Albright S R, Tjian R. 2000. TAFs revisited: More data reveal new twists and confirm old ideas. Gene, 242,1-13.

Bartlett A, O’Malley R C, Huang S C, Galli M, Nery J R, Gallavotti A, Ecker J R. 2017. Mapping genome-wide transcription-factor binding sites using DAP-seq. Nature Protocols, 12, 1659-1672.

Bradbury P J, Zhang Z, Kroon D E, Casstevens T M, Ramdoss, Y, Buckler, E S. 2007. TASSEL: Software for association mapping of complex traits in diverse samples. Bioinformatics, 23, 2633-2635.

Chalkley G E, Verrijzer C P. 1999. DNA binding site selection by RNA polymerase II TAFs: A TAF(II)250-TAF(II)150 complex recognizes the initiator. The EMBO Journal, 18, 4835-4485.

Chen G, Wang D, Wu B, Yan F, Xue H, Wang Q, Quan S, Chen Y. 2020. TAF14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation. Nature Communications, 11, 4206.

Chen X, Qi Y, Wu Z, Wang X, Li J, Zhao D, Hou H, Li Y, Yu Z, Liu W, Wang M, Ren Y, Li Z, Yang H, Xu Y. 2021. Structural insights into preinitiation complex assembly on core promoters. Science, 372, eaba8490.

Dharmasiri N, Dharmasiri S, Weijers D, Karunarathna N, Jurgens G, Estelle M. 2007. AXL and AXR1 have redundant functions in RUB conjugation and growth and development in Arabidopsis. The Plant Journal, 52, 114-123.

Du J, Li B, Lu X, Yang X, Guo X, Zhao C. 2022. Quantitative phenotyping and evaluation for lettuce leaves of multiple semantic components. Plant Methods, 18, 54.

Duvick D N, Cassman K G. 1999. Post–green revolution trends in yield potential of temperate maize in the north-central United States. Crop Science, 39, 1622-1629.

Eom H, Park S J, Kim M K, Kim H, Kang H, Lee I. 2018. TAF15b, involved in the autonomous pathway for flowering, represses transcription of FLOWERING LOCUS C. The Plant Journal, 93, 79-91.

Fei J, Lu J, Jiang Q, Liu Z, Yao D, Qu J, Liu S, Guan S, Ma Y. 2022. Maize plant architecture trait QTL mapping and candidate gene identification based on multiple environments and double populations. BMC Plant Biology, 22, 110.

Feng W, Liu Y, Cao Y, Zhao Y, Zhang H, Sun F, Yang Q, Li W, Lu Y, Zhang X, Fu F, Yu H. 2022. Maize ZmBES1/BZR1-3 and-9 transcription factors negatively regulate drought tolerance in transgenic Arabidopsis. International Journal of Molecular Science, 23, 6025.

Feng W, Zhou Y, Duan H, Zhou W, Zhang X, Liu Y, Zhang H, Wei J, Wan T, Liu Y, Xu W, Yang Q, Qu J, Zhang Y, Li W, Lu Y, Fu F, Yu H. 2025. Maize ZmBES1/BZR1-4 recruits ZmTLP5 to regulate drought tolerance and seed development by regulating ZmPum6 and ZmMBP1. The Plant Journal, 122, e70162.

Gao L, Pan L Shi Y, Zeng R, Li M, Li Z, Zhang X, Zhao X, Gong X, Huang W, Yang X, Lai J, Zuo J, Gong Z, Wang X, Jin W, Dong Z, Yang S. 2024. Genetic variation in a heat shock transcription factor modulates cold tolerance in maize. Molecular Plant, 17, 1423-1438.

Guo L, Li J, Qi P, Wang J, Ghanem H, Qing L, Zhang H M. 2024. The TATA-box binding protein-associated factor TAF12b facilitates the degradation of type B response regulators to negatively regulate cytokinin signaling. Plant Communication, 5, 101076.

Jafari F, Wang B, Wang H, Zou J. 2024. Breeding maize of ideal plant architecture for high-density planting tolerance through modulating shade avoidance response and beyond. Journal of Integrative Plant Biology, 66, 849-864.

Jiang L, Jiang N, Hu Z, Sun X, Xiang X, Liu Y, Wu M, Liu C, Luo X. 2023. TATA-box binding protein-associated factor 2 regulates grain size in rice. The Crop Journal, 11, 438–446.

Kim J S, Sakamoto Y, Takahashi F, Shibata M, Urano K, Matsunaga S, Yamaguchi-Shinozaki K, Shinozaki K. 2022. Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity. Proceedings of the National Academy of Sciences of the United States of America, 119, e2120219119.

Lago C, Clerici E, Dreni L, Horlow C, Caporali E, Colombo L, Kater M M. 2005. The Arabidopsis TFIID factor AtTAF6 controls pollen tube growth. Development Biology, 285, 91-100.

Lawrence E J, Gao H, Tock A J, Lambing C, Blackwell A R, Feng X, Henderson I R. 2019. Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis. Current Biology, 29, 2676-2686.

Li H, Wang L, Liu M, Dong Z, Li Q, Fei S, Xiang H, Liu B, Jin W. 2020. Maize plant architecture is regulated by the ethylene biosynthetic gene ZmACS7. Plant Physiology, 183, 1184-1199.

Liao S, Yan J, Xing H, Tu Y, Zhao H, Wang G. 2021. Genetic basis of vascular bundle variations in rice revealed by genome-wide association study. Plant Science, 302, 110715.

Lindner M, Simonini S, Kooiker M, Gagliardini V, Somssich M, Hohenstatt M, Simon R, Grossniklaus U, Kater M M. 2013. TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. Development Biology, 379, 28-37.

Liu G, Yang H, Xie R, Yang Y, Liu W, Guo X, Xue J, Ming B, Wang K, Hou P, Li S. 2021. Genetic gains in maize yield and related traits for high-yielding cultivars released during 1980s to 2010s in China. Field Crop Research, 270, 108223.

Makarevitch I, Thompson A, Muehlbauer G J, Springer N M. 2012. Brd1 gene in maize encodes a brassinosteroid C-6 oxidase. PLoS ONE, 7, e30798.

Malkowska M, Kokoszynska K, Rychlewski L, Wyrwicz L. 2013. Structural bioinformatics of the general transcription factor TFIID. Biochimie, 95, 680-691.

Martinez-Garcia M, Fernández-Jiménez N, Santos J L, Pradillo M. 2020. Duplication and divergence: New insights into AXR1 and AXL functions in DNA repair and meiosis. Scientific Reports, 10, 8860.

Matsui T, Segall J, Weil P A, Roeder R G. 1980. Multiple factors required for accurate initiation of transcription by purified RNA polymerase II. Journal of Biological Chemistry, 255, 11992-11996.

Moreno M A, Harper L C, Krueger R W, Dellaporta S L, Freeling M. 1997. liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis. Genes & Development, 11, 616-628.

Ning L, Wang J, Shi P, Wu C, Dong Z, Zhao H. 2019. Mapping genome-wide binding sites of endosperm specific expression transcription factor O2 using DAP-seq. Chinese Science Bulletin, 64, 2537-2548.

Peiffer J A, Romay M C, Gore M A, Flint-Garcia S A, Zhang Z, Millard M J, Gardner C A, McMullen M D, Holland J B, Bradbury P J, Buckler E S. 2014. The genetic architecture of maize height. Genetics, 196, 1337-1356.

Perez D E, Hoyer J S, Johnson A I, Moody Z R, Lopez J, Kaplinsky N J. 2009. BOB1BER1 is a noncanonical Arabidopsis small heat shock protein required for both development and thermotolerance. Plant Physiology, 151, 241-252.

Sack L, Scoffoni C. 2013. Leaf venation: Structure, function, development, evolution, ecology and applications in the past, present and future. New Phytologist, 198, 983-1000.

Sheng H, Zhang H, Deng H, Zhang Z, Qiu F, Yang F. 2025. Maize COMPACT PLANT 3 regulates plant architecture and facilitates high-density planting. The Plant Cell, 37, koaf029.

Shi Q, Xia Y, Wang Q, Lv K, Yang H, Cui L, Sun Y, Wang X, Tao Q, Song X, Xu D, Xu W, Wang X, Wang X, Kong F, Zhang H, Li B, Li P, Wang H, Li G. 2024. Phytochrome B interacts with LIGULELESS1 to control plant architecture and density tolerance in maize. Molecular Plant, 17, 1255-1271.

Silverblatt-Buser E W, Frick M A, Rabeler C, Kaplinsky N J. 2018. Genetic interactions between BOB1 and multiple 26S proteasome subunits suggest a role for proteostasis in regulating Arabidopsis development. G3 Genes Genomes Genetics, 8, 1379-1390.

Sun G, Yu H, Wang P, Lopez-Guerrero M, Mural R V, Mizero O N, Grzybowski M, Song B, Van Dijk K, Schachtman D P, Zhang C, Schnable J C. 2023. A role for heritable transcriptomic variation in maize adaptation to temperate environments. Genome Biology, 24, 55.  

Sun X, Xiang Y, Dou N, Zhang H, Pei S, Franco A V, Menon M, Monier B, Ferebee T, Liu T, Liu S, Gao Y, Wang J, Terzaghi W, Yan J, Hearne S, Li L, Li F, Dai M. 2023 The role of transposon inverted repeats in balancing drought tolerance and yield-related traits in maize. Nature Biotechnology, 41, 120-127.

Tian J, Wang C, Chen F, Qin W, Yang H, Zhao S, Xia J, Du X, Zhu Y, Wu L, Cao Y, Li H, Zhuang J, Chen S, Zhang H, Chen Q, Zhang M, Deng X W, Deng D, Li J, Tian F. 2024. Maize smart-canopy architecture enhances yield at high densities. Nature, 632, 576-584.

Tian J, Wang C, Xia J, Wu L, Xu G, Wu W, Li D, Qin W, Han X, Chen Q, Jin W, Tian F. 2019. Teosinte ligule allele narrows plant architecture and enhances high-density maize yields. Science, 365, 658-664.

Thomas M C, Chiang C M. 2006. The general transcription machinery and general cofactors. Critical Reviews in Biochemistry and Molecular Biology, 41, 105-178.

Waterworth W M, Drury G E, Blundell-Hunter G, West C E. 2015. Arabidopsis TAF1 is an MRE11-interacting protein required for resistance to genotoxic stress and viability of the male gametophyte. The Plant Journal, 84, 545-557.

Xu X, Hu Q, Wang J, Wang X, Lou L, Xu J, Yang X, Chen X. 2023. A 2-bp deletion in the protein kinase domain region of the ERECTA-like receptor kinase gene in cucumber results in short internode phenotype. Plant Science, 327, 111536.

Yan Y, Duan F, Li X, Zhao R, Hou P, Zhao M, Li S, Wang Y, Dai T, Zhou W. 2024. Photosynthetic capacity and assimilate transport of the lower canopy influence maize yield under high planting density. Plant Physiology, 195, 2652-2667.

Yan Y, Hou P, Duan F, Niu L, Dai T, Wang K, Zhao M, Li S, Zhou W. 2021. Improving photosynthesis to increase grain yield potential: An analysis of maize hybrids released in different years in China. Photosynthesis Research, 150, 295-311.

Yang N, Lu Y, Yang X, Huang J, Zhou Y, Ali F, Wen W, Liu J, Li J, Yan J. 2014. Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. Plos Genetics, 10, e1004573.

You J, Xiao W, Zhou Y, Shen W, Ye L, Yu P, Yu G, Duan Q, Zhang X, He Z, Xiang Y, Sang X, Li Y, Zhao, F, Ling Y, He G, Zhang T. 2022. The APC/CTAD1-WIDE LEAF 1-NA222RROW LEAF 1 pathway controls leaf width in rice. The Plant Cell, 34, 4313-4328.