Anantharaman V,
Makarova K S, Burroughs A M, Koonin E V, Aravind L. 2013. Comprehensive
analysis of the HEPN superfamily: Identification of novel roles in
intra-genomic conflicts, defense, pathogenesis and RNA processing. Biology Direct, 8, 15.
Brown B, Wilkins M, Saha R. 2022. Rhodopseudomonas palustris: A biotechnology chassis. Biotechnology Advances, 60, 108001.
Cota-Sánchez J H, Remarchuk K,
Ubayasena K. 2006. Ready-to-use DNA extracted with a CTAB method adapted for
herbarium specimens and mucilaginous plant tissue. Plant Molecular Biology Reporter, 24, 161–167.
Du X, Huang R, Zhang Z, Zhang D,
Cheng J, Tian P, Wang Y, Zhai Z, Chen L, Kong X, Liu Y, Su P. 2021. Rhodopseudomonas palustris quorum sensing molecule pC-HSL induces systemic resistance to
TMV infection via up-regulation of NbSIPK/NbWIPK expressions in Nicotiana benthamiana. Phytopathology, 111, 500–508.
Duong-Ly K C, Gabelli S B. 2014.
Gel filtration chromatography (size exclusion chromatography) of proteins. Methods in Enzymology, 541, 105–114.
Farkas A, Nardai G, Csermely P,
Tompa P, Friedrich P. 2004. DUK114, the Drosophila orthologue of bovine brain
calpain activator protein, is a molecular chaperone. Biochemical Journal, 383, 165–170.
Hemming M L, Selkoe D J. 2005.
Amyloid beta-protein is degraded by cellular angiotensin-converting enzyme
(ACE) and elevated by an ACE inhibitor. Journal of Biological Chemistry, 280, 37644–37650.
Hull R. 2002. Matthews' Plant
Virology: Purification and Composition of Plant Viruses. 4th ed.
Beijing Science Press, China. pp. 75–107.
Ji P, Momol M T, Olson S M, Hong
J, Pradhanang P, Anith K N, Jones J B. 2005. New tactics for bacterial wilt
management on tomatoes in the Southern U.S. Acta Horticulturae, 695,
153–160.
Kim S W, Li Z, Moore P S,
Monaghan A P, Chang Y, Nichols M, John B. 2010. A sensitive non-radioactive
northern blot method to detect small RNAs. Nucleic Acids Research, 38, e98.
Lambrecht J A, Browne B A, Downs
D M. 2010. Members of the YjgF/YER057c/UK114 family of proteins inhibit
phosphoribosylamine synthesis in vitro. Journal of Biological Chemistry, 285, 34401–34407.
Lane L C. 1986. Propagation and
purification of RNA plant viruses. Methods in Enzymology, 118,
687–696.
Leitner-Dagan Y, Ovadis M, Zuker
A, Shklarman E, Ohad I, Tzfira T, Vainstein A. 2006. CHRD, a plant member of
the evolutionarily conserved YjgF family, influences photosynthesis and
chromoplastogenesis. Planta, 225, 89–102.
Li J G, Cao J, Sun F F, Niu D D,
Yan F, Liu H X, Guo J H. 2011. Control of Tobacco mosaic virus by PopW as a result of induced resistance in tobacco under greenhouse and field
conditions. Phytopathology, 101, 1202–1208.
Lindbo J A. 2007. TRBO: A
high-efficiency tobacco mosaic virus RNA-based overexpression vector. Plant Physiology, 145, 1232–1240.
Livak K J, Schmittgen T D. 2001.
Analysis of relative gene expression data using real-time quantitative PCR and
the 2(–Delta Delta C(T)) method. Methods, 25, 402–408.
López-Rosas I, Marchat L A,
Olvera B G, Guillen N, Weber C, Hernández de la Cruz O, Ruíz-García E,
Astudillo-de la Vega H, López-Camarillo C. 2014. Proteomic analysis identifies
endoribouclease EhL-PSP and EhRRP41 exosome protein as novel interactors of
EhCAF1 deadenylase. Journal of Proteomics, 111,
59–73.
Ma Y, Li S. 2022. Purification of
total RNAs and small RNAs from fruit tree leaf tissues. Methods in Molecular Biology, 2400, 217–224.
Mistiniene E, Pozdniakovaite N,
Popendikyte V, Naktinis V. 2005. Structure-based ligand binding sites of
protein p14.5, a member of protein family YER057c/YIL051c/YjgF. International Journal of Biological Macromolecules, 37,
61–68.
Miyakawa T, Hatano K I, Lee W C,
Kato Y, Sawano Y, Yumoto F, Nagata K, Tanokura M. 2005. Crystallization and
preliminary X-ray analysis of the YjgF/YER057c/UK114-family protein ST0811 from Sulfolobus tokodaii strain 7. Acta Crystallographica Section F: Structural Biology Communications, 61,
828–830.
Morishita R, Kawagoshi A,
Sawasaki T, Madin K, Ogasawara T, Oka T, Endo Y. 1999. Ribonuclease activity of
rat liver perchloric acid-soluble protein, a potent inhibitor of protein
synthesis. Journal of Biological Chemistry, 274,
20688–20692.
Nicaise V. 2014. Crop immunity
against viruses: Outcomes and future challenges. Frontiers in Plant Science, 5, 660.
Nookongbut P, Kantachote D,
Khuong N Q, Tantirungkij M. 2020. The biocontrol potential of acid-resistant Rhodopseudomonas palustris KTSSR54 and its exopolymeric substances against rice fungal
pathogens to enhance rice growth and yield. Biological Control (Theory
and Application in Pest Management), 150, 104354.
Ó’Fágáin C, Cummins P M, O’Connor
B F. 2017. Gel-filtration chromatography. Methods in Molecular Biology, 1485, 15–25.
Ohyama H, Sakai T, Agari Y, Fukui
K, Nakagawa N, Shinkai A, Masui R, Kuramitsu S. 2014. The role of ribonucleases
in regulating global mRNA levels in the model organism Thermus thermophilus
HB8. BMC Genomics, 15, 386.
Oka T, Tsuji H, Noda C, Sakai K,
Hong Y M, Suzuki I, Muñoz S, Natori Y. 1995. Isolation and characterization of
a novel perchloric acid-soluble protein inhibiting cell-free protein synthesis. Journal of Biological Chemistry, 270,
30060–30067.
Parsons L, Bonander N, Eisenstein
E, Gilson M, Kairys V, Orban J. 2003. Solution structure and functional ligand
screening of HI0719, a highly conserved protein from bacteria to humans in the
YjgF/YER057c/UK114 family. Biochemistry, 42, 80–89.
Pradhanang P M, Ji P, Momol M T,
Olson S M, Mayfield J L, Jones J B. 2005. Application of acibenzolar-S-methyl
enhances host resistance in tomato against Ralstonia solanacearum. Plant Disease, 89, 989–993.
Pu Y G, Jiang Y L, Ye X D, Ma X
X, Guo P C, Lian F M, Teng Y B, Chen Y, Zhou C Z. 2011. Crystal structures and
putative interface of Saccharomyces cerevisiae mitochondrial
matrix proteins Mmf1 and Mam33. Journal of Structural Biology, 175, 469–474.
Qin Y, Wang J, Wang F, Shen L,
Zhou H, Sun H, Hao K, Song L, Zhou Z, Zhang C, Wu Y, Yang J. 2019. Purification
and characterization of a secretory alkaline metalloprotease with highly potent
antiviral activity from Serratia marcescens Strain S3. Journal of Agricultural and Food Chemistry, 67,
3168–3178.
Sawasaki T, Morishita R, Ozawa A,
Ogasawara T, Madin K, Endo Y. 1999. Mechanism of ribosome RNA apurinic site
specific lyase. Nucleic Acids Symposium, 42,
257–258.
Sinha S, Rappu P, Lange S C,
Mäntsälä P, Zalkin H, Smith J L. 1999. Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF
family. Proceedings of the National Academy of Sciences of the United States of America, 96, 13074–13079.
Song Y, Wilson A J, Zhang X C,
Thoms D, Sohrabi R, Song S, Geissmann Q, Liu Y, Walgren L, He S Y, Haney C H.
2021. Feronia restricts Pseudomonas in the rhizosphere microbiome via regulation of reactive oxygen species. Nature Plants, 7,
644–654.
Su P, Feng T, Zhou X, Zhang S,
Zhang Y, Cheng J, Luo Y, Peng J, Zhang Z, Lu X, Zhang D, Liu Y. 2015. Isolation
of Rhp-PSP, a member of YER057c/YjgF/UK114 protein family with antiviral
properties, from the photosynthetic bacterium Rhodopseudomonas palustris strain JSC-3b. Scientific Reports, 5, 16121.
Su P, Tan X, Li C, Zhang D, Cheng
J, Zhang S, Zhou X, Yan Q, Peng J, Zhang Z, Liu Y, Lu X. 2017. Photosynthetic
bacterium Rhodopseudomonas palustris GJ-22 induces systemic
resistance against viruses. Microbial Biotechnology, 10,
612–624.
Thakur K G, Praveena T, Gopal B.
2010. Mycobacterium tuberculosis Rv2704 is a member of the YjgF/YER057c/UK114
family. Proteins, 78, 773–778.
Vorholt J A. 2012. Microbial life
in the phyllosphere. Nature Reviews Microbiology, 10,
828–840.
Williams D B, Barry Carter C.
2009. The Transmission Electron Microscope. Springer, USA.
Wu X, Chen Y, Li C, Zhang X, Tan
X, Lv L, Liu Y, Zhang D. 2021. GroEL protein from the potential biocontrol
agent Rhodopseudomonas palustris enhances resistance to rice
blast disease. Pest Management Science, 77,
5445–5453.
Zern M A, Yap S H, Strair R K,
Kaysen G A, Shafritz D A. 1984. Effects of chronic renal failure on protein
synthesis and albumin messenger ribonucleic acid in rat liver. The Journal of Clinical Investigation, 73, 1167–1174.
Zhang H M, Gao Y, Li M, Chang W
R. 2010. Crystal structure of the PSPTO-PSP protein from Pseudomonas
syringae pv. tomato str. DC3000 in complex with D-glucose. Biochemical and Biophysical Research Communications, 397,
82–86.
Zhu F, Zhang P, Meng Y F, Xu F,
Zhang D W, Cheng J, Lin H H, Xi D H. 2013. Alpha-momorcharin, a RIP produced by
bitter melon, enhances defense response in tobacco plants against diverse plant
viruses and shows antifungal activity in vitro. Planta Berlin, 237, 77–88.
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