|
Aloni
R, Aloni E, Langhans M, Ullrich C I. 2006. Role of auxin in regulating
arabidopsis flower development. Planta, 223, 315–328.
Blümmel
M, Grings E, Erenstein O. 2013. Potential for dual-purpose maize varieties to
meet changing maize demands: Synthesis. Field Crops Research, 153, 107–112.
Bu
D C, Luo H T, Huo P P, Wang Z H, Zhang S, He Z H, Wu Y, Zhao L H, Liu J J, Guo
J C, Fang S, Cao W C, Yi L, Zhao Y, Kong L. 2021. Kobas-i: intelligent
prioritization and exploratory visualization of biological functions for gene
enrichment analysis. Nucleic Acids Research, 49,
W317–W325.
Cao
J, Li G, Qu D, Li X, Wang Y. 2020. Into the seed: Auxin controls seed
development and grain yield. International Journal of Molecular Sciences, 21, 1662.
Chung
H S, Howe G A. 2009. A critical role for the tify motif in repression of
jasmonate signaling by a stabilized splice variant of the jasmonate ZIM-domain
protein jaz10 in arabidopsis. Plant Cell, 21, 131–145.
Churchill
G A, Doerge R W. 1994. Empirical threshold values for quantitative trait
mapping. Genetics, 138, 963–971.
Cook
J P, Mcmullen M D, Holland J B, Tian F, Bradbury P, Ross-Ibarra J, Buckler E S,
Flint-Garcia S A. 2012. Genetic architecture of maize kernel composition in the
nested association mapping and inbred association panels. Plant Physiology, 158, 824–834.
Dong
Y, Zhang Z, Shi Q, Wang Q, Zhou Q, Li Y. 2015. Qtl identification and
meta-analysis for kernel composition traits across three generations in
popcorn. Euphytica, 204, 649–660.
Dudley
J W. 1974. Seventy generations of selection for oil and protein concentration
in the maize kernel. Maydica, 37, 79–110.
Feng
S G, Yue R Q, Tao S, Yang Y J, Zhang L, Xu M F, Wang H Z, Shen C J. 2015.
Genome-wide identification, expression analysis of auxin-responsive gh3 family genes in maize (Zea mays L.) Under abiotic stresses. Journal of Integrative Plant Biology, 57, 783–795.
Figueiredo
Duarte D, Claudia K. 2018. Auxin: A molecular trigger of seed development. Genes & Development, 32, 479–490.
Garcia
D, Saingery V, Chambrier P, Mayer U, Jurgens G, Berger F. 2003. Arabidopsis haiku mutants reveal new controls of seed size by endosperm. Plant Physiology, 131, 1661–1670.
Guo
Y Q, Yang X H, Subhash C, Yan J B, Zhang J, Song T M, Li J S. 2013.
Identification of unconditional and conditional QTL for oil, protein and starch
content in maize. Crop Journal, 1, 34–42.
Hannah
L C, Boehlein S. 2017. Starch biosynthesis in maize endosperm. Maize Kernel Development. CABI, Boston, MA. pp. 149–159.
Hannah
L C, James M. 2008. The complexities of starch biosynthesis in cereal
endosperms. Current Opinion in Biotechnology, 19,
160–165.
Hu
S T, Wang M, Zhang X, Chen W K, Song X R, Fu X Y, Fang H, Xu J, Xiao Y N, Li Y
R, Bai G H, Li J S, Yang X H. 2021. Genetic basis of kernel starch content
decoded in a maize multi-parent population. Plant Biotechnology Journal, 19, 2192–2205.
Huang
L C, Tan H Y, Zhang C Q, Li Q F, Liu Q. 2021. Starch biosynthesis in cereal
endosperms: An updated review over the last decade. Plant Communications, 2, 5.
Karn
A, Gillman J D, Flint-Garcia S A. 2017. Genetic analysis of teosinte alleles
for kernel composition traits in maize. G3-Genes Genomes Genetics, 7,
1157–1164.
Kazan
K, Manners J M. 2012. Jaz repressors and the orchestration of phytohormone
crosstalk. Trends in Plant Science, 17,
22–31.
Kim
D, Paggi J M, Park C, Bennett C, Salzberg S L. 2019. Graph-based genome
alignment and genotyping with hisat2 and hisat-genotype. Nature Biotechnology, 37, 907.
Lambert
R J, Hallauer A R. 1994. High-oil corn hybrids. Specialty Corns. 2nd
ed. CRC Press, London. pp. 123–145.
Li
H, Yao L, Sun L, Zhu Z. 2021. Correction: Ethylene insensitive 3 suppresses
plant de novo root regeneration from leaf explants and mediates age-regulated
regeneration decline. Development, 9, 148.
Li
H, Ye G, Wang J. 2007. A modified algorithm for the improvement of composite
interval mapping. Genetics, 175, 361–374.
Liu
N, Xue Y D, Guo Z Y, Li W H, Tang J H. 2016. Genome-wide association study
identifies candidate genes for starch content regulation in maize kernels. Frontiers in Plant Science, 7, 1046.
Liu
N, Zhang Z, Xue Y, Meng S, Huang Y, Li W, Huang J, Tang J. 2018. Identification
of quantitative trait loci and candidate genes for maize starch granule size
through association mapping. Scientific Reports, 8, 14236.
Li
X H, Wang G H, Fu J, Li L, Jia G Y, Ren L S, Lubberstedt T, Wang G Y, Wang J H,
Gu R L. 2018. Qtl mapping in three connected populations reveals a set of
consensus genomic regions for low temperature germination ability in Zea
mays L. Frontiers in Plant Science, 9,
65.
Li
Y, Wang Y, Wei M, Li X, Fu J. 2009. QTL identification of grain protein
concentration and its genetic correlation with starch concentration and grain
weight using two populations in maize (Zea mays L.). Journal of Genetics, 88, 61–67.
Liao
Y, Smyth G K, Shi W. 2014. Featurecounts: An efficient general purpose program
for assigning sequence reads to genomic features. Bioinformatics, 30,
923–930.
Lin
F, Zhou L, He B, Zhang X, Dai H, Qian Y, Ruan L, Zhao H. 2019. Qtl mapping for
maize starch content and candidate gene prediction combined with co-expression
network analysis. Theoretical and Applied Genetics, 132, 1931–1941.
Liu
Y, Dong Y, Niu S, Cui D, Wang Y, Wei M, Li X, Fu J, Zhang Z, Chen H. 2008. QTL
identification of kernel composition traits with popcorn using both f2:3 and bc2f2 populations developed from the same cross. Journal of Cereal Science, 48, 625–631.
Locascio
A, Roig-Villanova I, Bernardi J, Varotto S. 2014. Current perspectives on the
hormonal control of seed development in arabidopsis and maize: a focus on auxin. Frontiers in Plant Science, 5, 412.
Luo
J, Zhou J, Zhang J Z. 2018. Aux/iaa gene family in plants: Molecular structure,
regulation, and function. International Journal of Molecular Sciences, 19, 259.
Mccleary
B V, Gibson T S, Solah V, Mugford D C. 1994. Total starch measurement in cereal
products - interlaboratory evaluation of a rapid enzymatic test procedure. Cereal Chemistry, 71, 501–505.
Nakashima
K, Yamaguchi-Shinozaki K. 2013. ABA signaling in stress-response and seed
development. Plant Cell Reports, 32, 959–970.
Null
R, Team R, Null R, Writing T C, Null R, Team R, Null R, Core R, Team R, Team R.
2011. R: A language and environment for statistical computing. Computing, 1, 12–21.
Overvoorde
P, Fukaki H, Beeckman T. 2010. Auxin control of root development. Cold Spring Harbor Perspectives in Biology, 2, a1537.
Pattison
R J, Csukasi F, Catala C. 2014. Mechanisms regulating auxin action during fruit
development. Physiologia Plantarum, 151, 62–72.
Scott
R J, Spielman M, Bailey J, Dickinson H G. 1998. Parent-of-origin effects on
seed development in Arabidopsis thaliana. Development, 125,
3329–3341.
Smit
M E, Weijers D. 2015. The role of auxin signaling in early embryo pattern
formation. Current Opinion in Plant Biology, 28, 99–105.
Staswick
P E, Serban B, Rowe M, Tiryaki I, Maldonado M T, Maldonado M C, Suza W. 2005.
Characterization of an arabidopsis enzyme family that conjugates amino acids to
indole-3-acetic acid. Plant Cell, 17, 616–627.
Sundaresan
V. 2005. Control of seed size in plants. Proceedings of the National Academy of Sciences of the United States of America, 102, 17887–17888.
Tian
T, Liu Y, Yan H Y, You Q, Yi X, Du Z, Xu W Y, Su Z. 2017. Agrigo v2.0: A go
analysis toolkit for the agricultural community, 2017 update. Nucleic Acids Research, 45, W122–W129.
Tu
K L, Cheng Y, Ning C L, Yang C M, Dong X H, Cao H L, Sun Q. 2022.
Non-destructive viability discrimination for individual scutellaria baicalensis
seeds based on high-throughput phenotyping and machine learning. Agriculture, 12, 1616.
Val
L D, Schwartz S H, Kerns M R, Deikman J. 2009. Development of a high oil trait
for maize. Molecular Genetic Approaches to Maize Improvement, 63, 303–323.
Wang
H, Huang Y C, Xiao Q, Huang X, Li C S, Gao X Y, Wang Q, Xiang X L, Zhu Y D,
Wang J C, Wang W Q, Larkins B A, Wu Y R. 2020. Carotenoids modulate kernel
texture in maize by influencing amyloplast envelope integrity. Nature Communications, 11, 1.
Wassom
J, Wong J C, Martinez E, King J, Debaene J, Hotchkiss J R, Mikkilineni V, Bohn
M O, Rocheford T R. 2008. QTL associated with maize kernel oil, protein, and
starch concentrations; kernel mass; and grain yield in illinois high oil×B73
backcross-derived lines. Crop Science, 48, 243–252.
Whitt
S R, Wilson L M, Tenaillon M I, Gaut B S, Edward I V. 2002. Genetic diversity
and selection in the maize starch pathway. Proceedings of the National Academy of Sciences of the United States of America, 99, 12959–12962.
Wobus
U, Weber H. 1999. Sugars as signal molecules in plant seed development. Biological Chemistry, 380, 937–944.
Woodhouse
M R, Sen S, Schott D, Portwood J L, Freeling M, Walley J W, Andorf C M,
Schnable J C. 2022. Qteller: A tool for comparative multi-genomic gene
expression analysis. Bioinformatics, 38, 236–242.
Woodworth
C M, Leng E R, Jugenheimer R W. 1952. 50 generations of selection for protein
and oil in corn. Agronomy Journal, 44, 60–65.
Xiong
J, Zhang W X, Zheng D, Xiong H, Feng X J, Zhang X M, Wang Q J, Wu F K, Xu J, Lu
Y L. 2022. Zmlbd5 increases drought sensitivity by suppressing ros
accumulation in Arabidopsis. Plants-Basel, 11, 10.
Xu
D B, Yang Y, Tao S C, Wang Y L, Yuan H W, Sharma A, Wang X F, Shen C J, Yan D
L, Zheng B S. 2020. Identification and expression analysis of auxin-responsive GH3 family genes in Chinese hickory (Carya cathayensis) during
grafting. Molecular Biology Reports, 47, 4495–4506.
Zhang
H D, Jin T T, Huang Y Q, Chen J T, Zhu L Y, Zhao Y F, Guo J J. 2015.
Identification of quantitative trait loci underlying the protein, oil and
starch contents of maize in multiple environments. Euphytica, 205,
169–183.
Zhang
J J, Hu Y F, Zhou H. 2007. Starch accumulation and activities of key enzymes
involved in starch synthesis in the grains of maize inbred lines with different
starch contents. Journal of Plant Physiology and Molecular Biology, 33, 123.
|
