Scientia Agricultura Sinica ›› 2016, Vol. 49 ›› Issue (7): 1346-1359.doi: 10.3864/j.issn.0578-1752.2016.07.011
• HORTICULTURE • Previous Articles Next Articles
SUN Li1, DING Yu-duan1, HE Yi-zhong1, CHEN Ling-ling2, CHENG Yun-jiang1
[1] Aronson J K. Biomarkers and surrogate endpoints. British Journal of Clinical Pharmacology, 2005, 59:491-494.
[2] Strimbu K, Tavel J A. What are biomarkers? Current Opinion in HIV and AIDS, 2010, 5:463-466.
[3] Marcondes-Braga F G, Gutz I G, Batista G L, Saldiva P H, Ayub-Ferreira S M, Issa VS, Mangini S, Bocchi E A, Bacal F. Exhaled acetone as a new biomaker of heart failure severity. Chest, 2012, 142:457-466.
[4] Stien X, Percic P, Gnassia-Barelli M, Romlo M, Lafaurie M. Evaluation of biomarkers in caged fishes and mussels to assess the quality of waters in a bay of the NW Mediterranean Sea. Environment Pollution, 1998, 99(3): 339-345.
[5] Agudelo-Romero P, Erban A, Sousa L, Pais MS, Kopka J, Fortes A M. Search for transcriptional and metabolic markers of grape pre-ripening and ripening and insights into specific aroma development in three Portuguese cultivars. Plos One, 2013, 8:e60422.
[6] Zhang J, Wang X, Yu O, Tang J, Gu X, Wan X, Fang C. Metabolic profiling of strawberry (Fragaria×ananassa Duch.) during fruit development and maturation. Journal of Experimental Botany, 2011, 62:1103-1118.
[7] Shaik R, Ramakrishna W. Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice. Plant Physiology, 2014, 164: 481-495.
[8] Klie S, Osorio S, Tohge T, Drincovich M F, Fait A, Giovannoni J J, Fernie A R, Nikoloski Z. Conserved changes in the dynamics of metabolic processes during fruit development and ripening across species. Plant Physiology, 2013, 164:55-68.
[9] Cheng H, Chen J, Li X, Pan J, Xue S J, Liu D, Ye X. Differentiation of the volatile profiles of Chinese bayberry cultivars during storage by HS-SPME–GC/MS combined with principal component analysis. Postharvest Biology and Technology, 2014, 100:59-72.
[10] Cercos M, Soler G, Iglesias D J, Gadea J, Forment J, Talon M. Global analysis of gene expression during development and ripening of citrus fruit flesh. A proposed mechanism for citric acid utilization. Plant Molecular Biology, 2006, 62:513-527.
[11] Degu A, Hatew B, Nunes-Nesi A, Shlizerman L, Zur N, Katz E, Fernie A R, Blumwald E, Sadka A. Inhibition of aconitase in citrus fruit callus results in a metabolic shift towards amino acid biosynthesis. Planta, 2011, 234:501-513.
[12] Ding Y, Chang J, Ma Q, Chen L, Liu S, Jin S, Han J, Xu R, Zhu A, Guo J, Luo Y, Xu J, Xu Q, Zeng Y, Deng X, Cheng Y. Network analysis of postharvest senescence process in citrus fruits revealed by transcriptomic and metabolomic profiling. Plant Physiology, 2015, 168:357-376.
[13] Sun X, Zhu A, Liu S, Sheng L, Ma Q, Zhang L, Nishawy E M, Zeng Y, Xu J, Ma Z, Cheng Y, Deng X. Integration of metabolomics and subcellular organelle expression microarray to increase understanding the organic acid changes in post-harvest citrus fruit. Journal of Integrative Plant Biology, 2013, 55:1038-1053.
[14] Sun X H, Xiong J J, Zhu A D, Zhang L, Ma Q L, Xu J, Cheng Y J, Deng X X. Sugars and organic acids changes in pericarp and endocarp tissues of pumelo fruit during postharvest storage. Scientia Horticulturae, 2012, 142:112-117.
[15] Ma Q, Ding Y, Chang J, Sun X, Zhang L, Wei Q, Cheng Y, Chen L, Xu J, Deng X. Comprehensive insights on how 2,4- dichlorophenoxyacetic acid retards senescence in post-harvest citrus fruits using transcriptomic and proteomic approaches. Journal of Experimental Botany, 2014, 65:61-74.
[16] Yun Z, Gao H J, Liu P, Liu S Z, Luo T, Jin S, Xu Q, Xu J, Cheng Y J, Deng X X. Comparative proteomic and metabolomic profiling of citrus fruit with enhancement of disease resistance by postharvest heat treatment. BMC Plant Biology, 2013, 13:1-16.
[17] Gil Chu, Jun Li, Balasubramanian N, Robert T, Virginia T. Significance analysis of microarrays. Users Guide and Technical Document, 2001.
[18] Xu Z, Wang Y, Fan G. A two-stage quality control method for 2-m temperature observations using biweight means and a progressive EOF analysis. Monthly Weather Review, 2012, 141:798-808.
[19] Dejean S, Gonzalez I, Le Cao K A. Package ‘mixOmics’, 2011.
[20] Student S, Fujarewicz K. Stable feature selection and classification algorithms formulticlass microarray data. Biology Direct, 2012, 33(7):1-20.
[21] Yu K, Xu Q, Da X, Guo F, Ding Y, Deng X. Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis). BMC Genomics, 2012, 13:10.
[22] Chang C C, Lin C J. LIBSVM: a library for support vector machines. ACM Transactions on Intelligent Systems and Technology (TIST), 2011, 2:27.
[23] Löw P, Bussell K, Dawson S P, Billett M A, Mayer R J, Reynolds S E. Expression of a 26S proteasome ATPase subunit, MS73, in muscles that undergo developmentally programmed cell death, and its control by ecdysteroid hormones in the insect Manduca sexta. Federation of European Biochemical Societies, 1997, 18019: 345-349.
[24] Schirra A. Long-term frozen storage impact on the antioxidant capacity and chemical composition of sardinian myrtle (Myrtus communis L.) berries. Journal of Agricultural Science and Technology, 2011, 1:1168-1175.
[25] Miflin B J. Amino Acids and Derivatives: The Biochemistry of Plants. Elsevier, 2014.
[26] 熊晶晶. 柑橘果实采后有机酸代谢研究[D].武汉: 华中农业大学. 2007.
Xiong J J. Studies on the metabolism of fruit organie acids in posthsrvest citrus [D]. Wuhan: Huazhong Agriculture University. 2007. (in Chinese)
[27] Dixon D P, Skipsey M, Edwards R. Roles for glutathione transferases in plant secondary metabolism. Phytochemistry, 2010, 71:338-350.
[28] Öztetik E A. Tale of plant glutathione S-Transferases: Since 1970. The Botanical Review, 2008, 74:419-437.
[29] Klee H J. Improving the flavor of fresh fruits: genomics, biochemistry, and biotechnology. New Phytologist, 2010, 187:44-56.
[30] James C R, Quinn J E, Mullan P B, Johnston P G, Harkin D P. BRCA1, a potential predictive biomarker in the treatment of breast cancer. Oncologist, 2007, 12:142-150. |
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