Scientia Agricultura Sinica ›› 2017, Vol. 50 ›› Issue (20): 3837-3847.doi: 10.3864/j.issn.0578-1752.2017.20.001

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS •     Next Articles

Phenotypical Analysis and Gene Mapping of Abnormal Floral Organ Number Mutant afon1 in Rice (Oryza sativa L.)

YANG ChengCong, LIANG Rong, QIN Ran, ZENG DongDong, JIN XiaoLi, SHI ChunHai   

  1. Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058
  • Received:2017-03-21 Online:2017-10-16 Published:2017-10-16

Abstract: 【Objective】The abnormal floral organ number mutant of rice was used to study the molecular mechanisms of floral organ development, and to identify the related genes of floral organ in rice. 【Method】In present study, a rice mutant, abnormal floral organ number1 (afon1) was isolated from an indica cultivar Zhenong 34 M2 population by mutagenesis with ethyl methane sulfonate (EMS). At flowering stage, five panicles from afon1 and Zhenong 34 were randomly selected to observe the morphological phenotype, cytological features and pollen fertility by histology analysis and scanning electron microscopy, respectively. At mature stage, ten plants from afon1 and Zhenong 34 were randomly chosen for measuring the main agronomic traits, such as plant height, number of tillering, panicle length, number of floret per panicle, number of filled grain per panicle and 1 000-grain weight. One hundred plump seeds were selected for calculating the germination potential and germination rate of the mutant afon1 and wild type. The F2 population from crossing of afon1 with WT Zhenong 34 and Zhenongda 104 were used for genetic analysis and gene mapping, respectively. Then, the DNA sequencing was conducted, the model of AFON1 protein was built and the space structure for AFON1 protein was analyzed. Moreover, the expression of candidate gene and floral organ number associated genes were detected by real-time PCR. 【Result】Compared with the wild type, the floral organ number of 59.64% spikelet was abnormal in mutant afon1, which most of them had a glume-like organ on the side of the leman and there were 2-4 rounds of floral organ number increased at the same time in others. Furthermore, the plant height and 1 000-grain weight of afon1 were visibly higher, while the seed setting rate was significantly reduced. The results of the genetic analysis showed that the phenotype of F1 population from the crossing of afon1 with Zhenong 34 was normal and the segregation ratio of wild-type and mutant phenotype plants from F2 population fitted a ratio of 3﹕1, which revealed that the mutant trait of afon1 was controlled by a single recessive nuclear gene. The afon1 was further mapped on the arm of chromosome 1 between InDel markers 1M5 and 1M18 with a physical distance of 73 kb, where there were 6 annotated genes. The sequencing results between the mutant afon1 and the wild type illustrated that there was a single base-pair substitution of T (565th) to A on the exon of LOC_Os01g67430 resulting in the mutation of Trp (189th) to Arg. Protein sequencing and structure analysis revealed that there was a Lipase_3 domain and the mutation in the region changed the space structure of AFON1 obviously. The real-time PCR result showed that the expression of LOC_Os01g67430 in young panicle increased significantly, while the expression had no obvious difference in root, stem and leaf. Additionally, the expression of floral organ number related genes FON1 and FON2/4 was obviously increased in floral organ at young panicle developmental stage. 【Conclusion】The LOC_Os01g67430 was speculated as the gene afon1 regulating the number of floral organ by influencing the expression of corresponding genes which determined the number of floral organ.

Key words: rice, abnormal floral organ number1 (afon1), gene mapping, expression analysis

[1]    李云峰, 杨正林, 凌英华, 王楠, 任德勇, 王增, 何光华. 水稻多小花小穗突变体mf1的鉴定与基因定位. 作物学报, 2011, 37(2): 280-285.
LI Y F, YANG Z L, LING Y H, WANG N, REN D Y, WANG Z, HE G H. Characterization and gene mapping of a spikelet mutant mf1 in rice. Acta Agronomic Sinica, 2011, 37(2): 280-285. (in Chinese)
[2]    BOWMAN J L, SMYTH D R, MEYEROWITZ E M. Genetic interactions among floral homeotic genes of Arabidopsis. Development, 1991, 112(1): 1-20.
[3]    COEN E S, MEYEROWITZ E M. The war of the whorls: genetic interactions controlling flower development. Nature, 1991, 353(6339): 31-37.
[4]    DITTA G, PINYOPICH A, ROBLES P, PELAZ S, YANOFSKY M. F. The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity. Current Biology, 2004, 14(21): 1935-1940.
[5]    GÜNTER T, HEINZ S. Plant biology: floral quartets. Nature, 2001, 409(6819): 469-471.
[6]    WEIGEL D, MEYEROWITZ E M. The ABCs of floral homeotic genes. Cell, 1994, 78: 203-209.
[7]    龙珏臣, 庄慧, 陈欢, 汪玲, 沈亚林, 曾晓琴, 崔馨允, 桑贤春, 何光华, 李云峰. 水稻颖壳退化突变体degenerated hull 3(dh3)的表型分析与基因定位. 作物学报, 2016, 42(6): 813-819.
LONG J C, ZHUANG H, CHEN H, WANG L, SHEN Y L, ZENG X Q, CUI X Y, SANG X C, HE G H, LI Y F. Phenotypic analysis and gene mapping of degenerated hull 3 (dh3) mutant in rice (Oryza sativa L.). Acta Agronomic Sinica, 2016, 42(6): 813-819. (in Chinese)
[8]    BAI X F, HUANG Y, MAO D H, WEN M, ZHANG L, XING Y Z. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Scientific reports, 2016, 6: 19022.
[9]    NAGASAWA N, MIYOSHI M, SANO Y, SATOH H, HIRANO H, SAKAI H, NAGATO Y. SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice. Development, 2003, 130(4): 705-718.
[10]   LI H G, XUE D W, GAO Z Y, YAN M X, XU W Y, XING Z, HUANG D N, QIAN Q, XUE Y B. A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice. The Plant Journal, 2009, 57(4): 593-605.
[11]   REN D Y, LI Y F, ZHAO F M, SANG X C, SHI J Q, WANG N, GUO S, LING Y H, ZHANG C W, YANG Z L, HE G H. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice. Plant physiology, 2013, 162(2): 872-884.
[12]   SUZAKI T, SATO M, ASHIKARI M, MIYOSHI M, NAGATO Y, HIRANO H Y. The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1. Development, 2004, 131(22): 5649-5657.
[13]   SUZAKI T, TORIBA T, FUJIMOTO M, TSUTSUMI N, KITANO H, HIRANO H Y. Conservation and diversification of meristem maintenance mechanism in Oryza sativa: function of the FLORAL ORGAN NUMBER2 gene. Plant and Cell Physiology, 2006, 47(12): 1591-1602.
[14]   JIANG L, QIAN Q, MAO L, ZHOU Q Y, ZHAI W X. Characterization of the rice floral organ number mutant fon3. Journal of Integrative Plant Biology, 2005, 47(1): 100-106.
[15]   CHU H W, QIAN Q, LIANG W Q, YIN C S, TAN H X, YAO X, YUAN Z, YANG J, HUANG H, LUO D, MA H, ZHANG D B. The FLORAL ORGAN NUMBER4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice. Plant Physiology, 2006, 142(3): 1039-1052.
[16]   张向前, 邹金松, 朱海涛, 李晓燕, 曾瑞珍. 水稻早熟多子房突变体fon5的遗传分析和基因定位. 遗传, 2008, 30(10): 1349-1355.
ZHANG X Q, ZOU J S, ZHU H T, LI X Y, ZENG R Z. Genetic analysis and gene mapping of an early flowering and multi-ovary mutant in rice (Oryza sativa L.). Hereditas, 2008, 30(10): 1349-1355. (in Chinese)
[17]   赵福永, 王洁雅, 黄显波, 邓则勤, 林成豹, 严寒, 田志宏. 水稻花器官数目突变体fon6的研究初报. 杂交水稻, 2011, 26(2): 52-57.
ZHAO F Y, WANG J Y, HAUNG X B, DENG Z Q, LIN C B, YAN H, TIAN Z H. A preliminary study on the floral organ number mutant fon6 in rice. Hybrid Rice, 2011, 26(2): 52-57. (in Chinese)
[18]   LI Y , XU P Z, ZHANG Q F, ZHANG H Y, PENG H, WANG X D, WU X J. Characterization and identification of a novel mutant fon(t) on floral organ number and floral organ identity in rice. Journal of Genetics and Genomics, 2007, 34(8): 730-737.
[19]   ZHANG J R, TANG W, HUANG Y L, NIU X L, ZHAO Y, HAN Y, LIU Y S. Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice. Journal of experimental botany, 2015, 66(1): 99-112.
[20]   SUN Q, ZHOU D X. Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development. Proceedings of the National Academy of Sciences of the United States of America, 2008, 105(36): 13679-13684.
[21]   Zhang B Y, Wu S H, Zhang Y E, XU T, GUO F F, TANG H S, LI X, WANG P F, QIAN W F, XUE Y B. A high temperature-dependent mitochondrial lipase EXTRA GLUME1 promotes floral phenotypic robustness against temperature fluctuation in rice (Oryza sativa L.). PLoS Genetics, 2016, 12(7): e1006152.
[22]   CLARK S E, RUNNING M P, MEYEROWITZ E M. CLAVATA3 is a specific regulator of shoot and floral meristem development affecting the same processes as CLAVATA1. Development, 1995, 121(7): 2057-2067.
[23]   Bleckrnann A, Weidtkamp-Peters S, Seidel C A M, Simon R. Stem cell signaling in Arabidopsis requires CRN to localize CLV2 to the plasma membrane. Plant Physiology, 2010, 152(1): 166-176.
[24]   CLARK S E, RUNNING M P, MEYEROWITZ E M. CLAVATA1, a regulator of meristem and flower development in Arabidopsis. Development, 1993, 119(2): 397-418.
[25]   NARDMANN J, WERR W. The shoot stem cell niche in angiosperms: Expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution. Molecular Biology Evolution, 2006, 23(12): 2492-2504.
[26]   ZENG D D, QIN R, ALAMIN M, LIANG R, YANG C C, JIN X L, SHI C H. DBOP specifies palea development by suppressing the expansion of the margin of palea in rice. Genes & Genomics, 2016, 38(11): 1095-1103.
[27]   钱春荣, 王俊河, 冯延江, 王麒, 于洋, 宫秀杰. 不同浸种时间对水稻种子发芽势和发芽率的影响. 中国农学通报, 2008, 24(9): 183-185.
QIAN C R, WANG J H, FENG Y J, WANG Q, YU Y, GONG X J. Effects of different soaking time on germination potential and germination rate of rice seeds. Chinese Agricultural Science Bulletin, 2008, 24(9): 183-185. (in Chinese)
[28]   MURRAY M G, THOMPSON W F. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 1980, 8(19): 4321-4326.
[29]   MCCOUCH S R, CHEN X L, PANAUD O, TEMNYKH S, XU, Y B, CHO, Y G, HUANG N, ISHII T, BLAIR M. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Molecular Biology, 1997, 35(1): 89-99.
[30]   CAI Q, YUAN Z, CHEN M J, YIN C S, LUO Z J, ZHAO X X, LIANG W Q, HU J P, ZHANG D B. Jasmonic acid regulates spikelet development in rice. Nature communications, 2014, 5: 3476.
[31]   LEE D Y, LEE J, MOON S, PARK S Y, AN G. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem. The Plant Journal, 2007, 49(1): 64-78.
 
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