|
Altschul S F, Gish W, Miller W, Myers E W, Lipman D J. 1990. Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
Asada K. 2006. Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiology, 141, 391-396
Bailey T L, Boden M, Buske F A, Frith M, Grant C E, Clementi L, Ren J, Li W W, Noble W S. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research, 37, W202-208.
Bhaskara G B, Wong M M, Verslues P E. 2019. The flip side of phospho-signalling: Regulation of protein dephosphorylation and the protein phosphatase 2Cs. Plant, Cell & Environment, 42, 2913-2930.
Bian X H, Li W, Niu C F, Wei W, Hu Y, Han J Q, Lu X, Tao J J, Jin M, Qin H, Zhou B, Zhang W K, Ma B, Wang G D, Yu D Y, Lai Y C, Chen S Y, Zhang J S. 2020. A class B heat shock factor selected for during soybean domestication contributes to salt tolerance by promoting flavonoid biosynthesis. New Phytologist, 225, 268-283.
Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y, Xia R. 2023. TBtools-II: A "one for all, all for one" bioinformatics platform for biological big-data mining. Molecular Plant, 16, 1733-1742.
Chen K, Li GJ, Bressan RA, Song CP, Zhu JK, Zhao Y. 2020. Abscisic acid dynamics, signaling, and functions in plants. Journal of Integrative Plant Biology, 62, 25-54.
Chen S, Zhang W, Zhang Q, Li B, Zhang M, Qin J, Shi W, Jia C. 2024. SlNAC12, a novel NAC-type transcription factor, confers salt stress tolerance in tomato. Plant Cell Reports, 44, 5.
Clayton W A, Albert N W, Thrimawithana A H, McGhie T K, Deroles S C, Schwinn K E, Warren B A, McLachlan A R G, Bowman J L, Jordan B R, Davies K M. 2018. UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants. Plant Journal, 96, 503-517.
Deng S, Xing P, Peng L, Lu J, Wu Y, Zhang Y, He Z, Yao X, Liu Y, Tang X. 2025. Exogenous application of abscisic acid enhanced 2-acetyl-1-pyrroline biosynthesis, accumulation, and antioxidant activities in aromatic rice. BMC Plant Biology, 25, 302.
Dong N Q, Sun Y, Guo T, Shi C L, Zhang Y M, Kan Y, Xiang Y H, Zhang H, Yang Y B, Li Y C, Zhao H Y, Yu H X, Lu Z Q, Wang Y, Ye W W, Shan J X, Lin H X. 2020. UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice. Nature Communications, 11, 2629.
Fan K, Yuan S, Chen J, Chen Y, Li Z, Lin W, Zhang Y, Liu J, Lin W. 2019. Molecular evolution and lineage-specific expansion of the PP2C family in Zea mays. Planta, 250, 1521-1538.
Feng S, Yao Y T, Wang B B, Li Y M, Li L, Bao A K. 2023. Flavonoids are involved in salt tolerance through ROS scavenging in the halophyte Atriplex canescens. Plant Cell Reports, 43, 5.
Finn R D, Bateman A, Clements J, Coggill P, Eberhardt R Y, Eddy S R, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer E L, Tate J, Punta M. 2014. Pfam: the protein families database. Nucleic Acids Research, 42, D222-230.
Fuchs S, Grill E, Meskiene I, Schweighofer A. 2013. Type 2C protein phosphatases in plants. FEBS Journal, 280, 681-693.
He Z, Wu J, Sun X, Dai M. 2019. The Maize Clade A PP2C Phosphatases Play Critical Roles in Multiple Abiotic Stress Responses. International Journal of Molecular Sciences, 20, 3573.
Hodges D M, DeLong J M, Forney C F, Prange R K. 1999. Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds. Planta, 207, 604-611.
Hu X, Xu Z, Xu W, Li J, Zhao N, Zhou Y. 2015. Application of γ-aminobutyric acid demonstrates a protective role of polyamine and GABA metabolism in muskmelon seedlings under Ca(NO3)2 stress. Plant Physiology and Biochemistry, 92, 1-10.
Hu S, Wang F, Feng y, Zhong P, Han R, Li G, Hu X. 2024. Genome-wide identification of SlNF-YA genes and functional characterization of SlNF-YA10a of tomato under saline-alkali stress. Scientia Horticulturae, 338, 113761.
Huang X, Liang Y, Zhang R, Zhang B, Song X, Liu J, Lu M, Qin Z, Li D, Li S, Li Y. 2023. . Plants (Basel), 12, 2418.
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Research, 36, D480-484.
Krzywińska E, Kulik A, Bucholc M, Fernandez M A, Rodriguez P L, Dobrowolska G. 2016. Protein phosphatase type 2C PP2CA together with ABI1 inhibits SnRK2.4 activity and regulates plant responses to salinity. Plant Signaling & Behavior, 11, e1253647.
Kumar S, Nei M, Dudley J, Tamura K. 2008. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings In Bioinformatics, 9, 299-306.
Li Q, Yu H M, Meng X F, Lin J S, Li Y J, Hou B K. 2018. Ectopic expression of glycosyltransferase UGT76E11 increases flavonoid accumulation and enhances abiotic stress tolerance in Arabidopsis. Plant Biology (Stuttg), 20, 10-19.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 25, 402-408.
Ma Y, Szostkiewicz I, Korte A, Moes D, Yang Y, Christmann A, Grill E. 2009. Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science, 324, 1064-1068.
Merlot S, Gosti F, Guerrier D, Vavasseur A, Giraudat J. 2001. The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway. Plant Journal, 25, 295-303.
Meyer K, Leube M P, Grill E. 1994. A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana. Science, 264, 1452-1455.
Mukhopadhyay R, Sarkar B, Jat HS, Sharma PC, Bolan NS. 2021. Soil salinity under climate change: Challenges for sustainable agriculture and food security. Journal of Environmental Management, 280:111736.
Pang Y, Cao L, Ye F, Ma C, Liang X, Song Y, Lu X. 2024. Identification of the Maize PP2C Gene Family and Functional Studies on the Role of ZmPP2C15 in Drought Tolerance. Plants, 13, 340.
Pertea M, Pertea G M, Antonescu C M, Chang T C, Mendell J T, Salzberg S L. 2015. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nature Biotechnology, 33, 290-295.
Raza A, Tabassum J, Fakhar A Z, Sharif R, Chen H, Zhang C, Ju L, Fotopoulos V, Siddique K H M, Singh R K, Zhuang W, Varshney R K. 2023. Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews In Biotechnology, 43, 1035-1062.
Rojas-Pierce M, Whippo C W, Davis P A, Hangarter R P, Springer P S. 2014. PLASTID MOVEMENT IMPAIRED1 mediates ABA sensitivity during germination and implicates ABA in light-mediated Chloroplast movements. Plant Physiology and Biochemistry, 83, 185-193.
Sachdev S, Ansari S A, Ansari M I, Fujita M, Hasanuzzaman M. 2021. Abiotic Stress and Reactive Oxygen Species: Generation, Signaling, and Defense Mechanisms. Antioxidants (Basel), 10, 277.
Shen N, Wang T, Gan Q, Liu S, Wang L, Jin B. 2022. Plant flavonoids: Classification, distribution, biosynthesis, and antioxidant activity. Food Chemistry, 383, 132531.
Singh A, Giri J, Kapoor S, Tyagi A K, Pandey G K. 2010. Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development. BMC Genomics, 11, 435.
Smith R D, Walker J C. 1996. PLANT PROTEIN PHOSPHATASES. Annu Rev Plant Physiol Plant Molecular Biology, 47, 101-125.
Song Z, Yang Q, Dong B, Li N, Wang M, Du T, Liu N, Niu L, Jin H, Meng D, Fu Y. 2022. Melatonin enhances stress tolerance in pigeon pea by promoting flavonoid enrichment, particularly luteolin in response to salt stress. Journal Of Experimental Botany, 73, 5992-6008.
Speisky H, Shahidi F, Costa de Camargo A, Fuentes J. 2022. Revisiting the Oxidation of Flavonoids: Loss, Conservation or Enhancement of Their Antioxidant Properties. Antioxidants (Basel), 11, 133.
Tan Y, Li M, Yang Y, Sun X, Wang N, Liang B, Ma F. 2017. Overexpression of MpCYS4, A Phytocystatin Gene from Malus prunifolia (Willd.) Borkh., Enhances Stomatal Closure to Confer Drought Tolerance in Transgenic Arabidopsis and Apple. Frontiers in Plant Science, 8, 33.
Wang J, Zhang Y, Wang J, Ma F, Wang L, Zhan X, Li G, Hu S, Khan A, Dang H, Li T, Hu X. 2024. Promoting γ-aminobutyric acid accumulation to enhances saline-alkali tolerance in tomato. Plant Physiology, 196, 2089-2104.
Wang Z, Ji H, Yuan B, Wang S, Su C, Yao B, Zhao H, Li X. 2015. ABA signalling is fine-tuned by antagonistic HAB1 variants. Nature Communications, 6,8138.
Wang X, Yin J, Wang J, Li J. 2023. Integrative analysis of transcriptome and metabolome revealed the mechanisms by which flavonoids and phytohormones regulated the adaptation of alfalfa roots to NaCl stress. Frontiers in Plant Science, 14, 1117868.
Wu H, Wu Z, Wang Y, Ding J, Zheng Y, Tang H, Yang L. 2021. Transcriptome and Metabolome Analysis Revealed the Freezing Resistance Mechanism in 60-Year-Old Overwintering Camellia sinensis. Biology (Basel), 10, 996.
Wu J, Lv S, Zhao L, Gao T, Yu C, Hu J, Ma F. 2023. Advances in the study of the function and mechanism of the action of flavonoids in plants under environmental stresses. Planta, 257, 108.
Wu Z, Luo L, Wan Y, Liu F. 2023. Genome-wide characterization of the PP2C gene family in peanut (Arachis hypogaea L.) and the identification of candidate genes involved in salinity-stress response. Frontiers in Plant Science, 14, 1093913.
Xu Z, Wang J, Zhen W, Sun T, Hu X. 2022. Abscisic acid alleviates harmful effect of saline-alkaline stress on tomato seedlings. Plant Physiology and Biochemistry, 175, 58-67.
Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y. 2008. Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. BMC Genomics, 9, 550.
Zeng H, Zheng T, Peng X, Tang Q, Xu H, Chen M. 2023. Transcriptomic and Targeted Metabolomics Analysis of Detached Lycium ruthenicum Leaves Reveals Mechanisms of Anthocyanin Biosynthesis Induction through Light Quality and Sucrose Treatments. Metabolites, 13, 1004.
Zhan X, Shen Q, Chen J, Yang P, Wang X, Hong Y. 2019. Rice sulfoquinovosyltransferase SQD2.1 mediates flavonoid glycosylation and enhances tolerance to osmotic stress. Plant, Cell & Environment, 42, 2215-2230.
Zhang G, Zhang Z, Luo S, Li X, Lyu J, Liu Z, Wan Z, Yu J. 2022. Genome-wide identification and expression analysis of the cucumber PP2C gene family. BMC Genomics, 23, 563.
Zhang L, Sun Y, Ji J, Zhao W, Guo W, Li J, Bai Y, Wang D, Yan Z, Guo C. 2023. Flavonol synthase gene MsFLS13 regulates saline-alkali stress tolerance in alfalfa. The Crop Journal, 11, 1218-1229.
|
