Scientia Agricultura Sinica ›› 2013, Vol. 46 ›› Issue (2): 376-384.doi: 10.3864/j.issn.0578-1752.2013.02.017

• ANIMAL SCIENCE·RESOURCE INSECT • Previous Articles     Next Articles

Screening Differentially Expressed Genes of Skin Tissue of Different Flowers Patterns of Hu Sheep

 孙伟, 倪蓉, 殷金凤, 丁家桐, 张有法, 陈玲, 吴文忠, 周洪   

  1. 1.Animal Science and Technology College, Yangzhou University, Yangzhou 225009, Jiangsu
    2.Animal Science and Veterinary Medicine Bureau of Suzhou, Suzhou 215200, Jiangsu
    3.Forestation, Herding, Fishing Bureau of Suining Country of Xuzhou,   Suining 221200, Jiangsu
  • Received:2012-10-17 Online:2013-01-15 Published:2012-12-20

Abstract: 【Objective】The molecular genetic mechanism of China’s unique white lambskin breed different flowers patterns of Hu sheep and hair follicle formation were studied.【Method】The article focused on screening differentially expressed genes of new born Hu-sheep’s skin tissue by Agilent gene chip.【Result】 Differential expression analysis revealed that 1067, 2071 and 3879 differentially expressed genes could be screened from 3 groups of large flowers and small flowers, and compared the 3 groups it could find that there were 137 genes in common. Differentially expressed genes classified by GO (Gene Ontology) analysis mainly involved in cell differentiation, proliferation, apoptosis, growth, immune response, ion transport etc. biological progresses. In addition, the RT-PCR results of 3 differentially expressed genes were consistent with that of gene chip.【Conclusion】Combined with the related literatures, BMP7, MMP2, SNAI1, SFXN1, CDKNIC, MT3, POU1F1 etc. might have important effects on the formation of large flowers and small flowers and could be regarded as candidate genes, and offered the basic data for the further study on the molecule genetic mechanism of hair follicles’ formation in Hu sheep.

Key words: Hu sheep , hair follicles , microarray

[1]彭静, 赵晓枫, 林嘉,徐迎林. 湖羊生长曲线拟合研究. 第十六次全国动物遗传育种学术讨论, 2011: 30.

Peng J, Zhao X F, Lin J, Xu Y L. The research on growth curve fitting of Hu-sheep. The Sixteenth National Symposium on Animal Genetic Breeding, 2011: 30. (in Chinese)

[2]席斌, 高雅琴, 杜天庆. 影响中国小湖羊皮品质的因素及建议. 黑龙江畜牧兽医, 2007, 11: 48-50.

Xi B, Gao Y Q, Du T Q. The factors and suggestions of affecting Hu-sheepskin quality. Heilongjiang Animal Husbandry and Veterinary Medicine, 2007, 11: 48-50. (in Chinese)

[3]何晓曼. BMP家族成员在毛囊生长发育方面的研究. 新疆畜牧业, 2011(6): 36-37.

He X M. A research on BMP family in hair follicle growth and development. The animal husbandry of Xinjiang, 2011(6): 36-37. (in Chinese)

[4]吕雪峰, 郑文新. 绒山羊皮肤毛囊的研究进展与前景. 中国畜牧兽医, 2010, 37(11): 25-27.

Lü X F, Zheng W X. Research progress and perspective in skin follicle of Cashmere foat. China Animal Husbandry and Veterinary Medicine, 2010, 37(11): 25-27. (in Chinese)

[5]张燕军, 李金泉, 尹俊, 高爱琴, 张文广, 赵艳红. 内蒙古绒山羊Hoxa 基因在毛囊中的表达. 湖北农业科学, 2010, 49(3): 517-519.

Zhang Y J, Li J Q, Yin J, Gao A Q, Zhang W G, Zhao Y H. Hoxa7 gene expression in hair follicle of Inner Mongolian Cashmere goat. Hubei Agricultural Sciences, 2010, 49(3): 517-519. (in Chinese)

[6]Sander G R, Powell B C. Structure and expression of the ovine Hoxc-13 gene. Gene, 2004, 327(1): 107-116.

[7]杨希川, 郝飞. 毛囊的分子遗传学. 国外医学遗传学分册, 2002, 25(4): 245-247.

Yang X C, Hao F. The molecular genetics of hair follicle. Foreign Medical Sciences Section of Genetics, 2002, 25(4): 245-247. (in Chinese)

[8]额尔和花, 丁伟, 李颖康, 王天新. 滩羊毛皮特性及毛囊发育相关基因的研究进展. 畜牧与饲料科学, 2010, 31(5): 18-20.

Eerhehua, Ding W, Li Y K, Wang T X. Research progress in fur properties and hair follicle development-related genes of Tan sheep. Animal Husbandry and Feed Science, 2010, 31(5): 18-20. (in Chinese)

[9]Kuczek E, Rogers G E. Sheep keratins: haracterization of cDNA clones for the glycine + tyrosine-rich wool proteins using a synthetic probe. European Journal of Biochemistry, 1985, 146(1): 89-93.

[10]Powell B C, Sleigh M J, Ward  K A, Rogrs G E. Mammalian keratin gene families: organisation of genes coding for the B2 high-sulphur proteins of sheep wool. Nucleic Acids Research, 1983, 11(16): 5327-5346.

[11]Kuczek E S, Rogers G E. Sheep wool (glycine + tyrosin)-rich keratin genes. A family of low sequence homology. European Journal of Biochemistry, 1987, 166(1): 79-85.

[12]Powell B C, Nesci A, Rogers G E. Regulation of keratin gene expression in hair follicle differentiation. Annals of The New York Academy of Sciences, 1991, 642: 1-20.

[13]Fratini A, Powell B C, Rogers G E. Sequence, expression, and evolutionary conservation of a gene encoding a glycine/tyrosine-rich keratin-associated protein of hair. The Journal of Biological Chemistry, 1993, 268(6): 4511-4518.

[14]Nixon A J, Ford C A, Wildermoth J E, Craven A J, Ashby M G, Pearson A J. Regulation of prolactin receptor expression in ovine skin in relation to circulating prolactin and wool follicle growth status. Journal of Endocrinology, 2002, 172(3): 605-614.

[15]Suttonr R, Ward W G, Raphael K A, Cam G R. Growth factor expression in skin during wool follicle development. Comparative Biochemistry and Physiology PartB: Biochemistry Molecular Biology, 1995, 110(4): 697-705.

[16]王睿智, 尹逊河, 王慧, 成子强. 青山羊表皮生长因子基因表达与毛囊发育特性的研究. 中国农业科学, 2012, 45(6): 1176-1182.

Wang R Z, Yin X H, Wang H, Cheng Z Q. Studies on expression characteristics of EGF and development characteristics of hair follicle of Gray goat. Scientia Agricultura Sinica, 2012, 45(6): 1176-1182. (in Chinese)

[17]Kim B K, Baek I C, Lee H Y, Kim J K,Song H H,Yoon S K. Gene expression profile of the skin in the‘hairpoor’ (HrHp) mice by microarray analysis. BMC Genomics, 2010, 11: 640.

[18]Zarach J M, Beaudoin G M, Coulombe P A, Thompson C C. The co-repressor hairless has a role in epithelial cell differentiation in the skin. Development, 2004, 131(17): 4189-4200.

[19]孙伟, 王鹏, 丁家桐, 马月辉, 关伟军, 储明星, 李碧春, 吴文忠, 陈玲. 湖羊Myostain 和Myogenin基因表达的发育性变化及与屠宰性状的关联分析. 中国农业科学, 2010, 43(24): 5129-5136.

Sun W, Wang P, Ding J T, Ma Y H, Guan W J , Chu M X, Li B C, Wu W Z, Chen L. Developmental changes of gene expression of Myostain and Myogenin genes and their association analysis with carcass traits in Hu sheep. Scientia Agricultura Sinica, 2010, 43(24): 5129-5136. (in Chinese)

[20]郝称莉, 李齐发, 乔永, 刘振山, 邵丹青, 李伟华, 林建良, 吴福荣, 沈补根, 谢庄. 湖羊肌肉组织H-FABP和PPARγ基因表达水平与肌内脂肪含量的相关研究. 中国农业科学, 2008, 41(11): 3776-3783.

Hao C L, Li Q F, Qiao Y, Liu Z S, Shao D Q, Li W H, Lin J L, Wu F R, Shen B G, Xie Z. Association of the H-FABP and PPARγ   gene expression with intramuscular fat content in Hu sheep muscles. Scientia Agricultura Sinica, 2008, 41(11): 3776-3783. (in Chinese)

[21]乔永, 黄治国, 李齐发, 刘振山, 代蓉, 谢庄, 郝称莉, 刘红林. 绵羊肌肉LPL基因表达的发育性变化及其对肌内脂肪含量的影响. 中国农业科学, 2007, 40(10): 2323-2330.

Qiao Y, Huang Z G, Li Q F, Liu Z S, Dai R, Xie Z, Hao C L, Liu H L. Developmental changes of the LPL mRNA expression and the effect on IMF content in sheep muscle. Scientia Agricultura Sinica, 2007, 40(10): 2323-2330. (in Chinese)

[22]房爱华, 尹彦涛.基因芯片技术的应用现状及展望. 中国畜牧兽医, 2009, 36(5): 75-78.

Fang A H, Yin Y T. Present application situation and prospect of gene chip technology. China Animal Husbandry and Veterinary Medicine, 2009, 36(5): 75-78. (in Chinese)

[23]张冬杰, 刘娣, 别墅, 孙洪涛, 汪亮, 王文涛, 何鑫淼. 利用Affymetrix芯片分析民猪冷应激后肌肉组织的基因表达谱. 畜牧兽医学报, 2011, 42(12): 1661-1665.

Zhang D J, Liu D, Bie S, Sun H T, Wang L, Wang W T, He X M. Gene expression analysis upon cold induced by Affymetrix pig chip. Acta Veterinaria et Zootechnica Sinica, 2011, 42(12): 1661-1665. (in Chinese)

[24]王洪宝, 王启贵, 李辉. 利用基因芯片技术研究两品种鸡脂肪组织差异表达基因. 生物工程学报, 2005, 21(6): 979-982.

Wang H B, Wang Q G, Li H. cDNA microarray on differentially expressed genes of adipose tissue in two breeds chicken. Chinese Journal of Biotechnology, 2005, 21(6): 979-982. (in Chinese)

[25]冯政, 刘贵生, 武华玉, 黄京书, 梅书棋. 应用基因芯片技术筛选猪抗病相关基因. 第十二次全国畜禽遗传标记研讨会论文集, 2010.

Feng Z, Liu G S, Wu H Y, Huang J S, Mei S Q. Genome array on screening the related genes on pig disease resistance genes. The Twelfth National Livestock and Poultry Genetic Markers Symposium, 2010. (in Chinese)

[26]李明洲, 李学伟, 朱砺, 姜延志, 唐国庆. 利用功能分类基因芯片研究不同品种猪脂肪中特定基因的发育性变化. 生物工程学报, 2008, 24(4): 665-672.

Li M Z, Li X W, Zhu L, Jiang Y Z, Tang G Q. Development expression changes of specific genes in adipose tissue for different pig breeds by using pathway-focused microarry. Chinese Journal of Biotechnology, 2008, 24(4): 665-672. (in Chinese)

[27]杨华, 杨永林, 王宁, 李辉, 沈敏. 应用mRNA 差异显示技术筛选绵羊皮肤毛囊差异表达序列标签. 中国草食动物, 2011, 31(2): 9-12.

Yang H, Yang Y L, Wang N, Li H, Shen M. Study on ESTs differential expression in skin and hair follicle of sheep by DD-PCR. China Herbivores, 2011, 31(2): 9-12. (in Chinese)

[28]郝晓燕, 郝庆欢, 刘丹丹, 范瑞文, 曹靖, 朱芷葳, 董彦君, 邢海权. 青年羊驼耳部和背部皮肤组织中miRNA差异表达研究. 中国生物化学与分子生物学报, 2010, 26(11): 1016-1022.

Hao X Y, Hao Q H, Liu D D, Fan R W, Cao J, Zhu Z W, Dong Y J, Xin H Q. Difference of MicroRNA expression in the ear and back skin of young alpaca (Lama acos). Chinese Journal of Biochemistry and Molecular Biology, 2010, 26(11): 1016-1022. (in Chinese)

[29]朱芷葳, 贺俊平, 程志学, 王海东, 李鹏飞, 乔德瑞, 董常生. microRNAs在成年羊驼皮肤组织中的表达. 畜牧兽医学报, 2010, 41(10): 1342-1345.

Zhu Z W, He J P, Cheng Z X, Wang H D, Li P F, Qiao D R, Dong C S. MicroRNAs expression in adult alpaca skin. Acta Veterinaria et Zootechnica Sinica, 2010, 41(10): 1342-1345. (in Chinese)

[30]Smiley A K, Klingenberg J M, Aronow B J, Boyce S T, Kitzmiller W, Supp D M. Microarray analysis of gene expression in cultured skin substitutes compared with native human skin. The Society for Investigative Dermatology, 2005, 125: 1286-1301.

[31]Oshinmori N, Fuchs E. Paracrine TGF-β signaling counterbalances BMP-mediated repression in hair follicle stem cell activation. Cell Stem Cell, 2012, 10(1): 63-75.

[32]Botchkarev V A, Sharov A A. BMP signaling in the control of skin development and hair follicle growth. Differentitation, 2004, 72(9): 512-526.

[33]Kazuhiro S, Javed M. Gene ontology annotation as text categorization: an empirical study. Information Processing and Management, 2008, 44: 1754-1770.

[34]Yan G E, Zhang J H. Progress on bone morphogenetic proteins on animal reproduction. China Academic Journal Electronic Press, 2006, 27(6): 33-37.

[35]Srernlicht M D, Werb Z. How matrix metallo-proteinases regulate cell behavior. Annual Review of Cell and Developmental Biology, 2001, 17: 463-516.

[36]于立娜. 转录因子SNAI1基因沉默对乳腺癌细胞MCF-7生物学表型的影响[D]. 长春: 吉林大学, 2010: 2-3.

Yu L N. The effect of shRNA mediated gene silencing of transcription factor SNAI1 on biological phenotypes in breast cancer cell line MCF-7[D]. Changchun: Jilin University, 2010: 2-3. (in Chinese)

[37]曾俊杰, 孙凯, 吴承堂, 雷尚通, 王伟. 结直肠癌与毗邻矮胖组织中microRNA-221与CDKNIC/P57的差异表达. 中华实验外科杂志, 2011, 28(1): 19-20.

Zeng J J, Sun K, Wu C T, Lei S T, Wang W. Differential expression of microRNA-221 and CDKNIC/P57 in colorectal carcinoma and adjacent non-tumorous tissues.Chinese Journal of Experimental Surgery, 2011, 28(1): 19-20. (in Chinese)

[38]苗毅, 李保庆, 刘晖, 马玉泉, 贾涛, 田子强. 食管鳞细胞株金属硫蛋白3基因CpG岛超甲基化的临床意义. 山东医药, 2008, 48(38): 17-19.

Miao Y, Li B Q, Li H, Ma Y Q, Jia T, Tian Z Q. Significance of CpG island hypermethylation of MT-3 gene in esophageal squamous cell carcinoma. Shangdong Medical Journal, 2008, 48(38): 17-19. (in Chinese)

[39]罗卫星, 蔡惠芬, 王兴群, 刘若余. 山羊垂体转录因子POU1F1  基因多态性及其与屠宰性状相关性研究. 遗传育种, 2011, 47(9): 5-6.

Luo W X, Cai H F, Wang X Q, Liu R Y. The correlation study on polymorphism of goats pituitary transcription factor POU1F1 gene and the slaughter character. Genetics and Breeding, 2011, 47(9): 5-6. (in Chinese)
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