 0.426±0.122 a 0.452±0.007 b 1.47±0.014 a 0.947±0.004 a

Fig. 1

Fluorescent components of DOM under no manure treatment (a, b) and manure fertilizing treatments (c, d) identified by PARAFAC method C1 was characterized as fulvic acid-like component, C2 was characterized as amino acid-like component, C3 was characterized as humic-like component containing fulvic and humic acids, and C4 was characterized as humic-like component containing amino acid. The same as below"

Fig. 2

Fmax values (A) and relative contribution rates (B) of different soil DOM components, and the distribution of r(A/C) and r(T/C) (C) r(A/C), Ratio of fluorescence intensity of humus-like fluorescence peak A in the ultraviolet region to humus-like fluorescence peak C in the visible region; r(T/C), Ratio of fluorescence intensity of protein-like fluorescence peak T to that of humus-like fluorescence peak C in the visible region. Different lowercase letters marked indicate significant differences between treatments (P<0.05). The same as below"

Fig. 3

Relative abundance distribution of top 10 microbial taxa in soils under different treatments at kingdom(a), phylum(b), and family(c) levels"

Fig. 4

Box plots of the Chao1 index (a, d, g), Shannon index (b, e, h) and beta diversity (c, f, i) of soil microbial community. (a), (b) and (c) were grouped according to experimental treatments. (d), (e) and (f) were grouped according to fresh manure (M) /composted manure (OF). (g), (h) and (i) were grouped according to chicken (P) and swine (S) sources. The solid and dashed lines of the box plot represent the median and average, respectively. The upper and lower boundaries of the box plot represent the 75% and 25% quartiles, respectively. The box plot's upper and lower edges represent 95% and 5% percentiles, respectively"

Fig. 5

Co-occurring network diagrams for soil microbial community species across all soil samples at phylum (a) and family (b) level One node represents one phylum or family. The red line represents the positive correlation, and the green line represents the negative correlation. The thicker line indicates the larger Spearman correlation value (r), and the node size is assigned according to the relative abundance"

Fig. 6

RDA analysis of the effect of environmental factors on microbial composition (a); RDA analysis of environmental factor weights (b); Random forest (RF) analysis identifies the key influencing factor of the soil microbial community and its correlation with the top 20 species at the genus level (c) AP: Available phosphorus, BIX: Biological index, FI: Fluorescence index, TK: Total potassium, TN: Total nitrogen, AK: Available potassium, DOC: Dissolved oranic matter, AN: Alkali-hydrolyzable nitrogen, SR: Spectral slope ratio. * P<0.05"

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