Scientia Agricultura Sinica ›› 2013, Vol. 46 ›› Issue (5): 943-949.doi: 10.3864/j.issn.0578-1752.2013.05.009

• PLANT PROTECTION • Previous Articles     Next Articles

SCAR Molecular Markers Correlated with Populations of Meloidogyne incognita Virulent to Resistance Gene Me3

 WANG  Gang, LI  二Feng, MAO  Zhen-Chuan, XIE  Bing-Yan, FENG  Dong-Xin   

  1. Key Laboratory of Horticultural Crops Biology and Genetic Improvement, Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081
  • Received:2012-09-10 Online:2013-03-01 Published:2012-12-21

Abstract: 【Objective】Molecular markers of virulent populations against Me3 in Meloidogyne incognita was studied in order to detect the virulence mutation rapidly and effectively. 【Method】Root-knot nematode populations including avirulent population, populations overcoming resistant gene Me3 and the mixed group of the two population were used as experiment materials, polymerase chain reaction was done with 100 primer pairs designed according to M. incognita genome and 19 pairs reported in literature to screen specific band among three populations. And subsequently SCAR primers were designed and a multiplex PCR reaction system was built. 【Result】Seven primer pairs amplifying stability bands were screened, two of which were converted into SCAR markers differentiating the three populations. Multiplex PCR from avirulent population and Me3-virulent isolates generated a fragment of 999 and 629 bp, respectively, while from the mixed group generated both of the above fragments. 【Conclusion】Virulent mutation markers were successfully developed in M. incognita, and one-step multiplex PCR can be used for identification of Me3-virulence.

Key words: Meloidogyne incognita , molecular marker , SCAR , virulence mutation

[1]Trudgill D L, Blok V C. Apomictic, polyphagous root-knot nematodes: Exceptionally successful and damaging biotrophic root pathogens. Annual Reviews of Phytopathology, 2001, 39: 53-77.

[2]雷敬超, 黄慧琴. 南方根结线虫生物防治研究进展. 中国生物防治, 2007, 23(增刊): 76-81.

Lei J C, Huang H Q. Research advance on biological control of the Meloidogyne incognita. Chinese Journal of Biological Control, 2007, 23(Suppl.): 76-81. (in Chinese)

[3]赵鸿, 彭德良, 朱建兰. 根结线虫的研究现状. 植物保护, 2003, 29(6): 6-10.

Zhao H, Peng D L, Zhu J L. Reviews on the root-knot nematodes. Plant Protection, 2003, 29(6): 6-10. (in Chinese)

[4]Castagnone-Sereno P, Bongiovanni M, Palloix A, Dalmasso A. Selection for Meloidogyne incognita virulence against resistance genes from tomato and pepper and specificity of the virulence/resistance determinants. European Journal of Plant Pathology, 1996, 102: 585-590.

[5]Huang X, McGiffen M, Kaloshian I. Reproduction of Mi-virulent Meloidogyne incognita isolates on Lycopersicon spp. Journal of Nematology, 2004, 36(1): 69-75.

[6]Bleve-Zacheo T, Bongiovanni M, Melillo M T, Castagnone-Sereno P. The pepper resistance genes Me1 and Me3 induce differential penetration rates and temporal sequences of root cell ultrastructural changes upon nematode infection. Plant Science, 1998, 133: 79-90.

[7]Djian-Caporalino C, Fazari A, Arguel M J, Vernie T , Casteele C V, Faure I, Brunoud G, Pijarowski L, Palloix A, Lefebvre V, Abad P. Root-knot nematode (Meloidogyne spp.) Me resistance genes in pepper (Capsicum annuum L.) are clustered on the P9 chromosome. Theoretical and Applied Genetics, 2007, 114(3): 473-486.

[8]Bost S C, Triantaphyllou A C. Genetic basis of the epidemiologic effects of resistance to Meloidogyne incognita in the tomato cultivar Small Fry. Journal of Nematology, 1982, 14(4): 540-544.

[9]Ornat C, Verdejo-Lucas S, Sorribas F J. A Population of Meloidogyne javanica in Spain virulent to the Mi resistance gene in tomato. Plant Disease, 2001, 85(3): 271-276.

[10]Viglierchio D R. Resistant host responses to ten California populations of Meloidogyne incognita. Journal of Nematology, 1978, 10: 224-227.

[11]Kaloshian I, Williamson V M, Miyao G, Lawn D A, Westerdahl B B. Resistance-breaking nematodes identified in California tomatoes. California Agriculture, 1996, 50(6): 18-19.

[12]蒋丽芬, 茆振川, 陈国华, 杨宇红, 谢丙炎. 南方根结线虫辣椒Me3 毒性群体适合度代价及专化性分析. 园艺学报, 2011, 38(3): 479-486.

Jiang L F, Mao Z C, Chen G H, Yang Y H, Xie B Y. Fitness cost and specialization of pepper Me3 virulent population in the parthenogenetic nematode Meloidogyne incognita. Acta Horticulturae Sinica, 2011, 38(3): 479-486. (in Chinese)

[13]Lushai G, Loxdale H D, Allen J A. The dynamic clonal genome and its adaptative potential. Biological Journal of the Linnean Society, 2003, 79: 193-208.

[14]Castagnone-Sereno P. Genetic variability and adaptive evolution in parthenogenetic root-knot nematodes. Heredity, 2006, 96: 282-289.

[15]Castagnone-Sereno P, Bongiovanni M, Wajnberg E. Selection and parasite evolution: A reproductive fitness cost associated with virulence in the parthenogenetic nematode Meloidogyne incognita. Evolutionary Ecology, 2007, 21: 259-270.

[16]Puterka G J, Black Iv W C, Steiner W M, Burton R L. Genetic variation and phylogenetic relationships among worldwide collections of the Russian wheat aphid, Diuraphis noxia (Mordvilko), inferred from allozyme and RAPD-PCR markers. Heredity, 1993, 70: 604-618.

[17]Kelkar Y D, Strubczewski N, Hile S E, Chiaromonte F, Eckert K A, Makova K D. What is a microsatellite: A computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC Repeats. Genome Biology and Evolution, 2011, 2: 620-635.

[18]Soubabere O, Jorge V, Notteghem J L, Lebrun M H, Tharreau D. Sequence characerized amplified region markers for the rice blast fungus, Magnaporthe grisea. Molecular Ecology Notes, 2001, 1: 19-21.

[19]Xu M L, Korban S S. AFLP-derived SCARs facilitate construction of a 1.1 Mb sequence-ready map of a region that spans the Vf locus in the apple genome. Plant Molecular Biology, 2002, 50: 803-818.

[20]Niroshini E, Everard J M D T, Karunanayake E H K, Tirimanne T L S. Detection of sequence characterized amplified region (SCAR) markers linked to sex expression in Carica papaya L. Journal of the National Science Foundation of Sri Lanka, 2008, 36(2): 145-150.

[21]Xu J H, Liu P L, Meng Q P, Long H. Characterisation of Meloidogyne species from China using isozyme phenotypes and amplified mitochondrial DNA restriction fragment length polymorphism. European Journal of Plant Pathology, 2004, 110: 309-315.

[22]Meng Q P, Long H, Xu J H. PCR assays for rapid and sensitive identification of three major root-knot nematodes, Meloidogyne incognita, M. Javanica and M. Arenaria. Acta Phytopahologica Sinica, 2004, 34(3): 204-210.

[23]Cenis J L. Identification of four major Meloidogyne spp. by random amplified polymorphic DNA (RAPC-PCR). Phytopathology, 1993, 83: 76-78.

[24]Castagnone-Sereno P, Danchin E G J, Deleury E, Guillemaud T, Malausa T, Abad P. Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita. BMC Genomics, 2010, 11(1): 598.

[25]Jung J, Han H, Ryu S H, Kim W. Microsatellite variation in the pinewood nematode, Bursaphelenchus xylophilus (Steiner and Buhrer) Nickle in South Korea. Genes & Genomics, 2010, 32(2): 151-158.

[26]Villate L, Esmenjaud D, Coedel S, Plantard O. Development of nine polymorphic microsatellite markers for the phytoparasitic nematode Xiphinema index, the vector of the grapevine fanleaf virus. Molecular Ecology Resources, 2009, 9(1): 229-232.

[27]Mulet K, Fargette M, Richaud M, Genson G, Castagnone-Sereno P. Isolation of microsatellites from an enriched genomic library of the plant-parasitic nematode Meloidogyne incognita and their detection in other root-knot nematode species. European Journal of Plant Pathology, 2010, 129(4): 501-505.
[1] WU YuanYuan, LÜ ShuWen, ZHANG ZiJun, WANG Tao, ZHANG YiMing, BU LingChao, ZOU QingDao, JIANG Jing. Mixed Major Gene+Polygene Genetic Analysis of Blossom-End Scar Size in Tomato Fruit [J]. Scientia Agricultura Sinica, 2026, 59(5): 1060-1069.
[2] LÜ Tao, SUN GuoQing, GUO DongCai, CHEN QuanJia, CAI YongSheng, FAN BiaoXing, QU YanYing, ZHENG Kai. Development and Effectiveness Evaluation of InDel Molecular Markers Closely Linked to Fiber Strength QTL in Gossypium barbadense [J]. Scientia Agricultura Sinica, 2025, 58(9): 1684-1701.
[3] JIA YuJing, LI ChaoNan, PAN ZhiXiong, YANG DeLong, MAO XinGuo, JING RuiLian. Cloning and Genetic Effect Analysis of TaTIFY11c-4A in Wheat [J]. Scientia Agricultura Sinica, 2025, 58(17): 3357-3371.
[4] HUANG LiQiang, JIANG Ru, ZHU BoZhi, PENG Huan, XU Chong, SONG JiaXiong, CHEN Min, LI YongQing, HUANG WenKun, PENG DeLiang. Identification and Evaluation of Major Potato Cultivars Resistance to Globodera rostochiensis and Detection of Their H1 Resistance Gene Marker [J]. Scientia Agricultura Sinica, 2024, 57(8): 1506-1516.
[5] WU ChuanLei, HU XiaoYu, WANG Wei, MIAO Long, BAI PengYu, WANG GuoJi, LI Na, SHU Kuo, QIU LiJuan, WANG XiaoBo. Development and Identification of Molecular Markers for Oil-Related Functional Genes and Polymerization Analysis of Excellent Alleles in Soybean [J]. Scientia Agricultura Sinica, 2024, 57(22): 4402-4415.
[6] CHEN WenJie, CHEN Yuan, WEI QingYuan, TANG FuYue, GUO XiaoHong, CHEN ShuFang, QIN XiaYan, WEI RongChang, LIANG Jiang. Identification of Candidate Genes Controlling SSCLD by Utilizing High-Generation Segregating Populations RNA-seq [J]. Scientia Agricultura Sinica, 2024, 57(15): 2914-2930.
[7] LING WenZheng, CAO HaiChao, YU JiaMin, ZONG Hao, WANG Kai, FENG Chao, CHEN Dan. Preparation of Fluopyram-Loaded Nanofiber Nematicide and Its Biological Activity Against Meloidogyne incognita [J]. Scientia Agricultura Sinica, 2024, 57(15): 2997-3009.
[8] GAO Fu, WANG Rui, LIU DongJun, SUN HuiYan, WANG ZiYe, SONG WeiFu, LI TianYa. Stem Rust Resistance Genes Identification and Evaluation of 88 Wheat Cultivars (Lines) in Heilongjiang Province [J]. Scientia Agricultura Sinica, 2024, 57(13): 2568-2582.
[9] CAO WeiPing, FENG Shuo, CHENG JiaXu, CHEN Dan, WU QingJun, SONG Jian. Species Identification of Beauveria brongniartii Strain JG-17 and Virulence Against Three Scarabaeoidae Pests [J]. Scientia Agricultura Sinica, 2024, 57(12): 2364-2377.
[10] LIU Hua, ZENG FanPei, WANG Qian, CHEN GuoQuan, MIAO LiJuan, QIN Li, HAN SuoYi, DONG WenZhao, DU Pei, ZHANG XinYou. Development and Identification of an Interspecific Hexaploid Hybrid Between an A. hypogaea Cultivar and a Wild Species Arachis sp. 30119 in Peanut [J]. Scientia Agricultura Sinica, 2024, 57(10): 1870-1881.
[11] ZHOU JingWei, YE BoWei, ZHANG PengFei, ZHANG YuQing, HAO Min, YIN YuRuo, YUAN Chan, LI ZhiKang, LI ShunDa, XIA XianChun, HE ZhongHu, ZHANG HongJun, LAN CaiXia. Identification and Evaluation of Stripe Rust Resistance in 153 Wheat Collections [J]. Scientia Agricultura Sinica, 2024, 57(1): 18-33.
[12] BAI Bin, ZHANG HuaiZhi, DU JiuYuan, ZHANG XiaoYang, HE Rui, WU Ling, ZHANG Zhe, ZHANG YaoHui, CAO ShiQin, LIU ZhiYong. Current Situation and Strategy of Stripe Rust Resistance Genes Untilization in Winter Wheat Cultivars of Northwestern Oversummering Region for Puccinia striiformis f. sp. tritici in China [J]. Scientia Agricultura Sinica, 2024, 57(1): 4-17.
[13] ZANG XinShan, WANG KangWen, ZHANG XianLiang, WANG XuePing, WANG Jun, LIANG Yu, PEI XiaoYu, REN Xiang, LÜ YuLong, GAO Yu, WANG XingXing, PENG YunLing, MA XiongFeng. Research Advances of Map-Based Cloning Genes in Cotton [J]. Scientia Agricultura Sinica, 2023, 56(23): 4635-4647.
[14] ZHANG ZeYuan, LI Yue, ZHAO WenSha, GU JingJing, ZHANG AoYan, ZHANG HaiLong, SONG PengBo, WU JianHui, ZHANG ChuanLiang, SONG QuanHao, JIAN JunTao, SUN DaoJie, WANG XingRong. QTL Mapping and Molecular Marker Development of Traits Related to Grain Weight in Wheat [J]. Scientia Agricultura Sinica, 2023, 56(21): 4137-4149.
[15] YANG Hao, HUANG YanYan, YI ChunLin, SHI Jun, TAN ChuTian, REN WenRui, WANG WenMing. Development and Application of Specific Molecular Markers for Six Homologous Rice Blast Resistance Genes in Pi9 Locus of Rice [J]. Scientia Agricultura Sinica, 2023, 56(21): 4219-4233.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!