Scientia Agricultura Sinica ›› 2013, Vol. 46 ›› Issue (8): 1725-1735.doi: 10.3864/j.issn.0578-1752.2013.08.023

• VETERINARY SCIENCE • Previous Articles     Next Articles

Cloning and Bioinformatics Analysis of Full-Length cDNA Sequence of YAP1 Gene in Sheep

 SUN  Wei, LI  Da, SU  Rui, MA  Yue-Hui, GUAN  Wei-Jun, ZHANG  You-Fa, CHEN  Ling, WU  Wen-Zhong, ZHOU  Hong   

  1. 1.Animal Science and Technology College, Yangzhou University, Yangzhou 225009, Jiangsu
    2. Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193
    3.Animal Science and Veterinary Medicine Bureau of Suzhou, Suzhou 215128, Jiangsu
    4.Forestation, Herding, Fishing Bureau of Suining Country of Xuzhou, Suining 221200, Jiangsu
  • Received:2012-12-24 Online:2013-04-15 Published:2013-03-08

Abstract: 【Objective】 There was no report on YAP1 gene and its protein in the past days, this study was carried out in order to clone the YAP1 cDNA in sheep and provide a basic foundation for the study of YAP1 genetic characters , as well as analyze its tissue different level expression patterns. 【Method】 Hu sheep was regarded as the research object, and the full-length cDNA sequence of the YAP1 gene was acquired from the longissimus dorsi muscle by RT-PCR and RACE, and the sequence was analyzed in depth by bioinformatics method. 【Result】 The full-length cDNA sequence of the YAP1 gene was successfully obtained from Hu sheep longissimus dorsi muscle. Bioinformatics technology was successfully used to analyze the YAP1 homology among different species, transmembrane region of YAP1 sequence, subcellular localization, hydrophilic, potential signal peptide cleavage sites, glycosylation sites, phosphorylationlocus, product function prediction analyisis, YAP1 secondary structure and teriary structure.【Conclusion】The full-length of YAP1 gene was 1 712bp, including 1 212bp coding sequence encoding 403 amino acids. The homology analysis found that the nucleotide sequence and amino acid sequence of sheep YAP1 gene share the highest 78.77% and 92.51% identity with the Cricetulus YAP1 while there was no large difference between Human and Chimpanzee. The amino acid sequence analysis revealed that the YAP1 gene of sheep encoded water-soluble protein and its relative molecular weight was 44079.0 Da, isoelectric point was 4.91, was a kind of hydrophilic non-transmembrane protein. Subcellular localization of YAP1 was in the mucleus, and it did not belong to the secreted protein. The YAP1 protein contained 33 phosphorylation sites, 7 glycosylation sites and 2 WW domain. The secondary structure of YAP1 was mainly composed of random coil. The tertiary structure of domain area of YAP1 protein showed a forniciform helix structure. Forecast YAP1 had a key role in regulatory functions process. The above studies have laid an information foundation for further study of the YAP1 gene function in the sheep muscle development process.

Key words: YAP1 , clone , bioinformatics analysis , expression

[1]Zhao B, Li L, Lei Q Y, Guan K L. The Hippo-YAP pathway in organ size control and tumorigenesis: an updated version. Genes and Development, 2010, 24: 862-874.

[2]Sudol M, Harvey K F. Modularity in the Hippo signaling pathway. Trends in Biochemical Sciences, 2010, 35(11): 627-633.

[3]Yin M X, Zhang L. Hippo signaling: A hub of growth control, tumor suppression and pluripotency maintenance. Journal of Genetics and Genomics, 2011, 38: 471-481.

[4]周洲, 朱金水. Hippo 通路及YAP基因研究的新进展. 现代肿瘤医学, 2011, 19(6): 1241-1244.

Zhou Z, Zhu J S. Research advances on Hippo signal pathway and YAP gene. Modern Oncology, 2011, 19(6): 1241-1244.(in Chinese)

[5]Zhang J M, Ji J Y, Yu M, Overholtzer M, Smolen G A, Wang R, Brugge J S, Dyson N J, Haber D A. YAP-dependent induction of am-phiregulin identifies a non-cell-autonomous component of the Hippo pathway. Nature Cell Biology, 2009, 11(12): 1444-1450.

[6]李宁, 肖虹, 郑绘霞, 万慧丽, 赵玉泽, 梁建芳. YAP蛋白在膀胱尿路上皮肿瘤中的表达及临床意义. 山西医科大学学报, 2011, 42(5): 383-386.

Li N, Xiao H, Zheng H X, Wan H L, Zhao Y Z, Liang J F. The expression of Yes-associated protein in urothelial tumors of bladder and its clinical significance. Journal of Shanxi Medicine University, 2011, 42(5): 383-386. (in Chinese)

[7]张靖, 朱金水. Hippo-YAP信号通路与胃癌相关性研究. 国际消化病杂志, 2011, 31(4): 207-215.

Zhang J, Zhu J S. Research on the relationship between Hippo-YAP signaling pathway and gastric cancer. International Journal of Digestive Diseases, 2011, 31(4): 207-215.(in Chinese)

[8]赵修民, 王德林.YAP基因表达与肿瘤的关系. 广东医学, 2011, 32(12): 1628-1629.

Zhao X M, Wang D L. Research on the relationship between the expression of YAP and tumor. GuangDong Medical Journal, 2011, 32(12): 1628-1629.(in Chinese)

[9]刘丛丛, 梁建芳, 郑绘霞, 肖虹, 李宁, 程彩霞, 王宏坤, 武丽娜, 张民, 赵玉泽. YAP在结直肠腺癌组织中的表达及意义. 中国药物与临床, 2011, 11(1): 23-26.

Liu C C, Liang J F, Zheng H X, Xiao H, Li N, Cheng C X, Wang H K, Wu L N, Zhang M, Zhao Y Z. Expression and clinical significance of YAP in colorectal adenocarcinoma. Chinese Remedies and Clinics, 2011, 11(1): 23-26.(in Chinese)

[10]刘玉, 夏立平, 郑武平. YAP在乳腺癌中的表达及其临床意义. 海南医学院学报, 2010, 16(6): 699-704.

Liu Y, Xia L P, Zheng W P. Expression and clinical significance of YAP in breast carcinoma tissues. Journal of Hainan Medical University, 2010, 16(6): 699-704.(in Chinese)

[11]Zhao B, Lei Q Y, Guan K L.The Hippo-YAP pathway: new connections between regulation of organ size and cancer. Current Opinion in Cell Biology, 2008, 20: 638-646.

[12]Yeku O, Frohman M A. Rapid Amplification of cDNA Ends (RACE). Methods in Molecular Biology, 2011, 703(1): 107-122.

[13]Yokoyama T, Osada H, Murakami H, Tatematsu Y, Taniguchi T, Kondo Y, Yatabe Y, Hasegawa Y, Shimokata K, Horio Y, Hida T, Sekido Y. YAP1 is involved in mesothelioma development and negatively regulated by Merlin through phosphorylation. Carcinogenesis, 2008, 29(11): 2139-2146.

[14]Yagi R, Chen L F, Shigesada K, Murakami Y, Yoshiakilto. A WW domain-containing Yes-associated protein(YAP) is a novel transcriptional co-activator. The EMBO Journal, 1999, 18(9): 2551-2562.

[15]Sudol M. Yes-associated protein (YAP65) is a proline-rich phosphoprotein that binds to the SH3 domain of the Yes protooncogene product. Oncogene, 1994, 9: 2145-2152.

[16]Garnier L, Wills J W, Verderame M F, Sudol M. WW domains and retroviral budding. Nature, 1996, 381: 744-745.

[17]Wang K, Degerny C, Xu M, Yang X J. YAP, TAZ, and Yorkie: a conserved family of signal-responsive transcriptional coregulators in animal development and human disease. Biochemistry and Cell Biology, 2009, 87 : 77-91.

[18]Basu S, Totty N F, Irwin M S, Sudol M, Downward J, Akt phosphorylates the Yes-associated protein, YAP, to induce interaction with 14-3-3 and attenuation of p73-mediated apoptosis. Molecular Cell, 2003, 11: 11-23.

[19]Zhao B, Ye X, Yu J, Li L, Li W, Li S, Lin J D, Wang C Y, Chinnaiyan A M, Lai Z C, Guan K L. TEAD mediates YAP-dependent gene induction and growth control. Genes & Development, 2008, 22: 1962-1971.

[20]Camargo F D, Gokhale S, Johnnidis J B, Fu D, Bell G W, Jaenisch R, Brummelkamp T R. YAP1 increases organ size and expands undifferentiated progenitor cells. Current Biology, 2007, 17: 2054-2060.

[21].Watt K I, Judson R, Medlow P, Reid K, Kurth T B, Burniston J G, Ratkevicius A, Bari C D, Wackerhage H. Yap is a novel regulator of C2C12 myogenesis. Biochemical and Biophysical Research Communications, 2010, 393: 619-624.

[22]Gise A V, Lin Z Q, Schlegelmilch K, Honor L B, Pan G M, Buck J N, Ma Q, Ishiwata T, Zhou B, Camargo F D, Pu W T. YAP1, the nuclear target of Hippo signaling, stimulates heart growth through cardiomyocyte proliferation but not hypertrophy. Proceedings of the National Academy of Sciences, 2012, 109(7): 2394-2399.

[23].Schlegelmich K, Mohseni M, Kirak O, Pruszak J, Renato J, Rodriguez, Zhou D W, Kreger B T, Vasioukhin V, Avruch J, Brummelkamp T R, Camargo F D. Yap1 act downstream of α-Catenin to control epidermal proliferation. Cell, 2011, 144 (5): 782-795.

[24].Camargo F D, Gokhale S, Johnnidis J B, Fu D D, Bell G W, Jaenisch R, Brummelkamp T R. YAP1 increases organ size and expands undifferentiated progenitor cells. Current Biology, 2007, 17(23): 2054-2060.

[25]Wang W Q, Huang J, Chen J J. Angiomotin-like Proteins Associate with and negatively regulate YAP1. Journal of Biological Chemistry, 2010, 286: 4364-4370.

[26]Fernandez-L A, Northcott P A, Dalton J, Fraga C, Ellison D, Angers S, Taylor M D, Kenney A M. YAP1 is amplified and up-regulated in hedgehog-associated medulloblastomas and mediates Sonic hedgehog-driven neural precursor proliferation. Current Issue, 2009, 23: 2729-2741.
[1] SHEN LongXian, WANG LiTing, HE Ke, DU Xue, YAN FeiFei, CHEN WeiHu, LÜ YaoPing, WANG Han, ZHOU XiaoLong, ZHAO AYong. Effects of Melatonin and Nicotinamide Mononucleotides on Proliferation of Skeletal Muscle Satellite Cells in Goose [J]. Scientia Agricultura Sinica, 2023, 56(2): 391-404.
[2] ZHANG KeKun,CHEN KeQin,LI WanPing,QIAO HaoRong,ZHANG JunXia,LIU FengZhi,FANG YuLin,WANG HaiBo. Effects of Irrigation Amount on Berry Development and Aroma Components Accumulation of Shine Muscat Grape in Root-Restricted Cultivation [J]. Scientia Agricultura Sinica, 2023, 56(1): 129-143.
[3] MO WenJing,ZHU JiaWei,HE XinHua,YU HaiXia,JIANG HaiLing,QIN LiuFei,ZHANG YiLi,LI YuZe,LUO Cong. Functional Analysis of MiZAT10A and MiZAT10B Genes in Mango [J]. Scientia Agricultura Sinica, 2023, 56(1): 193-202.
[4] GU LiDan,LIU Yang,LI FangXiang,CHENG WeiNing. Cloning of Small Heat Shock Protein Gene Hsp21.9 in Sitodiplosis mosellana and Its Expression Characteristics During Diapause and Under Temperature Stresses [J]. Scientia Agricultura Sinica, 2023, 56(1): 79-89.
[5] LI ShiJia,LÜ ZiJing,ZHAO Jin. Identification of R2R3-MYB Subfamily in Chinese Jujube and Their Expression Pattern During the Fruit Development [J]. Scientia Agricultura Sinica, 2022, 55(6): 1199-1212.
[6] LAI ChunWang, ZHOU XiaoJuan, CHEN Yan, LIU MengYu, XUE XiaoDong, XIAO XueChen, LIN WenZhong, LAI ZhongXiong, LIN YuLing. Identification of Ethylene Synthesis Pathway Genes in Longan and Its Response to ACC Treatment [J]. Scientia Agricultura Sinica, 2022, 55(3): 558-574.
[7] SHU JingTing,SHAN YanJu,JI GaiGe,ZHANG Ming,TU YunJie,LIU YiFan,JU XiaoJun,SHENG ZhongWei,TANG YanFei,LI Hua,ZOU JianMin. Relationship Between Expression Levels of Guangxi Partridge Chicken m6A Methyltransferase Genes, Myofiber Types and Myogenic Differentiation [J]. Scientia Agricultura Sinica, 2022, 55(3): 589-601.
[8] ZHAO HuiTing,PENG Zhu,JIANG YuSuo,ZHAO ShuGuo,HUANG Li,DU YaLi,GUO LiNa. Expression and Binding Properties of Odorant Binding Protein AcerOBP7 in Apis cerana cerana [J]. Scientia Agricultura Sinica, 2022, 55(3): 613-624.
[9] JIANG QiQi,XU JianJian,SU Yue,ZHANG Qi,CAO Peng,SONG ChenHu,LI ZhongAn,SONG Zhen. Construction and Application of Infectious Clone of Citrus Yellow Mosaic Virus [J]. Scientia Agricultura Sinica, 2022, 55(24): 4840-4850.
[10] LI YuZe,ZHU JiaWei,LIN Wei,LAN MoYing,XIA LiMing,ZHANG YiLi,LUO Cong,HUANG Gui Xiang,HE XinHua. Cloning and Interaction Protein Screening of RHF2A Gene from Xiangshui Lemon [J]. Scientia Agricultura Sinica, 2022, 55(24): 4912-4926.
[11] GUO ShaoLei,XU JianLan,WANG XiaoJun,SU ZiWen,ZHANG BinBin,MA RuiJuan,YU MingLiang. Genome-Wide Identification and Expression Analysis of XTH Gene Family in Peach Fruit During Storage [J]. Scientia Agricultura Sinica, 2022, 55(23): 4702-4716.
[12] ZHANG Qi,DUAN Yu,SU Yue,JIANG QiQi,WANG ChunQing,BIN Yu,SONG Zhen. Construction and Application of Expression Vector Based on Citrus Leaf Blotch Virus [J]. Scientia Agricultura Sinica, 2022, 55(22): 4398-4407.
[13] HAO Yan,LI XiaoYing,YE Mao,LIU YaTing,WANG TianYu,WANG HaiJing,ZHANG LiBin,XIAO Xiao,WU JunKai. Characteristics of Volatile Components in Peach Fruits of 21shiji and Jiucui and Their Hybrid Progenies [J]. Scientia Agricultura Sinica, 2022, 55(22): 4487-4499.
[14] KANG Chen,ZHAO XueFang,LI YaDong,TIAN ZheJuan,WANG Peng,WU ZhiMing. Genome-Wide Identification and Analysis of CC-NBS-LRR Family in Response to Downy Mildew and Powdery Mildew in Cucumis sativus [J]. Scientia Agricultura Sinica, 2022, 55(19): 3751-3766.
[15] YuXia WEN,Jian ZHANG,Qin WANG,Jing WANG,YueHong PEI,ShaoRui TIAN,GuangJin FAN,XiaoZhou MA,XianChao SUN. Cloning, Expression and Anti-TMV Function Analysis of Nicotiana benthamiana NbMBF1c [J]. Scientia Agricultura Sinica, 2022, 55(18): 3543-3555.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!