Anderson J L, Mulligan T S, Shen
M C, Wang H, Scahill C M, Tan F J, Du S J, Busch-Nentwich E M, Farber S A.
2017. mRNA processing in mutant zebrafish lines generated by chemical and
CRISPR-mediated mutagenesis produces unexpected transcripts that escape
nonsense-mediated decay. PLoS Genetics, 13, e1007105.
Behm-Ansmant I, Kashima I,
Rehwinkel J, Saulière J, Wittkopp N, Izaurralde E. 2007. mRNA quality control:
An ancient machinery recognizes and degrades mRNAs with nonsense codons. FEBS Letters, 581, 2845–2853.
Cartegni L, Chew S L, Krainer A
R. 2002. Listening to silence and understanding nonsense: exonic mutations that
affect splicing. Nature Reviews Genetics, 3,
285–298.
Chang Y F, Imam J S, Wilkinson M
F. 2007. The nonsense-mediated decay RNA surveillance pathway. Annual Review of Biochemistry, 76, 51–74.
Chen D, Tang J X, Li B, Hou L,
Wang X, Kang L. 2018. CRISPR/Cas9-mediated genome editing induces exon skipping
by complete or stochastic altering splicing in the migratory locust. BMC Biotechnology, 18, 60.
Chen J, Liang Z K, Liang Y K,
Pang R, Zhang W Q. 2013. Conserved microRNAs miR-8-5p and miR-2a-3p modulate
chitin biosynthesis in response to 20-hydroxyecdysone signaling in the brown
planthopper, Nilaparvata lugens. Insect Biochemistry and Molecular Biology, 43, 839–848.
Chen J X, Li W X, Lyu J, Hu Y T,
Huang G, Zhang W Q. 2021. CRISPR/Cas9-mediated knockout of the NlCSAD gene results in darker cuticle pigmentation and a reduction in female fecundity
in Nilaparvata lugens (Hemiptera: Delphacidae). Comparative Biochemistry and Physiology (Part A: Molecular &
Integrative Physiology), 256, 110921.
Chen W W, Kang K, Yang P, Zhang W
Q. 2019. Identification of a sugar gustatory receptor and its effect on
fecundity of the brown planthopper Nilaparvata lugens. Insect Science, 26, 441–452.
Diaz de Arce A J, Noderer W L,
Wang C L. 2018. Complete motif analysis of sequence requirements for
translation initiation at non-AUG start codons. Nucleic Acids Research, 46, 985–994.
Holbrook J A, Neu-Yilik G, Hentze
M W, Kulozik A E. 2004. Nonsense-mediated decay approaches the clinic. Nature Genetics, 36, 801–808.
Hosur V, Low B E, Li D, Stafford
G A, Kohar V, Shultz L D, Wiles M V. 2020. Genes adapt to outsmart
gene-targeting strategies in mutant mouse strains by skipping exons to
reinitiate transcription and translation. Genome Biology, 21,
168.
Huin V, Buée L, Behal H,
Labreuche J, Sablonnière B, Dhaenens C M. 2017. Alternative promoter usage
generates novel shorter MAPT mRNA transcripts in Alzheimer’s disease and
progressive supranuclear palsy brains. Scientific Reports, 7,
12589.
Isken O, Maquat L E. 2007.
Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA
function. Genes & Development, 21, 1833–1856.
Isken O, Maquat L E. 2008. The
multiple lives of NMD factors: Balancing roles in gene and genome regulation. Nature Reviews Genetics, 9, 699–712.
Jia Y, Qin C, Traw M B, Chen X,
He Y, Kai J, Yang S, Wang L, Hurst L D. 2022. In rice splice variants that restore
the reading frame after frameshifting indel introduction are common, often
induced by the indels and sometimes lead to organism-level rescue. PLoS Genetics, 18, e1010071.
Jinek M, Chylinski K, Fonfara I,
Hauer M, Doudna J A, Charpentier E. 2012. A programmable dual-RNA-guided DNA
endonuclease in adaptive bacterial immunity. Science, 337,
816–821.
Jinek M, East A, Cheng A, Lin S,
Ma E, Doudna J. 2013. RNA-programmed genome editing in human cells. eLife, 2, e00471.
Kapahnke M, Banning A, Tikkanen
R. 2016. Random splicing of several exons caused by a single base change in the
target exon of CRISPR/Cas9 mediated gene knockout. Cells, 5, 45.
Kearse M G, Wilusz J E. 2017.
Non-AUG translation: A new start for protein synthesis in eukaryotes. Genes & Development, 31, 1717–1731.
Kochetov A V. 2008. Alternative
translation start sites and hidden coding potential of eukaryotic mRNAs. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 30, 683–691.
Lalonde S, Stone O A, Lessard S,
Lavertu A, Desjardins J, Beaudoin M, Rivas M, Stainier D Y R, Lettre G. 2017.
Frameshift indels introduced by genome editing can lead to in-frame exon
skipping. PLoS ONE, 12, e0178700.
Lieber M R. 2010. The mechanism
of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annual Review of Biochemistry, 79, 181–211.
Lykke-Andersen J, Bennett E J.
2014. Protecting the proteome: Eukaryotic cotranslational quality control
pathways. The Journal of Cell Biology, 204,
467–476.
Maier K, He Y, Esser P R, Thriene
K, Sarca D, Kohlhase J, Dengjel J, Martin L, Has C. 2016. Single amino acid
deletion in kindlin-1 results in partial protein degradation which can be
rescued by chaperone treatment. The Journal of Investigative Dermatology, 136, 920–929.
Mali P, Yang L, Esvelt K M, Aach
J, Guell M, DiCarlo J E, Norville J E, Church G M. 2013. RNA-guided human
genome engineering via Cas9. Science, 339, 823–826.
Mou H, Smith J L, Peng L, Yin H,
Moore J, Zhang X O, Song C Q, Sheel A, Wu Q, Ozata D M, Li Y, Anderson D G,
Emerson C P, Sontheimer E J, Moore M J, Weng Z, Xue W. 2017.
CRISPR/Cas9-mediated genome editing induces exon skipping by alternative
splicing or exon deletion. Genome Biology, 18, 108.
Rajaratnam G, Supeinthiran A,
Meier R, Su K F Y. 2018. CRISPR/Cas9 deletions in a conserved exon of
Distal-less generates gains and losses in a recently acquired morphological
novelty in flies. iScience, 10, 222–233.
Smits A H, Ziebell F, Joberty G,
Zinn N, Mueller W F, Clauder-Münster S, Eberhard D, Fälth S M, Grandi P, Jakob
P, Michon A M, Sun H, Tessmer K, Bürckstümmer T, Bantscheff M, Steinmetz L M,
Drewes G, Huber W. 2019. Biological plasticity rescues target activity in
CRISPR knock outs. Nature Methods, 16, 1087–1093.
Sterne-Weiler T, Sanford J R.
2014. Exon identity crisis:
Disease-causing mutations that disrupt the splicing code. Genome Biology, 15, 201.
Tazi J, Bakkour N, Stamm S. 2009.
Alternative splicing and disease. Biochimica et Biophysica Acta, 1792, 14–26.
Tuladhar R, Yeu Y, Piazza J T,
Tan Z, Clemenceau J R, Wu X, Barrett Q, Herbert J, Mathews D H, Kim J, Hwang T
H, Lum L. 2019. CRISPR-Cas9-based mutagenesis frequently provokes on-target
mRNA misregulation. Nature Communications, 10, 4056.
Xue W H, Xu N, Chen S J, Liu X Y,
Zhang J L, Xu H J. 2021. Neofunctionalization of a second insulin receptor gene
in the wing-dimorphic planthopper, Nilaparvata lugens. PLoS
Genetics, 17, e1009653.
Zhao Y, Huang G, Zhang W Q. 2019.
Mutations in NlInR1 affect normal growth and lifespan in the brown
planthopper Nilaparvata lugens. Insect Biochemistry and Molecular Biology, 115, 103246.
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