Scientia Agricultura Sinica ›› 2022, Vol. 55 ›› Issue (24): 4840-4850.doi: 10.3864/j.issn.0578-1752.2022.24.005

• PLANT PROTECTION • Previous Articles     Next Articles

Construction and Application of Infectious Clone of Citrus Yellow Mosaic Virus

JIANG QiQi(),XU JianJian(),SU Yue,ZHANG Qi,CAO Peng,SONG ChenHu,LI ZhongAn(),SONG Zhen()   

  1. Citrus Research Institute, Southwest University/National Citrus Engineering Research Center, Chongqing 400712
  • Received:2022-07-18 Accepted:2022-09-13 Online:2022-12-16 Published:2023-01-04
  • Contact: ZhongAn LI,Zhen SONG E-mail:j13206107876@163.com;swuxujj@foxmail.com;songzhen@cric.cn;lizhongan@cric.cn

Abstract:

【Objective】An infectious clone of citrus yellow mosaic virus (CYMV) was constructed to lay a foundation for further study of its molecular characteristics and pathogenic mechanism. 【Method】The amplified CYMV genomic sequence segments were recombined with the ternary expression vector pCY using In-Fusion homologous recombination technology, and a 1.4-fold full-length genomic DNA clone of the virus was constructed and sequenced. The obtained clones were inoculated onto seedlings of Eureka lemon by Agrobacterium-mediated vacuum infiltration (AVI), and their infectivity was identified by molecular detection, presentation of symptoms and virus particles, and re-grafting determination. The obtained infectious clones were used to inoculate different citrus varieties and herbs, and the infection rate was determined by RT-PCR and the various symptoms of different citrus varieties after infection were observed. Mutants of the infectious clones with ORFⅠand ORFⅡ replaced by green fluorescent protein gene (gfp), respectively were constructed, and subjected to infectivity analysis. 【Result】Seven clones of 1.4-fold CYMV genome-length DNA were obtained by In-Fusion homologous recombination technology. Among them, CYMV-3 was 90%-100% identical to the corresponding genomic nucleotide sequences of nine CYMV isolates registered in GenBank, and had the highest homology with CYMV-SO isolate (AF347695) and was clustered on the same branch of the genetic evolutionary tree. The results of infectivity identification showed that four out of the 14 Eureka lemon plants inoculated with CYMV-3 were positive by RT-PCR detection, and punctate chlorotic symptoms were observed. DNA was extracted from the new systemic leaves of the infected plant and the expected specific fragments covering the full length of the CYMV genome were obtained by PCR amplification. CYMV-3 infected plants with symptoms were used as the virus source to graft and inoculate rough lemon seedlings, and CYMV specific bands could be detected by RT-PCR at 90 dpi. New leaves of CYMV-3 infected plants with symptoms were taken for fixation and sectioning for electron microscopy and baculovirus particles of about 130 nm × 30 nm were observed, indicating that CYMV-3 was a CYMV infectious clone. Ten and five citrus varieties were inoculated by CYMV-3 via Agrobacterium-mediated vacuum infiltration and injection, respectively, and were tested by RT-PCR. The results showed that the infection rate of the former was 11.11%-100.00% and the latter was 63.16%-90.00%. Some citrus varieties appeared CYMV symptoms such as yellowing, mosaic and yellowing patches. Nicotiana benthamiana, Zea mays, Vigna unguiculata and Sorghum bicolor were inoculated by CYMV-3 via Agrobacterium -mediated injection, and only S. bicolor plants were detected to be positive in RT-PCR detection, and chlorotic strips appeared along the veins of the systemic leaves, indicating that CYMV can infect S. bicolor. The mutants of CYMV-3 with ORFⅠand ORFⅡ replaced by gfp, respectively, were constructed and inoculated onto rough lemons by Agrobacterium-mediated injection. All the inoculated plants were negative by RT-PCR detection and showed no obvious symptoms. 【Conclusion】The infectious clone of CYMV was successfully constructed and could infected citrus plants efficiently via Agrobacterium-mediated injection, resulting different symptoms in different varieties.

Key words: citrus yellow mosaic virus (CYMV), infectious clone, Agrobacterium-mediated inoculation, mutant

Table 1

Construction of CYMV infectious clone and common PCR detection primers"

Fig. 1

Construction scheme of CYMV clone"

Fig. 2

PCR amplification of CYMV genome segments"

Fig. 3

Detection of CYMV clone by PCR"

Fig. 4

Symptoms of Eureka lemon inoculated with CYMV-3"

Fig. 5

Phylogenetic analysis of CYMV-3 and other available badnaviruses"

Fig. 6

PCR amplification of CYMV full-length genome in citrus infected by CYMV-3"

Fig. 7

RT-PCR detection of rough lemon inoculated with CYMV-3 by grafting"

Fig. 8

Virus particles observation of citrus infected by CYMV-3"

Fig. 9

Symptoms of different citrus varieties inoculated with CYMV-3"

Fig. 10

RT-PCR detection of S. bicolor inoculated with CYMV-3"

Fig. 11

Symptoms on S. bicolor inoculated with CYMV-3"

Fig. 12

Detection of CYMV mutants by PCR"

[1] HUANG Q, HARTUNG J S. Cloning and sequence analysis of an infectious clone of citrus yellow mosaic virus that can infect sweet orange via Agrobacterium-mediated inoculation. Journal of General Virology, 2001, 82(10): 2549-2558.
doi: 10.1099/0022-1317-82-10-2549
[2] BORAH B K, JOHNSON A M A, SAI GOPAL D V R, DASGUPYA I. Sequencing and computational analysis of complete genome sequences of citrus yellow mosaic badna virus from acid lime and pummelo. Virus Genes, 2009, 39(1): 137-140.
doi: 10.1007/s11262-009-0367-9 pmid: 19444599
[3] MOTGARE M, DHAR A K, KOKANE A, WARGHANE A, KOKANE S, SHARMA A K, REDDY M K, GHOSH D K. Quantitative distribution of citrus yellow mosaic badnavirus in sweet orange (Citrus sinensis) and its implication in developing disease diagnostics. Journal of Virological Methods, 2018, 259: 25-31.
doi: S0166-0934(18)30208-8 pmid: 29859966
[4] AHLAWAT Y S, PANT R P, LOCKHART B E L, SRIVASTAVA M, CHAKRABORTY N K, VARMA A. Association of a badnavirus with citrus mosaic disease in India. Plant Disease, 1996, 80(5): 590-592.
doi: 10.1094/PD-80-0590
[5] GADDAM S A, KOTAKAD V S, REDDY M N, SAIGOPAL D V R. Survey and indexing of citrus yellow mosaic virus infecting citrus species in rayalaseema region of Andhra Pradesh. Archives of Applied Science Research, 2012, 4(4): 1821-1824.
[6] GUPTA K N, BARANWAL V K, PRASANNA B K, SINGH J, HAQ Q M R, GOPAL K. Genome sequencing, comparison and phylogenetic analysis of citrus yellow mosaic virus isolates originating from different citrus species in India. International Journal of Virology, 2009, 5(4): 143-153.
doi: 10.3923/ijv.2009.143.153
[7] BARANWAL V K, MAJUMDER S, AHLAWAT Y S, SINGH R P. Sodium sulphite yields improved DNA of higher stability for PCR detection of citrus yellow mosaic virus from citrus leaves. Journal of Virological Methods, 2003, 112: 153-156.
pmid: 12951224
[8] GHOSH D K, BHOSE S, MUKHERJEE K, AGLAVE B, WARGHANE A J, MOTGHARE M, BARANWAL V K, DHAR A K. Molecular characterization of citrus yellow mosaic badnavirus (CMBV) isolates revealed the presence of two distinct strains infecting citrus in India. Phytoparasitica, 2014, 42(5): 681-689.
doi: 10.1007/s12600-014-0409-2
[9] ANTHONY JOHNSON A M, SAI GOPAL D V R, SUDHAKAR C, DASGUPTA I. Citrus yellow mosaic badnavirus infecting Citrus sp.: A threat to the citrus industry and a quarantine issue. Journal of General Plant Pathology, 2017, 83(2): 57-65.
doi: 10.1007/s10327-017-0702-2
[10] BAKER R, CAFFIER D, CHOISEUL J W, DE CLERCQ P. Pest risk assessment made by France on citrus yellow mosaic virus or citrus mosaic badnavirus considered by France as harmful in the French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion-Scientific Opinion of the Panel on Plant Health. The EFSA Journal, 2008, 686: 1-16.
[11] AHLAWAT Y S, VARMA A, PANT R P, SHUKLA A, LOCKHART B E L. Partial characterization of a badnavirus associated with citrus yellow mosaic disease in India//Proceedings of the 13th Conference of the International Organization of Citrus Virologists. California: University of California Press, 1996: 208-217.
[12] HERZOG E, GUERRA-PERAZA O, HOHN T. The rice tungro bacilliform virus gene II product interacts with the coat protein domain of the viral gene III polyprotein. Journal of Virology, 2000, 74(5): 2073-2083.
pmid: 10666237
[13] VADLAMUDI T, KALDIS A, DIVI V S G, PATIL B L, VOLOUDAKIS A E. The citrus yellow mosaic badnavirus ORFI functions as a RNA- silencing suppressor. Virus Genes, 2021, 57(5): 469-473.
doi: 10.1007/s11262-021-01863-8
[14] KING A, ADAMS M J, CARSTENS E B, LEFKOWITZ E J. Virus Taxonomy: Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, 2012.
[15] ANTHONY JOHNSON A M, BORAH B K, SAI GOPAL D V R, DASGUPTA I. Analysis of full-length sequences of two citrus yellow mosaic badnavirus isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. Osbeck (Sweet Orange) from a nursery in India. Virus Genes, 2012, 45(3): 600-605.
doi: 10.1007/s11262-012-0808-8
[16] HOHN T, ROTHNIE H. Plant pararetroviruses: Replication and expression. Current Opinion in Virology, 2013, 3(6): 621-628.
doi: 10.1016/j.coviro.2013.08.013 pmid: 24063990
[17] BOISSINOT S, PICHON E, SORIN C, PICCINI C, SCHEIDECKER D, ZIEGLER-GRAFF V, BRAULT V. Systemic propagation of a fluorescent infectious clone of a polerovirus following inoculation by agrobacteria and aphids. Viruses, 2017, 9(7): 166.
doi: 10.3390/v9070166
[18] 张丽, 王德富, 裴燕妮, 咸珅, 牛颜冰. 大豆花叶病毒半夏分离物侵染性克隆构建及鉴定. 生物工程学报, 2020, 36(5): 949-958.
ZHANG L, WANG D F, PEI Y N, XIAN S, NIU Y B. Construction and characterization of an infectious clone of soybean mosaic virus isolate from Pinellia ternate. Chinese Journal of Biotechnology, 2020, 36(5): 949-958. (in Chinese)
[19] SUN K, ZHAO D Y, LIU Y, HUANG C J, ZHANG W, LI Z H. Rapid construction of complex plant RNA virus infectious cDNA clones for agroinfection using a yeast-E. coli-Agrobacterium shuttle vector. Viruses, 2017, 9(11): 332.
doi: 10.3390/v9110332
[20] CUI T T, BIN Y, YAN J H, MEI P Y, LI Z A, ZHOU C Y, SONG Z. Development of infectious cDNA clones of citrus yellow vein clearing virus using a novel and rapid strategy. Phytopathology, 2018, 108(10): 1212-1218.
doi: 10.1094/PHYTO-02-18-0029-R pmid: 29726761
[21] 许建建, 王艳娇, 段玉, 马志敏, 宾羽, 周常勇, 宋震. 柑橘脉突病毒基因组全长cDNA克隆及其侵染性鉴定. 中国农业科学, 2020, 53(18): 3707-3715.
XU J J, WANG Y J, DUAN Y, MA Z M, BIN Y, ZHOU C Y, SONG Z. Construction of genome-length cDNA of citrus vein enation virus and identification of its infectivity. Scientia Agricultura Sinica, 2020, 53(18): 3707-3715. (in Chinese)
[22] 崔甜甜. 柑橘黄化脉明病毒和柑橘叶斑驳病毒的侵染性克隆构建[D]. 重庆: 西南大学, 2018.
CUI T T. Construction of infectious cDNA clones of citrus yellow vein clearing virus and citrus leaf blotch virus[D]. Chongqing: Southwest University, 2018. (in Chinese)
[23] 王艳娇. 柑橘脉突病毒侵染性克隆构建及其基因沉默抑制子鉴定[D]. 重庆: 西南大学, 2017.
WANG Y J. Construction of infectious cDNA clones and identification of gene silencing suppressor of citrus vein enation virus[D]. Chongqing: Southwest University, 2017. (in Chinese)
[24] CHANG L, ZHANG Z, YANG H, LI H, DAI H. Detection of strawberry RNA and DNA viruses by RT-PCR using total nucleic acid as a template. Journal of Phytopathology, 2007, 155(7/8): 431-436.
doi: 10.1111/j.1439-0434.2007.01254.x
[25] BHAT A I, HOHN T, SELVARAJAN R. Badnaviruses: The current global scenario. Viruses, 2016, 8(6): 177.
doi: 10.3390/v8060177
[26] DAN Y, ZHANG S, ZHONG H, YI H, SAINZ M B. Novel compounds that enhance Agrobacterium-mediated plant transformation by mitigating oxidative stress. Plant Cell Reports, 2015, 34(2): 291-309.
doi: 10.1007/s00299-014-1707-3
[27] DAKSHINAMURTI V, REDDY G S. Non-citrus host for citrus mosaic virus. Current Science, 1976, 45(9): 352.
[28] APARNA G S, GOPAL K, SUBBAIAH K V, REDDY M N, SREENIVASULU M. First report of herbaceous hosts for citrus yellow mosaic badna virus from India. Plant Disease, 2002, 86(8): 920.
[29] CHENG C P, LOCKHART B E, OLSZEWSKI N E. The ORF I and II proteins of commelina yellow mottle virus are virion-associated. Virology, 1996, 223(2): 263-271.
pmid: 8806562
[1] LI ZhengGang,TANG YaFei,SHE XiaoMan,YU Lin,LAN GuoBing,HE ZiFu. Molecular Characteristics and Pathogenicity Analysis of Youcai Mosaic Virus Guangdong Isolate Infecting Radish [J]. Scientia Agricultura Sinica, 2022, 55(14): 2752-2761.
[2] YUAN JingLi,ZHENG HongLi,LIANG XianLi,MEI Jun,YU DongLiang,SUN YuQiang,KE LiPing. Influence of Anthocyanin Biosynthesis on Leaf and Fiber Color of Gossypium hirsutum L. [J]. Scientia Agricultura Sinica, 2021, 54(9): 1846-1855.
[3] ZHENG Wei,SHI Zheng,LONG Mei,LIAO YunCheng. Photosynthetic and Physiological Characteristics Analysis of Yellow- Green Leaf Mutant in Wheat of Jimai5265yg [J]. Scientia Agricultura Sinica, 2021, 54(21): 4539-4551.
[4] ZHANG Li,TANG YaFei,LI ZhengGang,YU Lin,LAN GuoBing,SHE XiaoMan,HE ZiFu. Molecular Characteristic of Squash Leaf Curl China Virus (SLCCNV) Infecting Cucurbitaceae Crops in Guangdong Province [J]. Scientia Agricultura Sinica, 2021, 54(19): 4097-4109.
[5] ZHANG Shuo,ZHI Hui,TANG ChanJuan,LUO MingZhao,TANG Sha,JIA GuanQing,JIA YanChao,DIAO XianMin. Cytological Characters Analysis and Low-Resolution Mapping of Stripe-Leaf MutantA36-S in Foxtail Millet [J]. Scientia Agricultura Sinica, 2021, 54(14): 2952-2964.
[6] LI FeiFei,WANG BeiBei,LAI YingFang,YANG FeiYing,YOU MinSheng,HE WeiYi. Knockout of Single Allele of fl(2)d Significantly Decreases the Fecundity and Fertility inPlutella xylostella [J]. Scientia Agricultura Sinica, 2021, 54(14): 3029-3042.
[7] LI ZhaoWei,LING DongLan,SUN CongYing,ZENG HuiLing,LIU KaiJi,LAN YingShan,FAN Kai,LIN WenXiong. CRISPR/Cas9 Targeted Editing of OsIAA11 in Rice [J]. Scientia Agricultura Sinica, 2021, 54(13): 2699-2709.
[8] ZHAO Xue,WANG Feng,WANG WenJing,LIU XiaoFeng,BIAN ShiQuan,LIU YanHua,LIU XinMin,DU YongMei,ZHANG ZhongFeng,ZHANG HongBo. Splicing Property Analyses of the NRSE1 Element from Tobacco PR3b mRNA After Fusion Expression with GUS Gene [J]. Scientia Agricultura Sinica, 2020, 53(8): 1524-1531.
[9] KunNeng ZHOU,JiaFa XIA,Peng YUN,YuanLei WANG,TingChen MA,CaiJuan ZHANG,ZeFu LI. Transcriptome Research of Erect and Short Panicle Mutant esp in Rice [J]. Scientia Agricultura Sinica, 2020, 53(6): 1081-1094.
[10] XU JianJian,WANG YanJiao,DUAN Yu,MA ZhiMin,BIN Yu,ZHOU ChangYong,SONG Zhen. Construction of Genome-Length cDNA of Citrus Vein Enation Virus and Identification of Its Infectivity [J]. Scientia Agricultura Sinica, 2020, 53(18): 3707-3715.
[11] Fei QI,Shu LIN,MengFei SONG,MengRu ZHANG,ShuYan CHEN,NaiXin ZHANG,JinFeng CHEN,QunFeng LOU. Screening and Identification of Cucumber Mutant Resistant to Powdery Mildew [J]. Scientia Agricultura Sinica, 2020, 53(1): 172-182.
[12] SUN Hua,MA HongXia,DING MengJun,LI Po,SHI Jie,LIU ShuSen. Construction and Evaluation of ATMT Mutant Library of Fusarium verticillioides [J]. Scientia Agricultura Sinica, 2019, 52(8): 1380-1388.
[13] ZHOU JiaQin,ZHU JunZhao,YANG SiXue,ZHU ZhouJie,YAO Jie,ZHENG WenJuan,ZHU ShiHua,DING WoNa. Cloning and Functional Analysis of a Root Development Related Gene OsKSR7 in Rice (Oryza sativa L.) [J]. Scientia Agricultura Sinica, 2019, 52(5): 777-785.
[14] HUANG ShengCai,WANG Bing,XIE GuoQiang,LIU ZhongLai,ZHANG MeiJuan,ZHANG ShuQing,CHENG XianGuo. Enrichment Profile of GA4 is an Important Regulatory Factor Triggering Rice Dwarf [J]. Scientia Agricultura Sinica, 2019, 52(5): 786-800.
[15] SONG Xi, PU DingFu, TIAN LuShen, YU QingQing, YANG YuHeng, Dai BingBing, ZHAO ChangBin, HUANG ChengYun, DENG WuMing. Genetic Analysis and Characterization of Hormone Response of Semi-Dwarf Mutant dw-1 in Brasscia napus L. [J]. Scientia Agricultura Sinica, 2019, 52(10): 1667-1677.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!