Scientia Agricultura Sinica ›› 2012, Vol. 45 ›› Issue (7): 1235-1245.doi: 10.3864/j.issn.0578-1752.2012.07.001

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS •     Next Articles

Analysis of the Relationship Between Differential Expression of Rice Gene and Heterosis

 ZHANG  Xiao-Meng, XIAO  Ning, ZHANG  Hong-Xi, FENG  Yan-Xia, LIU  Zhi-Xiao, GAO  Yong, DAI  Zheng-Yuan, CHEN  Jian-Min   

  1. 1.扬州大学生物科学与技术学院 江苏扬州 225009
    2.江苏里下河地区农业科学研究所/国家水稻改良中心南京分中心,江苏扬州225007
  • Received:2011-10-08 Online:2012-04-01 Published:2011-11-16

Abstract: 【Objective】The strong and weak heterosis groups in rice were analyzed for investigating the relationship between differential expression patterns of gene and heterosis. 【Method】The differential display-PCR (DD-PCR) technology was used to analyze gene differentially expressed patterns for the nine F1 of Yangdao 6, Minghui 63 and Teqing varieties as male parent in tillering leaves, booting panicles and heading flag leaf. 【Result】At the same growth stage, four kinds of gene differentially expressed patterns, UNP1 (genes specifically expressed in female parent), UNP2 (genes specifically expressed in male parent), UNF1(genes specifically expressed in F1), ABF1 (genes specifically silenced in F1), were presented obvious difference between strong heterosis group G1(Yangdao 6 as male parent) and weak heterosis group G2 (Minghui 63 as male parent). Correlation analysis showed that UNP2 of tillering leaves was significantly positive corelated to yield per plant, and the expressed genes from the paternal were benefit to heterosis. The differentially expressed gene patterns existed obvious difference among three growth stages in the same heterosis group, which indicates that gene expression is spatial and temporal characteristic. Total nineteen differentially expressed gene fragments between G1 and G2 groups were acquired and distributed along one to eleven chromosomes except the twelfth chromosome. The function analysis result showed that they were mainly involved in material synthesis and transport, energy, carbohydrate metabolism pathways and so on. 【Conclusion】 The gene differential expression patterns in strong and weak heterosis group exist significant difference at different growth stages. The phenotypic differences could be reflected by gene differential expression patterns.

Key words: rice, heterosis, expressed patterns

[1]Duvick D N. Heterosis: Feeding people and protecting natural resources//Coors J G, Pandey S. The Genetics and Exploitation of Heterosis in Crops. Madison: American Society of Agronomy Inc, 1997: 19-29.

[2]Bruce A B. The mendelian theory of heredity and augmentation of vigor. Science, 1910, 32: 627-628.

[3]Shull G H. Duplicated genes for capsule form in Bursa bursa pastoris. Molecular Genetics and Genomics, 1914, 12: 97-149.

[4]张启发. 水稻杂种优势的遗传基础研究. 遗传, 1998, 20: 1-2.

Zhang Q F. Progresses in studying the genetic basis of heterosis in rice. Hereditas, 1998, 20: 1-2. (in Chinese)

[5]Cheverud J M, Routman E J. Epistasis and its contribution to genetic variance components. Genetics, 1995, 139: 1455-1461.

[6]Omholt S W, Plahte E, Yehaug L, Xiang K F. Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. Genetics, 2000, 155: 969-980.

[7]Sun Q X, Ni Z F, Liu Z Y. Differential gene expression between wheat hybrids and their parental inbreds in seedling leaves. Euphytica, 1999, 106: 117-123.

[8]Bao J Y, Lee S, Chen C, Zhang X Q, Zhang Y, Liu S Q, Clark T, Wang J, Cao M L, Yang H M, Wang S M, Yu Y J. Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiology, 2005, 138: 121.

[9]Song S H, Qu H Z, Chen C, Hu S N, Yu J. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa L.) parental lines based on SAGE data. BMC Plant Biology, 2007, 7(49): 1-15.

[10]Xiong L Z, Yang G P, Xu C G, Zhang Q F, Maroof M A S. Relationships of differential gene expression in leaves with heterosis and heterozygosity in a rice diallel cross. Molecular Breeding, 1998, 4: 129-136.

[11]王章奎, 倪中福, 孟凡荣, 吴利民, 谢晓东, 孙其信. 小麦杂交种及其亲本拔节期根系基因差异表达与杂种优势关系的初步研究. 中国农业科学, 2003, 36(5): 473-479.

Wang Z K, Ni Z F, Meng F R, Wu L M, Xie X D, Sun Q X. Primary study on the relationship between differential gene expression patterns in roots at jointing stage and heterosis in agronomic traits in a wheat dialle cross. Scientia Agricultura Sinica, 2003, 36(5): 473-479. (in Chinese)

[12]Sun Q X, Wu L M, Ni Z F, Meng F R, Wang Z K, Lin Z. Deferential gene expression patterns in leaves between hybrids and their parental inbreeds are correlated with heterosis in a wheat diallel cross. Plant Science, 2004, 1(66): 651-657.

[13]Wang Z K, Ni Z F, Wu L M, Nie X L, Sun Q X. Heterosis in root development and differential gene expression between hybrids and their parental inbreeds in wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 2006, 113(7): 1283-1294.

[14]沈俊儒, 吴建勇, 张  剑, 刘平武, 杨光圣. 甘蓝型油菜华油杂6号及其亲本的基因差异表达研究. 中国农业科学, 2006, 39(1): 23-28.

Shen J R, Wu J Y, Zhang J, Liu P W, Yang G S. Analysis of differential gene expression pattern in brassica napus hybrid Huayouza 6 and its parents using Arabidopsis cDNA microarray. Scientia Agricultura Sinica, 2006, 39(1): 23-28. (in Chinese)

[15]Bierhler J A, Auger D L, Riddle N C. In search of the molecular basis of heterosis. The Plant Cell, 2003, 15: 2236-2239.

[16]张洪熙, 戴正元, 赵步洪, 王宝和, 季红娟, 孔祥斗, 夏广宏, 李爱宏, 潘存红, 周长海, 黄年生, 谭长乐, 朱兆斌. 骨干恢复系扬稻 6号配组优势研究. 扬州大学学报: 农业与生命科学版, 2008, 29(4): 49-53.

Zhang H X, Dai Z Y, Zhao B H, Wang B H, Ji H J, Kong X D, Xia G H, Li A H, Pan C H, Zhou C H, Huang N S, Tan C L, Zhu Z B. Combining predominance of elite restorer lines Yangdao 6. Journal of Yangzhou University: Agricultural and Life Science Edition, 2008, 29(4): 49-53. (in Chinese)

[17]Liang P, Pardee A B. Diferential display of eukaryotie messenger RNA by means of the polymerase chain reaction. Science, 1992, 257: 967-971.

[18]杨建昌, 王  朋, 刘立军, 王志琴, 朱庆森. 中籼水稻品种产量与株型演进特征研究. 作物学报, 2006, 32(7): 949-955.

Yang J C, Wang P, Liu L J, Wang Z Q, Zhu Q S. Evolution characteristics of grain yield and plant type for mid-season indica rice cultivars. Acta Agronomica Sineca, 2006, 32(7): 949-955. (in Chinese)

[19]黄  毅, 李利华, 陈  莹, 李香花, 徐才国, 王石平, 张启发. 水稻杂种两优培9与亲本苗期基因表达比较分析. 中国科学: C辑, 2006, 36(4): 302-311.

Hang Y, Li L H, Chen Y, Li X H, Xu C G, Wang S P, Zhang Q F. Comparison analysis of hybrid rice hybrid LYP9 and parents at seedling stag. Science in China: Series C, 2006, 36(4): 302-311. (in Chinese)

[20]Griffing B. Concept of general and specific combining ability in relation to diallels crossing systems. Australian Journal of Biological Sciences, 1956, 9: 463-493.

[21]Xu Z C, Zhu J. An approach for predicting heterosis based on an additive, dominance and additive×dominance model with environment interaction. Heredity, 1999, 82: 510-517.

[22]Eberhart S A. Theoretical relations among single, three way and double cross hybrids. Biometrics, 1964, 20: 522-539.

[23]Takeda T, Suwa Y, Suzuki M, Kitano H; Miyako U T, Ashikari M, Matsuoka M, Ueguchi C. The OsTB1 gene negatively regulates lateral branching in rice. The Plant Journal, 2003, 33(3): 513-520.

[24]Fan C C, Xing Y Z, Mao H L, Lu T T, Han B, Xu C G, Li X H, Zhang Q F. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics, 2006, 112(6): 1164-1171.

[25]Song X J, Huang W, Shi M, Zhu M Z, Lin H X. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature Genetics, 2007, 39(5): 623-630.

[26]Ashikari M, Sakakibara H, Lin S Y, Yamamoto T, Takashi T, Nishimura A, Angeles E R, Qian Q, Kitano H, Matsuoka M. Cytokinin oxidase regulates rice grain production. Science, 2005, 309(741): 741-745.

[27]Chandler V L, Vaucheret H. Gene activation and gene silencing. Plant Physiology, 2001, 125: 145-148.

[28]Doebley J, Lukens L. Transcriptional regulators and the evolution of plant form. The Plant Cell, 1998: 1075-1082.

[29]Yao Y Y, Ni Z F, Zhang Y H, Chen Y, Ding Y H, Han Z F, Liu Z Y, Sun Q X. Identification of diferentially expressed genes in leaf and root between wheat hybrid and its parental inbreeds using PCR-based cDNA subtraction. Plant Molecular Biology, 2005, 58: 367-384.

[30]Wagner D. Chromat in regulation of plant development. Current Opinion in Plant Biology, 2003, 6(1): 20-28.

[31]Finnegan E J, Genger R K, Peacock W J, Dennis E S. DNA methylation in plants. Annual Review of Plant Physiology and Plant Molecular Biology, 1998, 49: 223-247.

[32]Shaked H, Kashkush K, Ozkan H, Feldman M, Levy A A. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. The Plant Cell, 2001, 13: 1749-1759.
[1] XIAO DeShun, XU ChunMei, WANG DanYing, ZHANG XiuFu, CHEN Song, CHU Guang, LIU YuanHui. Effects of Rhizosphere Oxygen Environment on Phosphorus Uptake of Rice Seedlings and Its Physiological Mechanisms in Hydroponic Condition [J]. Scientia Agricultura Sinica, 2023, 56(2): 236-248.
[2] ZHANG XiaoLi, TAO Wei, GAO GuoQing, CHEN Lei, GUO Hui, ZHANG Hua, TANG MaoYan, LIANG TianFeng. Effects of Direct Seeding Cultivation Method on Growth Stage, Lodging Resistance and Yield Benefit of Double-Cropping Early Rice [J]. Scientia Agricultura Sinica, 2023, 56(2): 249-263.
[3] ZHANG Wei,YAN LingLing,FU ZhiQiang,XU Ying,GUO HuiJuan,ZHOU MengYao,LONG Pan. Effects of Sowing Date on Yield of Double Cropping Rice and Utilization Efficiency of Light and Heat Energy in Hunan Province [J]. Scientia Agricultura Sinica, 2023, 56(1): 31-45.
[4] FENG XiangQian,YIN Min,WANG MengJia,MA HengYu,CHU Guang,LIU YuanHui,XU ChunMei,ZHANG XiuFu,ZHANG YunBo,WANG DanYing,CHEN Song. Effects of Meteorological Factors on Quality of Late Japonica Rice During Late Season Grain Filling Stage Under ‘Early Indica and Late Japonica’ Cultivation Pattern in Southern China [J]. Scientia Agricultura Sinica, 2023, 56(1): 46-63.
[5] SANG ShiFei,CAO MengYu,WANG YaNan,WANG JunYi,SUN XiaoHan,ZHANG WenLing,JI ShengDong. Research Progress of Nitrogen Efficiency Related Genes in Rice [J]. Scientia Agricultura Sinica, 2022, 55(8): 1479-1491.
[6] GUI RunFei,WANG ZaiMan,PAN ShengGang,ZHANG MingHua,TANG XiangRu,MO ZhaoWen. Effects of Nitrogen-Reducing Side Deep Application of Liquid Fertilizer at Tillering Stage on Yield and Nitrogen Utilization of Fragrant Rice [J]. Scientia Agricultura Sinica, 2022, 55(8): 1529-1545.
[7] LIAO Ping,MENG Yi,WENG WenAn,HUANG Shan,ZENG YongJun,ZHANG HongCheng. Effects of Hybrid Rice on Grain Yield and Nitrogen Use Efficiency: A Meta-Analysis [J]. Scientia Agricultura Sinica, 2022, 55(8): 1546-1556.
[8] HAN XiaoTong,YANG BaoJun,LI SuXuan,LIAO FuBing,LIU ShuHua,TANG Jian,YAO Qing. Intelligent Forecasting Method of Rice Sheath Blight Based on Images [J]. Scientia Agricultura Sinica, 2022, 55(8): 1557-1567.
[9] GAO JiaRui,FANG ShengZhi,ZHANG YuLing,AN Jing,YU Na,ZOU HongTao. Characteristics of Organic Nitrogen Mineralization in Paddy Soil with Different Reclamation Years in Black Soil of Northeast China [J]. Scientia Agricultura Sinica, 2022, 55(8): 1579-1588.
[10] ZHU DaWei,ZHANG LinPing,CHEN MingXue,FANG ChangYun,YU YongHong,ZHENG XiaoLong,SHAO YaFang. Characteristics of High-Quality Rice Varieties and Taste Sensory Evaluation Values in China [J]. Scientia Agricultura Sinica, 2022, 55(7): 1271-1283.
[11] ZHAO Ling, ZHANG Yong, WEI XiaoDong, LIANG WenHua, ZHAO ChunFang, ZHOU LiHui, YAO Shu, WANG CaiLin, ZHANG YaDong. Mapping of QTLs for Chlorophyll Content in Flag Leaves of Rice on High-Density Bin Map [J]. Scientia Agricultura Sinica, 2022, 55(5): 825-836.
[12] JIANG JingJing,ZHOU TianYang,WEI ChenHua,WU JiaNing,ZHANG Hao,LIU LiJun,WANG ZhiQin,GU JunFei,YANG JianChang. Effects of Crop Management Practices on Grain Quality of Superior and Inferior Spikelets of Super Rice [J]. Scientia Agricultura Sinica, 2022, 55(5): 874-889.
[13] ZHANG YaLing, GAO Qing, ZHAO Yuhan, LIU Rui, FU Zhongju, LI Xue, SUN Yujia, JIN XueHui. Evaluation of Rice Blast Resistance and Genetic Structure Analysis of Rice Germplasm in Heilongjiang Province [J]. Scientia Agricultura Sinica, 2022, 55(4): 625-640.
[14] WANG YaLiang,ZHU DeFeng,CHEN RuoXia,FANG WenYing,WANG JingQing,XIANG Jing,CHEN HuiZhe,ZHANG YuPing,CHEN JiangHua. Beneficial Effects of Precision Drill Sowing with Low Seeding Rates in Machine Transplanting for Hybrid Rice to Improve Population Uniformity and Yield [J]. Scientia Agricultura Sinica, 2022, 55(4): 666-679.
[15] CHEN TingTing, FU WeiMeng, YU Jing, FENG BaoHua, LI GuangYan, FU GuanFu, TAO LongXing. The Photosynthesis Characteristics of Colored Rice Leaves and Its Relation with Antioxidant Capacity and Anthocyanin Content [J]. Scientia Agricultura Sinica, 2022, 55(3): 467-478.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!