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    2024 Vol. 23 No. 6 Previous Issue    Next Issue

    Review
    Crop Science
    Horticulture
    Plant Protection
    Animal Science · Veterinary Medicine
    Agro-ecosystem & Environment
    Agricultural Economics and Management
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    Review
    Integrating artificial intelligence and high-throughput phenotyping for crop improvement
    Mansoor Sheikh, Farooq Iqra, Hamadani Ambreen, Kumar A Pravin, Manzoor Ikra, Yong Suk Chung
    2024, 23(6): 1787-1802.  DOI: 10.1016/j.jia.2023.10.019
    Abstract ( )   PDF in ScienceDirect  
    Crop improvement is crucial for addressing the global challenges of food security and sustainable agriculture.  Recent advancements in high-throughput phenotyping (HTP) technologies and artificial intelligence (AI) have revolutionized the field, enabling rapid and accurate assessment of crop traits on a large scale.  The integration of AI and machine learning algorithms with HTP data has unlocked new opportunities for crop improvement.  AI algorithms can analyze and interpret large datasets, and extract meaningful patterns and correlations between phenotypic traits and genetic factors.  These technologies have the potential to revolutionize plant breeding programs by providing breeders with efficient and accurate tools for trait selection, thereby reducing the time and cost required for variety development.  However, further research and collaboration are needed to overcome the existing challenges and fully unlock the power of HTP and AI in crop improvement.  By leveraging AI algorithms, researchers can efficiently analyze phenotypic data, uncover complex patterns, and establish predictive models that enable precise trait selection and crop breeding.  The aim of this review is to explore the transformative potential of integrating HTP and AI in crop improvement.  This review will encompass an in-depth analysis of recent advances and applications, highlighting the numerous benefits and challenges associated with HTP and AI.

    What factors control plant height?

    Li Miao, Xiangyu Wang, Chao Yu, Chengyang Ye, Yanyan Yan, Huasen Wang
    2024, 23(6): 1803-1824.  DOI: 10.1016/j.jia.2024.03.058
    Abstract ( )   PDF in ScienceDirect  

    Plant height (PH) is one of the most important components of the plant ideotype, and it affects plant biomass, yield, lodging resistance, and the ability to use mechanized harvesting.  Since many complex pathways controlling plant growth and development remain poorly understood, we are still unable to obtain the most ideal plants solely through breeding efforts.  PH can be influenced by genotype, plant hormonal regulation, environmental conditions, and interactions with other plants.  Here, we comprehensively review the factors influencing PH, including the regulation of PH-related developmental processes, the genetics and QTLs contributing to PH, and the hormone-regulated molecular mechanisms for PH.  Additionally, the symbiotic influence of grafting on PH is discussed, focusing on the molecular regulation of gene expression and genetics.  Finally, we propose strategies for applying recent findings to breeding for better PH, highlight some knowledge gaps, and suggest potential directions for future studies.

    Biology of Hippo signaling pathway: Skeletal muscle development and beyond

    Shuqi Qin, Chaocheng Li, Haiyan Lu, Yulong Feng, Tao Guo, Yusong Han, Yongsheng Zhang, Zhonglin Tang
    2024, 23(6): 1825-1838.  DOI: 10.1016/j.jia.2023.09.031
    Abstract ( )   PDF in ScienceDirect  

    Global demand for farm animals and their meat products i.e., pork, chicken and other livestock meat, is steadily incresing. With the ongoing life science research and the rapid development of biotechnology, it is a great opportunity to develop advanced molecular breeding markers to efficiently improve animal meat production traits.  Hippo is an important study subject because of its crucial role in the regulation of organ size.  In recent years, with the increase of research on Hippo signaling pathway, the integrative application of multi-omics technologies such as genomics, transcriptomics, proteomics, and metabolomics can help promote the in-depth involvement of Hippo signaling pathway in skeletal muscle development research.  The Hippo signaling pathway plays a key role in many biological events, including cell division, cell migration, cell proliferation, cell differentiation, cell apoptosis, as well as cell adhesion, cell polarity, homeostasis, maintenance of the face of mechanical overload, etc.  Its influence on the development of skeletal muscle has important research value for enhancing the efficiency of animal husbandry production.  In this study, we traced the origin of the Hippo pathway, comprehensively sorted out all the functional factors found in the pathway, deeply analyzed the molecular mechanism of its function, and classified it from a novel perspective based on its main functional domain and mode of action.  Our aim is to systematically explore its regulatory role throughout skeletal muscle development.  We specifically focus on the Hippo signaling pathway in embryonic stem cell development, muscle satellite cell fate determination, myogenesis, skeletal muscle meat production and organ size regulation, muscle hypertrophy and atrophy, muscle fiber formation and its transformation between different types, and cardiomyocytes.  The roles in proliferation and regeneration are methodically summarized and analyzed comprehensively.  The summary and prospect of the Hippo signaling pathway within this article will provide ideas for further improving meat production and muscle deposition and developing new molecular breeding technologies for livestock and poultry, which will be helpful for the development of animal molecular breeding.

    Crop Science

    Establishment of a transformation system in close relatives of wheat under the assistance of TaWOX5

    Yanan Chang, Junxian Liu, Chang Liu, Huiyun Liu, Huali Tang, Yuliang Qiu, Zhishan Lin, Ke Wang, Yueming Yan, Xingguo Ye
    2024, 23(6): 1839-1849.  DOI: 10.1016/j.jia.2023.06.021
    Abstract ( )   PDF in ScienceDirect  

    Species closely related to wheat are important genetic resources for agricultural production, functional genomics studies and wheat improvement.  In this study, a wheat gene related to regeneration, TaWOX5, was applied to establish the Agrobacterium-mediated transformation systems of Triticum monococcum, hexaploid triticale, and rye (Secale cereale L.) using their immature embryos.  Transgenic plants were efficiently generated.  During the transformation process, the Agrobacterium infection efficiency was assessed by histochemical staining for β-glucuronidase (GUS).  Finally, the transgenic nature of regenerated plants was verified by polymerase chain reaction (PCR)-based genotyping for the presence of the GUS and bialaphos resistance (bar) genes, histochemical staining for GUS protein, and the QuickStix strip assay for bar protein.  The transformation efficiency of Tmonococcum genotype PI428182 was 94.4%; the efficiencies of four hexaploid triticale genotypes Lin456, ZS3297, ZS1257, and ZS3224 were 52.1, 41.2, 19.4, and 16.0%, respectively; and the transformation efficiency of rye cultivar Lanzhou Heimai was 7.8%.  Fluorescence in situ hybridization (FISH) and genomic in situ hybridization (GISH) analyses indicated that the GUS transgenes were integrated into the distal or near centromere (proximal) regions of the chromosomes in transgenic Tmonococcum and hexaploid triticale plants.  In the transgenic hexaploid triticale plants, the foreign DNA fragment was randomly integrated into the AABB and RR genomes.  Furthermore, the transgene was almost stably inherited in the next generation by Mendel’s law.  The findings in this study will promote the genetic improvement of the three plant species for grain or forage production and the improvement of cereal species including wheat for functional genomics studies.

    Strigolactones modulate cotton fiber elongation and secondary cell wall thickening

    Yunze Wen, Peng He, Xiaohan Bai, Huizhi Zhang, Yunfeng Zhang, Jianing Yu
    2024, 23(6): 1850-1863.  DOI: 10.1016/j.jia.2023.07.009
    Abstract ( )   PDF in ScienceDirect  

    Cotton is one of the most important economic crops in the world, and it is a major source of fiber in the textile industry.  Strigolactones (SLs) are a class of carotenoid-derived plant hormones involved in many processes of plant growth and development, although the functions of SL in fiber development remain largely unknown.  Here, we found that the endogenous SLs were significantly higher in fibers at 20 days post-anthesis (DPA).  Exogenous SLs significantly increased fiber length and cell wall thickness.  Furthermore, we cloned three key SL biosynthetic genes, namely GhD27, GhMAX3, and GhMAX4, which were highly expressed in fibers, and subcellular localization analyses revealed that GhD27, GhMAX3, and GhMAX4 were localized in the chloroplast.  The exogenous expression of GhD27, GhMAX3, and GhMAX4 complemented the physiological phenotypes of d27, max3, and max4 mutations in Arabidopsis, respectively.  Knockdown of GhD27, GhMAX3, and GhMAX4 in cotton resulted in increased numbers of axillary buds and leaves, reduced fiber length, and significantly reduced fiber thickness.  These findings revealed that SLs participate in plant growth, fiber elongation, and secondary cell wall formation in cotton.  These results provide new and effective genetic resources for improving cotton fiber yield and plant architecture.

    Heterogeneous expression of stearoyl-acyl carrier protein desaturase genes SAD1 and SAD2 from Linum usitatissimum enhances seed oleic acid accumulation and seedling cold and drought tolerance in Brassica napus

    Jianjun Wang, Yanan Shao, Xin Yang, Chi Zhang, Yuan Guo, Zijin Liu, Mingxun Chen
    2024, 23(6): 1864-1878.  DOI: 10.1016/j.jia.2023.05.013
    Abstract ( )   PDF in ScienceDirect  

    Flax (Linum usitatissimum L.) is a versatile crop and its seeds are a major source of unsaturated fatty acids.  Stearoyl-acyl carrier protein desaturase (SAD) is a dehydrogenase enzyme that plays a key role in oleic acid biosynthesis as well as responses to biotic and abiotic stresses.  However, the function of SAD orthologs from Lusitatissimum has not been assessed.  Here, we found that two LuSAD genes, LuSAD1 and LuSAD2, are present in the genome of Lusitatissimum cultivar ‘Longya 10’.  Heterogeneous expression of either LuSAD1 or LuSAD2 in Arabidopsis thaliana resulted in higher contents of total fatty acids and oleic acid in the seeds.  Interestingly, ectopic expression of LuSAD2 in Athaliana caused altered plant architecture.  Similarly, the overexpression of either LuSAD1 or LuSAD2 in Brassica napus also resulted in increased contents of total fatty acids and oleic acid in the seeds.  Furthermore, we demonstrated that either LuSAD1 or LuSAD2 enhances seedling resistance to cold and drought stresses by improving antioxidant enzyme activity and nonenzymatic antioxidant levels, as well as reducing membrane damage.  These findings not only broaden our knowledge of the LuSAD functions in plants, but also offer promising targets for improving the quantity and quality of oil, and the abiotic stress tolerance of oil-producing crops, through molecular manipulation.

    The response of roots and the rhizosphere environment to integrative cultivation practices in paddy rice

    Hanzhu Gu, Xian Wang, Minhao Zhang, Wenjiang Jing, Hao Wu, Zhilin Xiao, Weiyang Zhang, Junfei Gu, Lijun Liu, Zhiqin Wang, Jianhua Zhang, Jianchang Yang, Hao Zhang
    2024, 23(6): 1879-1896.  DOI: 10.1016/j.jia.2023.06.031
    Abstract ( )   PDF in ScienceDirect  

    Integrative cultivation practices (ICPs) are essential for enhancing cereal yield and resource use efficiency.  However, the effects of ICP on the rhizosphere environment and roots of paddy rice are still poorly understood.  In this study, four rice varieties were produced in the field.  Each variety was treated with six different cultivation techniques, including zero nitrogen application (0 N), local farmers’ practice (LFP), nitrogen reduction (NR), and three progressive ICP techniques comprised of enhanced fertilizer N practice and increased plant density (ICP1), a treatment similar to ICP1 but with alternate wetting and moderate drying instead of continuous flooding (ICP2), and the same practices as ICP2 with the application of organic fertilizer (ICP3).  The ICPs had greater grain production and nitrogen use efficiency than the other three methods.  Root length, dry weight, root diameter, activity of root oxidation, root bleeding rate, zeatin and zeatin riboside compositions, and total organic acids in root exudates were elevated with the introduction of the successive cultivation practices.  ICPs enhanced nitrate nitrogen, the activities of urease and invertase, and the diversity of microbes (bacteria) in rhizosphere and non-rhizosphere soil, while reducing the ammonium nitrogen content.  The nutrient contents (ammonium nitrogen, total nitrogen, total potassium, total phosphorus, nitrate, and available phosphorus) and urease activity in rhizosphere soil were reduced in all treatments in comparison with the non-rhizosphere soil, but the invertase activity and bacterial diversity were greater.  The main root morphology and physiology, and the ammonium nitrogen contents in rhizosphere soil at the primary stages were closely correlated with grain yield and internal nitrogen use efficiency.  These findings suggest that the coordinated enhancement of the root system and the environment of the rhizosphere under integrative cultivation approaches may lead to higher rice production.

    Inhibition of protein degradation increases the Bt protein concentration in Bt cotton

    Yuting Liu, Hanjia Li, Yuan Chen, Tambel Leila. I. M., Zhenyu Liu, Shujuan Wu, Siqi Sun, Xiang Zhang, Dehua Chen
    2024, 23(6): 1897-1909.  DOI: 10.1016/j.jia.2023.06.033
    Abstract ( )   PDF in ScienceDirect  

    Bacillus thuringiensis (Bt) cotton production is challenged by two main problems, i.e., the low concentration of Bt protein at the boll setting stage and the lowest insect resistance in bolls among all the cotton plant’s organs.  Therefore, increasing the Bt protein concentration at the boll stage, especially in bolls, has become the main goal for increasing insect resistance in cotton.  In this study, two protein degradation inhibitors (ethylene diamine tetra acetic acid (EDTA) and leupeptin) were sprayed on the bolls, subtending leaves, and whole cotton plants at the peak flowering stage of two Bt cultivars (medium maturation Sikang 1 (SK1) and early maturation Zhongmian 425 (ZM425) in 2019 and 2020.  The Bt protein content and protein degradation metabolism were assessed.  The results showed that the Bt protein concentrations were enhanced by 21.3 to 38.8% and 25.0 to 38.6% in the treated bolls of SK1 and ZM425 respectively, while they were decreased in the subtending leaves of these treated bolls.  In the treated leaves, the Bt protein concentrations increased by 7.6 to 23.5% and 11.2 to 14.9% in SK1 and ZM425, respectively.  The combined application of EDTA and leupeptin to the whole cotton plant increased the Bt protein concentrations in both bolls and subtending leaves.  The Bt protein concentrations in bolls were higher, increasing by 22.5 to 31.0% and 19.6 to 32.5% for SK1 and ZM425, respectively.  The organs treated with EDTA or/and leupeptin showed reduced free amino acid contents, protease and peptidase activities and significant enhancements in soluble protein contents.  These results indicated that inhibiting protein degradation could improve the protein content, thus increasing the Bt protein concentrations in the bolls or/and leaves of cotton plants.  Therefore, the increase in the Bt protein concentration without yield reduction suggested that these two protein degradation inhibitors may be applicable for improving insect resistance in cotton production.

    Coordinated responses of leaf and nodule traits contribute to the accumulation of N in relay intercropped soybean

    Ping Chen, Qing Du, Benchuan Zheng, Huan Yang, Zhidan Fu, Kai Luo, Ping Lin, Yilin Li, Tian Pu, Taiwen Yong, Wenyu Yang
    2024, 23(6): 1910-1928.  DOI: 10.1016/j.jia.2023.06.035
    Abstract ( )   PDF in ScienceDirect  

    Maize (Zea mays L.)–soybean (Glycine max L. Merr.) relay intercropping provides a way to enhance land productivity.  However, the late-planted soybean suffers from shading by the maize.  After maize harvest, how the recovery growth influences the leaf and nodule traits remains unclear.  A three-year field experiment was conducted to evaluate the effects of genotypes, i.e., supernodulating (nts1007), Nandou 12 (ND12), and Guixia 3 (GX3), and crop configurations, i.e., the interspecific row spacing of 45 (I45), 60 (I60), 75 cm (I75), and sole soybean (SS), on soybean recovery growth and N fixation.  The results showed that intercropping reduced the soybean total leaf area (LA) by reducing both the leaf number (LN) and unit leaflet area (LUA), and it reduced the nodule dry weight (NW) by reducing both the nodule number (NN) and nodule diameter (ND) compared with the SS.  The correlation and principal component analysis (PCA) indicated a co-variability of the leaf and nodule traits in response to the genotype and crop configuration interactions.  During the recovery growth stages, the compensatory growth promoted soybean growth to reduce the gaps of leaf and nodule traits between intercropping and SS.  The relative growth rates of ureide (RGR_U) and nitrogen (RGR_N) accumulation were higher in intercropping than in SS.  Intercropping achieved more significant sucrose and starch contents compared with SS.  ND12 and GX3 showed more robust compensatory growth than nts1007 in intercropping.  Although the recovery growth of relay intercropping soybean improved biomass and nitrogen accumulation, ND12 gained a more significant partial land equivalent ratio (pLER) than GX3.  The I60 treatment achieved more robust compensation effects on biomass and N accumulation than the other configurations.  Meanwhile, I60 showed a higher nodule sucrose content and greater shoot ureide and N accumulation than SS.  Finally, intercropping ND12 with maize using an interspecific row spacing of 60 cm was optimal for both yield advantage and N accumulation.

    Horticulture

    Genome wide association analysis identifies candidate genes for fruit quality and yield in Actinidia eriantha 

    Yingzhen Wang, Ying Wu, Xinlei Wang, Wangmei Ren, Qinyao Chen, Sijia Zhang, Feng Zhang, Yunzhi Lin, Junyang Yue, Yongsheng Liu
    2024, 23(6): 1929-1939.  DOI: 10.1016/j.jia.2023.11.025
    Abstract ( )   PDF in ScienceDirect  

    Quality and yield are the primary concerns in kiwifruit breeding, but research on the genetic mechanisms of fruit size, shape, and ascorbic acid (ASA) content is currently very limited, which restricts the development of kiwifruit molecular breeding.  In this study, we obtained a total of 8.88 million highly reliable single nucleotide polymorphism (SNP) markers from 140 individuals from the natural hybrid offspring of Actinidia eriantha cv. ‘White’ using whole genome resequencing technology.  A genome-wide association study was conducted on eight key agronomic traits, including single fruit weight, fruit shape, ASA content, and the number of inflorescences per branch.  A total of 59 genetic loci containing potential functional genes were located, and candidate genes related to single fruit weight, fruit length, ASA content, number of inflorescences per branch and other traits were identified within the candidate interval, such as AeWUSCHEL, AeCDK1 (cell cycle dependent kinase), AeAO1 (ascorbic oxidase) and AeCO1 (CONSTANS-like 4).  After constructing an RNAi vector for AeAO1 and injecting it into the fruit of cv. ‘Midao 31’ to interfere with the expression of the AeAO1 gene, the results showed that the activity of ascorbic oxidase in the fruit of ‘Midao 31’ significantly decreased, while the content of ASA significantly increased.  This study provides valuable insights into the genetic basis of variation in Aeriantha fruit traits, which may benefit molecular marker-assisted breeding efforts.

    Duplicated chalcone synthase (CHS) genes modulate flavonoid production in tea plants in response to light stress

    Mingzhuo Li, Wenzhao Wang, Yeru Wang, Lili Guo, Yajun Liu, Xiaolan Jiang, Liping Gao, Tao Xia
    2024, 23(6): 1940-1955.  DOI: 10.1016/j.jia.2024.03.060
    Abstract ( )   PDF in ScienceDirect  
    In tea plants, the abundant flavonoid compounds are responsible for the health benefits for the human body and define the astringent flavor profile.  While the downstream mechanisms of flavonoid biosynthesis have been extensively studied, the role of chalcone synthase (CHS) in this secondary metabolic process in tea plants remains less clear.  In this study, we compared the evolutionary profile of the flavonoid metabolism pathway and discovered that gene duplication of CHS occurred in tea plants.  We identified three CsCHS genes, along with a CsCHS-like gene, as potential candidates for further functional investigation.  Unlike the CsCHS-like gene, the CsCHS genes effectively restored flavonoid production in Arabidopsis chs-mutants.  Additionally, CsCHS transgenic tobacco plants exhibited higher flavonoid compound accumulation compared to their wild-type counterparts.  Most notably, our examination of promoter and gene expression levels for the selected CHS genes revealed distinct responses to UV-B stress in tea plants.  Our findings suggest that environmental factors such as UV-B exposure could have been the key drivers behind the gene duplication events in CHS.
    Plant Protection

    The DNA damage repair complex MoMMS21–MoSMC5 is required for infection-related development and pathogenicity of Magnaporthe oryzae

    Yue Jiang, Rong Wang, Lili Du, Xueyu Wang, Xi Zhang, Pengfei Qi, Qianfei Wu, Baoyi Peng, Zonghua Wang, Mo Wang, Ya Li
    2024, 23(6): 1956-1966.  DOI: 10.1016/j.jia.2024.01.010
    Abstract ( )   PDF in ScienceDirect  
    The conserved DNA damage repair complex, MMS21–SMC5/6 (Methyl methane sulfonate 21–Structural maintenance of chromosomes 5/6), has been extensively studied in yeast, animals, and plants.  However, its role in phytopathogenic fungi, particularly in the highly destructive rice blast fungus Magnaporthe oryzae, remains unknown.  In this study, we functionally characterized the homologues of this complex, MoMMS21 and MoSMC5, in M. oryzae.  We first demonstrated the importance of DNA damage repair in M. oryzae by showing that the DNA damage inducer phleomycin inhibited vegetative growth, infection-related development and pathogenicity in this fungus.  Additionally, we discovered that MoMMS21 and MoSMC5 interacted in the nuclei, suggesting that they also function as a complex in M. oryzae.  Gene deletion experiments revealed that both MoMMS21 and MoSMC5 are required for infection-related development and pathogenicity in M. oryzae, while only MoMMS21 deletion affected growth and sensitivity to phleomycin, indicating its specific involvement in DNA damage repair.  Overall, our results provide insights into the roles of MoMMS21 and MoSMC5 in M. oryzae, highlighting their functions beyond DNA damage repair.


    A bacterial protein Rhp-PSP inhibits plant viral proliferation through endoribonuclease activity

    Lijie Chen, Qianze Peng, Xiaohua Du, Weixing Zhang, Ju’e Cheng, Shu’e Sun, Deyong Zhang, Pin Su, Yong Liu
    2024, 23(6): 1967-1978.  DOI: 10.1016/j.jia.2024.03.051
    Abstract ( )   PDF in ScienceDirect  

    Plant virus causes massive crop losses globally.  However, there is currently no effective measure to control plant viral disease.  Previously, we identify an antiviral protein Rhp-PSP, produced by the bacterial Rhodopseudomonas palustris strain JSC-3b.  In this study, we discover that the antiviral activity of Rhp-PSP relies on its endoribonuclease activity.  Converting the arginine (R) residue at position 129 onto alanine (A) abolishs its endoribonuclease activity on coat protein (CP) RNA of tobacco mosaic virus (TMV), consequentially, compromises the antiviral activity of Rhp-PSP.  Further investigation demonstrates that, the mutant Rhp-PSPR129A is unable to form the homotrimer as the wild type, indicating the importance of quaternary junction for the endoribonuclease activity.  Overexpression of Rhp-PSP in Nicotiana benthamiana significantly enhances the resistance against TMV of seedlings, while expression of Rhp-PSPR129A did not, confirming that endoribonuclease activity is responsible for the antiviral activity of Rhp-PSP.  In addition, foliar spray of Rhp-PSP solution on tomato and pepper plants significantly reduces the disease index of viral diseases, indicating that Rhp-PSP shows potential to develop antiviral agent in practice.

    Eureka lemon zinc finger protein ClDOF3.4 interacts with citrus yellow vein clearing virus coat protein to inhibit viral infection

    Ping Liao, Ting Zeng, Mengyang Huangfu, Cairong Zheng, Jiequn Ren, Changyong Zhou, Yan Zhou
    2024, 23(6): 1979-1993.  DOI: 10.1016/j.jia.2024.03.049
    Abstract ( )   PDF in ScienceDirect  
    Citrus yellow vein clearing virus (CYVCV) is a new citrus virus that has become an important factor restricting the development of China’s citrus industry, and the CYVCV coat protein (CP) is associated with viral pathogenicity.  In this study, the Eureka lemon zinc finger protein (ZFP) ClDOF3.4 was shown to interact with CYVCV CP in vivo and in vitro.  Transient expression of ClDOF3.4 in Eureka lemon induced the expression of salicylic acid (SA)-related and hypersensitive response marker genes, and triggered a reactive oxygen species burst, ion leakage necrosis, and the accumulation of free SA.  Furthermore, the CYVCV titer in ClDOF3.4 transgenic Eureka lemon plants was approximately 69.4% that in control plants 6 mon after inoculation, with only mild leaf chlorotic spots observed in those transgenic plants.  Taken together, the results indicate that ClDOF3.4 not only interacts with CP but also induces an immune response in Eureka lemon by inducing the SA pathways.  This is the first report that ZFP is involved in the immune response of a citrus viral disease, which provides a basis for further study of the molecular mechanism of CYVCV infection.

    Identification of transient receptor potential channel genes and functional characterization of TRPA1 in Spodoptera frugiperda 

    Yutong Zhang, Hangwei Liu, Song Cao, Bin Li, Yang Liu, Guirong Wang
    2024, 23(6): 1994-2005.  DOI: 10.1016/j.jia.2023.09.023
    Abstract ( )   PDF in ScienceDirect  

    Spodoptera frugiperda is a highly destructive pest that has become a global problem due to its robust reproductive and migratory capabilities.  Transient receptor potential (TRP) channels, which constitute a vast ion channel family, play pivotal roles in sensing the external environment and maintaining internal homeostasis in insects.  TRP channels have been widely investigated for their critical roles in regulating various insect behaviors in recent years.  In this study, we identified 15 TRP gene loci encoding 26 transcripts in the genome of Sfrugiperda and analyzed their expression profiles at different developmental stages.  The results revealed that Sfrugiperda possesses four TRPC genes, six TRPA genes, one TRPM gene, two TRPV genes, one TRPN gene, and one TRPML gene, while a canonical TRPP is absent.  Moreover, the SfruTRPA1 was functionally characterized using the Xenopus oocyte expression system.  The results showed that SfruTRPA1 is activated by temperature increases from 20 to 45°C, and there is no significant desensitization after repeated stimuli within the same temperature range.  Additionally, SfruTRPA1 is activated by certain natural chemicals, including allyl isothiocyanate (AITC) and cinnamaldehyde (CA).  These findings provide valuable insights to the TRP genes in Sfrugiperda.

    CRISPR/Cas9-mediated NlInR2 mutants: Analyses of residual mRNA and truncated proteins

    Jun Lü, Jingxiang Chen, Yutao Hu , Lin Chen, Shihui Li, Yibing Zhang, Wenqing Zhang
    2024, 23(6): 2006-2017.  DOI: 10.1016/j.jia.2023.06.039
    Abstract ( )   PDF in ScienceDirect  
    CRISPR/Cas9 technology is a powerful genome manipulation tool in insects.  However, little is known about whether mRNA and protein of a target gene are completely cleared in homozygous mutants.  This study generated homozygous mutants of the insulin receptor gene 2 (NlInR2) in the brown planthopper (Nilaparvata lugens) using CRISPR/Cas9 genome editing.  Both frameshift mutants, E5_D17 and E6_I7, differentiated towards long wings, but there were differences in wing morphology, with E5_D17 showing wing deformities.  Subsequent investigations revealed the presence of residual expression of NlInR2 mRNA in both mutants, as well as the occurrence of spliceosomes featuring exon skipping splicing in E5_D17.  Additionally, the E5_D17 exhibited the detection of N-terminally truncated NlInR2 protein.  RNA interference experiments indicated that the knockdown of NlInR2 expression in the E5_D17 mutant line increased the proportion of wing deformities from 11.1 to 65.6%, suggesting that the residual NlInR2 mRNA of the E5_D17 mutant might have retained some genetic functions.  Our results imply that systematic characterization of residual protein expression or function in CRISPR/Cas9-generated mutant lines is necessary for phenotypic interpretation.
    The life-history trait trade-offs mediated by reproduction and immunity in the brown planthopper, Nilaparvata lugens Stål
    Dan Sun, Hongfeng Wang, Jiahui Zeng, Qiuchen Xu, Mingyun Wang, Xiaoping Yu, Xuping Shentu
    2024, 23(6): 2018-2032.  DOI: 10.1016/j.jia.2024.03.062
    Abstract ( )   PDF in ScienceDirect  

    Reproduction and immune defense are costly functions, and they are expected to tradeoff with each other to drive evolution.  The brown planthopper (BPH), Nilaparvata lugens Stål (Hemiptera, Delphacidae), is a global superpest that mostly damages rice crops.  Yeast-like symbionts (YLS) exist in the abdominal fat body tissue and are tightly associated with the development, growth, and reproduction of BPH.  Our previous research demonstrated that mating behavior promotes the release of YLS from the fat body into the hemolymph in the BPH, thereby triggering an immune response.  Additionally, the fitness costs related to life-history traits of BPH (such as survival rate) have a strong dependence on the relative abundance of YLS.  However, the possible relationship between reproduction and the immune response in BPH has not been identified.  In this study, an omics-based approach was used to analyze the transcriptome of fat body tissues in mated and unmated BPH at 72 h post-eclosion, from which two antimicrobial peptide genes, NlDefensin A (NlDfA) and NlDefensin B (NlDfB), were selected since they were highly expressed in mated BPH.  Subsequently, the full-length cDNA sequences of the NlDfA and NlDfB genes were cloned and analyzed.  qPCR results showed up-regulation of the NlDfA and NlDfB genes in mated BPH when compared to unmated BPH.  Spatial-temporal expression analysis indicated that the NlDfA and NlDfB genes were expressed in all tissues and developmental stages, and they were most highly expressed in the fat body at 24 h post-eclosion.  Moreover, the symbionts in BPH were significantly inhibited by the in vitro expression of the NlDfA and NlDfB proteins.  Furthermore, RNA interference (RNAi)-mediated suppression of NlDfA and NlDfB dramatically increased the relative abundance of YLS in the fat body, while YLS in the hemolymph decreased significantly.  These BPHs also displayed some fitness disadvantages in survival, fecundity, hatchability, and possibly the vertical transmission of YLS from hemolymph to egg.  Our results indicated that mating could heighten the immunity of BPH by up-regulating the expression of the NlDfA and NlDfB genes, which protect the host from pathogen challenges during reproduction.  However, the reduced content of YLS may act as a fitness disadvantage in dictating the life-history traits of BPH.  This work has significant theoretical and practical implications for the precise green control technology that involves crucial gene targeting, as well as for the “endosymbionts for pest control” strategy in insects.

    Animal Science · Veterinary Medicine

    Gut microbiome and serum metabolome analyses identify Bacteroides fragilis as regulators of serotonin content and PRL secretion in broody geese

    Yu Zhang, Ning Zhou, Jia Wu, Lina Song, Qiang Bao, Kaiqi Weng, Yang Zhang, Wanwipa Vongsangnak, Guohong Chen, Qi Xu
    2024, 23(6): 2033-2051.  DOI: 10.1016/j.jia.2023.12.031
    Abstract ( )   PDF in ScienceDirect  

    Broody behavior is regulated by hypothalamic prolactin secretion, which seriously affects egg production in poulty production.  Numerous studies have provided evidence that animal behavior is governed by dynamic bidirectional communication between specific gut bacteria and their host via the brain–gut–microbiome axis.  However, little research focused on how the gut microbiota influence broody behavior in poultry.  In this study, Zhedong white geese in laying and brooding phases were selected.  Ten differentially abundant bacteria in cecum were detected between brooding and laying geese through metagenomic analyses and 16S rRNA sequencing (P<0.05), and Bacteroides fragilis was specifically identified as a key driver species in the brooding geese.  Moverover, the serum metabolites were quantified, and the 313 differentially abundant metabolites were found between the two groups of different physiological geese.  They were primarily enriched in the tryptophan metabolism pathways.  Pearson correlation analyses revealed there was a significant positive correlation between Bfragilis abundance and the context of 11 tryptophan metabolism-related metabolites (such as serotonin, etc.) in broody geese, which hinted that those tryptophan metabolites might be produced or driven by Bfragilis.  Finally, the serum hormone levels were also measured.  We found there was a positive correlation between Bfragilis abundance and content of serotonin.  Besides, prolactin secreted by the pituitary gland was greater in brooding geese than that in laying geese, which was also highly correlated with Bfragilis abundance.  This result implied that Bfragilis could promote the secretion of prolactin by the pituitary gland.  Together, the current study findings provided the information on gut microbiota influencing broody behavior, Bfragilis produced or driven more serum serotonin, and stimulated the pituitary gland to secret more prolactin, which potentially offered a new enlightenment for the intervention of broody behavior in poultry.

    Antibodies elicited by Newcastle disease virus-vectored H7N9 avian influenza vaccine are functional in activating the complement system

    Zenglei Hu, Ya Huang, Jiao Hu, Xiaoquan Wang, Shunlin Hu, Xiufan Liu
    2024, 23(6): 2052-2064.  DOI: 10.1016/j.jia.2023.11.007
    Abstract ( )   PDF in ScienceDirect  

    H7N9 subtype avian influenza virus poses a great challenge for poultry industry.  Newcastle disease virus (NDV)-vectored H7N9 avian influenza vaccines (NDVvecH7N9) are effective in disease control because they are protective and allow mass administration.  Of note, these vaccines elicit undetectable H7N9-specific hemagglutination-inhibition (HI) but high IgG antibodies in chickens.  However, the molecular basis and protective mechanism underlying this particular antibody immunity remain unclear.  Herein, immunization with an NDVvecH7N9 induced low anti-H7N9 HI and virus neutralization titers but high levels of hemagglutinin (HA)-binding IgG antibodies in chickens.  Three residues (S150, G151 and S152) in HA of H7N9 virus were identified as the dominant epitopes recognized by the NDVvecH7N9 immune serum.  Passively transferred NDVvecH7N9 immune serum conferred complete protection against H7N9 virus infection in chickens.  The NDVvecH7N9 immune serum can mediate a potent lysis of HA-expressing and H7N9 virus-infected cells and significantly suppress H7N9 virus infectivity.  These activities of the serum were significantly impaired after heat-inactivation or treatment with complement inhibitor, suggesting the engagement of the complement system.  Moreover, mutations in the 150-SGS-152 sites in HA resulted in significant reductions in cell lysis and virus neutralization mediated by the NDVvecH7N9 immune serum, indicating the requirement of antibody-antigen binding for complement activity.  Therefore, antibodies induced by the NDVvecH7N9 can activate antibody-dependent complement-mediated lysis of H7N9 virus-infected cells and complement-mediated neutralization of H7N9 virus.  Our findings unveiled a novel role of the complement in protection conferred by the NDVvecH7N9, highlighting a potential benefit of engaging the complement system in H7N9 vaccine design.

    Agro-ecosystem & Environment

    Application of organic manure as a potential strategy to alleviate the limitation of microbial resources in soybean rhizospheric and bulk soils

    Zhimin Wu, Xiaozeng Han, Xu Chen, Xinchun Lu, Jun Yan, Wei Wang, Wenxiu Zou, Lei Yan
    2024, 23(6): 2065-2082.  DOI: 10.1016/j.jia.2023.10.021
    Abstract ( )   PDF in ScienceDirect  

    The development and vigor of soil microorganisms in terrestrial ecosystems are frequently constrained by the limited availability of essential elements such as carbon (C), nitrogen (N), and phosphorus (P).  In this study, we investigated the impact of long-term application of varying levels of organic manure, low (7.5 Mg ha−1 yr−1), moderate (15.0 Mg ha−1 yr−1), and high (22.5 Mg ha−1 yr−1), on the stoichiometry of enzymes and the structures of the microbial communities in soybean rhizospheric and bulk soils.  The main goal of this research was to examine how soil microbial resource limitations in the rhizosphere respond to different long-term fertilization strategies.  The soil enzymatic activities were quantified, and the structure of the microbial community was assessed by analyzing phospholipid fatty acid profiles.  When compared to the bulk soil, the rhizospheric soil had significant increases in microbial biomass carbon (MBC), nitrogen (MBN), and phosphorus (MBP), with MBC increasing by 54.19 to 72.86%, MBN by 47.30 to 48.17%, and MBP by 17.37 to 208.47%.  Compared with the unfertilized control (CK), the total microbial biomasses of the rhizospheric (increased by 22.80 to 90.82%) and bulk soils (increased by 10.57 to 60.54%) both exhibited increases with the application of organic manure, and the rhizospheric biomass was higher than that of bulk soil.  Compared with bulk soil, the activities of C-, N- and P-acquiring enzymes of rhizospheric soil increased by 22.49, 14.88, and 29.45% under high levels of organic manure, respectively.  Analyses of vector length, vector angle, and scatter plots revealed that both rhizospheric and bulk soils exhibited limitations in terms of both carbon (C) and phosphorus (P) availability.  The results of partial least-squares path modelling indicated that the rhizospheric soil exhibited a more pronounced response to the rate of manure application than the bulk soil.  The varying reactions of rhizospheric and bulk soils to the extended application of organic manure underscore the crucial function of the rhizosphere in mitigating limitations related to microbial resources, particularly in the context of different organic manure application rates.

    Effects of long-term partial substitution of inorganic fertilizer with pig manure and/or straw on nitrogen fractions and microbiological properties in greenhouse vegetable soils

    Shuo Yuan, Ruonan Li, Yinjie Zhang, Hao'an Luan, Jiwei Tang, Liying Wang, Hongjie Ji, Shaowen Huang
    2024, 23(6): 2083-2098.  DOI: 10.1016/j.jia.2024.02.017
    Abstract ( )   PDF in ScienceDirect  

    Partial substitution of inorganic fertilizers with organic amendments is an important agricultural management practice.  An 11-year field experiment (22 cropping periods) was carried out to analyze the impacts of different partial substitution treatments on crop yields and the transformation of nitrogen fractions in greenhouse vegetable soil.  Four treatments with equal N, P2O5, and K2O inputs were selected, including complete inorganic fertilizer N (CN), 50% inorganic fertilizer N plus 50% pig manure N (CPN), 50% inorganic fertilizer N plus 25% pig manure N and 25% corn straw N (CPSN), and 50% inorganic fertilizer N plus 50% corn straw N (CSN).  Organic substitution treatments tended to increase crop yields since the 6th cropping period compared to the CN treatment.  From the 8th to the 22nd cropping periods, the highest yields were observed in the CPSN treatment where yields were 7.5–11.1% greater than in CN treatment.  After 11-year fertilization, compared to CN, organic substitution treatments significantly increased the concentrations of NO3-N, NH4+-N, acid hydrolysis ammonium-N (AHAN), amino acid-N (AAN), amino sugar-N (ASN), and acid hydrolysis unknown-N (AHUN) in soil by 45.0–69.4, 32.8–58.1, 49.3–66.6, 62.0–69.5, 34.5–100.3, and 109.2–172.9%, respectively.  Redundancy analysis indicated that soil C/N and OC concentration significantly affected the distribution of N fractions.  The highest concentrations of NO3-N, AHAN, AAN, AHUN were found in the CPSN treatment.  Organic substitution treatments increased the activities of β-glucosidase, β-cellobiosidase, N-acetyl-glucosamidase, L-aminopeptidase, and phosphatase in the soil.  Organic substitution treatments reduced vector length and increased vector angle, indicating alleviation of constraints of C and N on soil microorganisms.  Organic substitution treatments increased the total concentrations of phospholipid fatty acids (PLFAs) in the soil by 109.9–205.3%, and increased the relative abundance of G+ bacteria and fungi taxa, but decreased the relative abundance of G bacteria, total bacteria, and actinomycetes.  Overall, long-term organic substitution management increased soil OC concentration, C/N, and the microbial population, the latter in turn positively influenced soil enzyme activity.  Enhanced microorganism numbers and enzyme activity enhanced soil N sequestration by transforming inorganic N to acid hydrolysis-N (AHN), and enhanced soil N supply capacity by activating non-acid hydrolysis-N (NAHN) to AHN, thus improving vegetable yield.  Application of inorganic fertilizer, manure, and straw was a more effective fertilization model for achieving sustainable greenhouse vegetable production than application of inorganic fertilizer alone.

    Characteristics of the microbial communities regulate soil multi-functionality under different cover crop amendments in Ultisol

    Guilong Li, Xiaofen Chen, Wenjing Qin, Jingrui Chen, Ke Leng, Luyuan Sun, Ming Liu, Meng Wu, Jianbo Fan, Changxu Xu, Jia Liu
    2024, 23(6): 2099-2111.  DOI: 10.1016/j.jia.2023.11.050
    Abstract ( )   PDF in ScienceDirect  

    The use of cover crops is a promising strategy for influencing the soil microbial consortium, which is essential for the delivery of multiple soil functions (i.e., soil multifunctionality).  Nonetheless, relatively little is known about the role of the soil microbial consortium in mediating soil multifunctionality under different cover crop amendments in dryland Ultisols.  Here, we assessed the multifunctionality of soils subjected to four cover crop amendments (control, non-amended treatment; RD, radish monoculture; HV, hairy vetch monoculture; and RDHV, radish–hairy vetch mixture), and we investigated the contributions of soil microbial richness, network complexity, and ecological clusters to soil multifunctionality.  Our results demonstrated that cover crops whose chemical composition differed from that of the main plant crop promoted higher multifunctionality, and the radish–hairy vetch mixture rendered the highest enhancement.  We obtained evidence that changes in soil microbial richness and network complexity triggered by the cover crops were associated with higher soil multifunctionality.  Specifically, specialized microbes in a key ecological cluster (ecological cluster 2) of the soil microbial network were particularly important for maintaining soil multifunctionality.  Our results highlight the importance of cover crop-induced variations in functionally important taxa for promoting the soil multifunctionality of dryland Ultisols.

    Agricultural Economics and Management

    Are gender inclusiveness and rural transformation interlinked?  The case of Bangladesh

    Maria Fay Rola-Rubzen, Mohammad Jahangir Alam, Jon Marx Sarmiento, Ismat Ara Begum, Al Amin Al Abbasi, Subrata Saha
    2024, 23(6): 2112-2126.  DOI: 10.1016/j.jia.2024.04.009
    Abstract ( )   PDF in ScienceDirect  

    Gender inclusiveness is important in the rural transformation process of Bangladesh as rural women play key roles in both agricultural and non-agricultural sectors.  Gender inclusiveness also leads to gender equity.  We empirically evaluate relationships between rural transformation and gender inclusiveness in Bangladesh.  We consider three rural transformation indicators: high-value commodities’ share in agricultural output values, non-farm employment’s share in rural labor employment, and non-agricultural GDP’s share in total GDP.  Indicators capturing gender inclusiveness include the per capita rural income of males and females, ratio of investments into gender programs, female access to education, access to healthcare, employment participation, land ownership, and asset ownership.  We test the effect of the difference in per capita rural income of males and females and the ratio of their incomes and check for the robustness of the gender variables across different model specifications.  Analyzing 128 district-level observations from 32 districts of Bangladesh across four time periods (2000, 2005, 2010 and 2016), we use both ordinary least squares and fixed effects panel regression models.  We find that female land and asset ownership and access to education and healthcare are robust determinants of various stages of rural transformation.  Thus, our results suggest that improving women’s ownership of land and assets and investing in women’s education and healthcare will likely contribute to a more inclusive rural transformation.

    How to enhance agricultural plastic waste management in China? Insights from public participation

    Aibo Hao, Thomas Dogot, Changbin Yin
    2024, 23(6): 2127-2143.  DOI: 10.1016/j.jia.2023.10.033
    Abstract ( )   PDF in ScienceDirect  

    Agricultural plastics play a pivotal role in agricultural production.  However, due to expensive costs, agricultural plastic waste management (APWM) encounters a vast funding gap.  As one of the crucial stakeholders, the public deserves to make appropriate efforts for APWM.  Accordingly, identifying whether the public is willing to pay for APWM and clarifying the decisions’ driving pathways to explore initiatives for promoting their payment intentions are essential to address the dilemma confronting APWM.  To this end, by applying the extended theory of planned behavior (TPB), the study conducted an empirical analysis based on 1,288 residents from four provinces (autonomous regions) of northern China.  Results illustrate that: 1) respondents hold generally positive and relatively strong payment willingness towards APWM; 2) respondents’ attitude (AT), subjective norm (SN), and perceived behavioral control (PBC) are positively correlated with their payment intentions (INT); 3) environmental cognition (EC) and environmental emotion (EE) positively moderate the relationships between AT and INT, and between SN and INT, posing significant indirect impacts on INT.  The study’s implications extend to informing government policies, suggesting that multi-entity cooperation, specifically public payment for APWM, can enhance agricultural non-point waste management.

    Letter

    Inactivated H9N2 vaccines developed with early strains do not protect against recent H9N2 viruses: Call for a change in H9N2 control policy

    Yanjing Liu, Qingqing Yu, Xiangyu Zhou, Wenxin Li, Xinwen He, Yan Wang, Guohua Deng, Jianzhong Shi, Guobin Tian, Xianying Zeng, Hualan Chen
    2024, 23(6): 2144-2148.  DOI: 10.1016/j.jia.2024.05.001
    Abstract ( )   PDF in ScienceDirect  

    A rapid and visual detection method for Crimean-Congo hemorrhagic fever virus by targeting S gene

    Xingqi Liu, Zengguo Cao, Boyi Li, Pei Huang, Yujie Bai, Jingbo Huang, Zanheng Huang, Yuanyuan Zhang, Yuanyuan Li, Haili Zhang, Hualei Wang
    2024, 23(6): 2149-2153.  DOI: 10.1016/j.jia.2024.03.050
    Abstract ( )   PDF in ScienceDirect