Aarts M G M, Hodge R, Kalantidis K, Florack D, Wilson Z A, Mulligan B J, Stiekema W J, Scott R, Pereira A. 1997. The Arabidopsis MALE STERILITY 2 protein shares similarity with reductases in elongation/condensation complexes. The Plant Journal, 12, 615–623.
Aarts M G M, Keijzer C J, Stiekema W J, Pereira A. 1995. Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. The Plant Cell, 7, 2115–2127.
Abdi H. 2007. The bonferonni and Šidák corrections for multiple comparisons. [2017-04-12]. http://www.utdallas.edu/~herve/Abdi-Bonferroni2007-pretty.pdf
Andersen M N, Asch F, Wu Y, Jensen C R, Naested H, Mogensen V O, Koch K E. 2002. Soluble invertase expression is an early target of drought stress during the critical, abortion-sensitive phase of young ovary development in maize. Plant Physiology, 130, 591–604.
Bate N J, Niu X P, Wang Y W, Reimann K S, Helentjaris T G. 2004. An invertase inhibitor from maize localizes to the embryo surrounding region during early kernel development. Plant Physiology, 134, 246–254.
Benjamini Y, Yekutieli D. 2001. The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics, 29, 1165–1188.
Chen Y Z, Cao J. 2015. Comparative analysis of dof transcription factor family in maize. Plant Molecular Biology Reporter, 33, 1245–1258.
Dong Y P, Fan G Q, Zhao Z L, Deng M J. 2014. Transcriptome expression profiling in response to drought stress in Paulownia Australis. International Journal of Molecular Sciences, 15, 4583–4607.
Etxebeste O, Herrero-Garcia E, Cortese MS, Garzia A, Oiartzabal-Arano E, de los Rios V, Ugalde U, Espeso E A. 2012. GmcA is a putative glucose-methanol-choline oxidoreductase required for the induction of asexual development in Aspergillus nidulans. PLoS ONE, 7, e40292.
Fu J J, Cheng Y B, Linghu J J, Yang X H, Kang L, Zhang Z X, Zhang J, He C, Du X M, Peng Z Y, Wang B, Zhai L H, Dai C M, Xu J B, Wang W D, Li X R, Zheng J, Chen L, Luo L H, Liu J J, et al. 2013. RNA sequencing reveals the complex regulatory network in the maize kernel. Nature Communications, 4, 2832.
Gao J, Zhang Y, Zhang C L, Qi F Y, Li X P, Mu S H, Peng Z H. 2014. Characterization of the floral transcriptome of Moso Bamboo (Phyllostachys edulis) at different flowering developmental stages by transcriptome sequencing and RNA-Seq analysis. PLoS ONE, 9, e98910.
Hao Z F, Li X H, Liu X L, Xie C X, Li M S, Zhang D G, Zhang S H. 2010. Meta-analysis of constitutive and adaptive QTL for drought tolerance in maize. Euphytica, 174, 165–177.
Hao Z F, Li X H, Su Z J, Xie C X, Li M S, Liang X L, Weng J F, Zhang D G, Li L, Zhang S H. 2011. A proposed selection criterion for drought resistance across multiple environments in maize. Breeding Science, 61, 101–108.
Kakumanu A, Ambavaram M M R, Klumas C, Krishnan A, Batlang U, Myers E, Grene R, Pereira A. 2012. Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq. Plant Physiology, 160, 846–867.
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Research, 36, 480–484.
Li E, Wang S, Liu Y, Chen J G, Douglas C J. 2011. OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana. The Plant Journal, 67, 328–341.
Li R Q, Yu C, Li Y R, Lam T W, Yiu S M, Kristiansen K, Wang J. 2009. SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics, 25, 1966–1967.
Liu C L, Hao Z F, Zhang D G, Xie C X, Li M S, Zhang X C, Yong H J, Zhang S H, Weng J F, Li X H. 2015. Genetic properties of 240 maize inbred lines and identity-by-descent segments revealed by high-density SNP markers. Molecular Breeding, 35, 1–12.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(T) (-Delta Delta C) method. Methods, 25, 402–408.
Lokesh, kiranmai, Pandurangaiah M, Babu S, Kumar N, Sudhakar C. 2013. Role of plant fatty acid elongase (3 keto acyl-CoA Synthase) gene in cuticular wax biosynthesis. Journal of Agriculture and Allied Sciences, 2, 35–42.
Matsuno M, Compagnon V, Schoch G A, Schmitt M, Debayle D, Bassard J E, Pollet B, Hehn A, Heintz D, Ullmann P, Lapierre C, Bernier F, Ehlting J, Werck-Reichhart D. 2009. Evolution of a novel phenolic pathway for pollen development. Science, 325, 1688–1692.
Mortazavi A, Williams B A, Mccue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods, 5, 621–628.
Nakashima K, Yamaguchi-Shinozaki K, Shinozaki K. 2014. The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Frontiers in Plant Science, 5, 621–627.
Nariya H, Inouye S. 2002. Activation of 6-phosphofructokinase via phosphorylation by Pkn4, a protein Ser/Thr kinase of Myxococcus xanthus. Molecular Microbiology, 46, 1353–1366.
Okoniewski M J, Miller C J. 2006. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. BMC Bioinformatics, 7, 276–279.
Osakabe Y, Yamaguchi-Shinozaki K, Shinozaki K, Tran L S. 2014. ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity. The New Phytologist, 202, 35–49.
Perez-Diaz J, Wu T M, Perez-Diaz R, Ruiz-Lara S, Hong C Y, Casaretto J A. 2014. Organ- and stress-specific expression of the ASR genes in rice. Plant Cell Reports, 33, 61–73.
Saini H S. 1997. Effects of water stress on male gametophyte development in plants. Sex Plant Reprot, 10, 67–73.
Shen C X, Li D, He R H, Fang Z, Xia Y M, Gao J, Shen H, Cao M L. 2014. Comparative transcriptome analysis of RNA-seq data for cold-tolerant and cold-sensitive rice genotypes under cold stress. Journal of Plant Biology, 57, 337–348.
Shinozaki K, Yamaguchi-Shinozaki K, Seki M. 2003. Regulatory network of gene expression in the drought and cold stress responses. Current Opinion in Plant Biology, 6, 410–417.
Tange T, Nott A, Moore M J. 2004. The ever-increasing complexities of the exon junction complex. Current Opinion in Cell Biology, 16, 279–284.
Todaka D, Shinozaki K, Yamaguchi-Shinozaki K. 2015. Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants. Frontiers in Plant Science, 6, 84.
Wang W J, Liu X W, Gai X S, Ren J J, Liu X F, Cai Y L, Wang Q, Ren H Z. 2015. Cucumis sativus L. WAX2 plays a pivotal role in wax biosynthesis, influencing pollen fertility and plant biotic and abiotic stress responses. Plant and Cell Physiology, 56, 1339–1354.
Wang Z, Gerstein M, Snyder M. 2009. RNA-seq: A revolutionary tool for transcriptomics. Nature Reviews Genetics, 10, 57–63.
Xiong L, Schumaker K S, Zhu J K. 2002. Cell signaling during cold, drought, and salt stress. The Plant Cell, 14, 165–183.
Xu H, Gao Y, Wang J B. 2012. Transcriptomic analysis of rice (Oryza sativa) developing embryos using the RNA-Seq technique. PLoS ONE, 7, e30646.
Yin F Q, Qin C, Gao J, Liu M, Luo X R, Zhang W Y, Liu H J, Liao X H, Shen Y U, Mao L K, Zhang Z M, Lin H J, Lubberstedt T, Pan G T. 2015. Genome-wide identification and analysis of drought-responsive genes and microRNAs in tobacco. Inter national Journal of Molecular Sciences, 16, 5714–5740.
Zhuang Y, Ren G J, Yue G D, Li Z X, Qu X, Hou G H, Zhu Y, Zhang J R. 2007. Effects of water-deficit stress on the transcriptomes of developing immature ear and tassel in maize. Plant Cell Reports, 26, 2137–2147.