Scientia Agricultura Sinica ›› 2017, Vol. 50 ›› Issue (2): 216-227.doi: 10.3864/j.issn.0578-1752.2017.02.002

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Elite Alleles-Based Molecular Detection for Verticillium Wilt Resistance in Cotton

ZHAO YunLei, WANG HongMei, CHEN Wei, GONG HaiYan, SANG XiaoHui, CUI YanLi, ZHAO Pei   

  1. Cotton Research Institute, Chinese Academy of Agricultural Sciences/State Key Laboratory of Cotton Biology, Anyang 455000, Henan
  • Received:2016-07-01 Online:2017-01-16 Published:2017-01-16

Abstract: 【Objective】Detecting Verticillium wilt resistance in cotton by using molecular markers of elite alleles of Verticillium wilt resistance contributes to fast identification of disease resistance and direct selection of disease resistance genotypes, thus resolving the problems of time-consuming and poor efficiency in selection of disease resistance. 【Method】In this study, Verticillium wilt resistance of 125 elite cotton lines was estimated by using a disease nursery and greenhouse screening method, respectively. Elite alleles related to Verticillium wilt resistance were obtained from the earlier publication of the authors and the phenotypic effect of each elite allele was calculated. The number and the sum of effective value of elite alleles in each cotton line were used to study the possibility of elite alleles-based molecular detection for Verticillium wilt resistance. 【Result】Results of the study showed that widespread variation of Verticillium wilt resistance was observed in upland cotton. The range of relative disease index of Verticillium wilt resistance identified in field disease nursery and in greenhouse was 10.10-76.6 and 17.01-72.63, respectively. A total of 40 elite alleles were obtained and the effective values of each allele was in the range of -8.20--0.39. The number of elite alleles in each lines was in the range of 1-24. The sum of effective values of elite alleles in each line were in the range of -92.37--0.86. Correlation analysis showed that the sum of effective values of elite alleles had a significant positive correlation with relative disease index of Verticillium wilt resistance, and the correlation coefficient in field disease nursery and in greenhouse was 0.616 and 0.566, the number of elite alleles in each line had a significant negative correlation with relative disease index of Verticillium wilt resistance, and the correlation coefficient in field disease nursery and in greenhouse was -0.618 and -0.535, respectively. 【Conclusion】It was concluded that there is a significant correlation between the number of elite alleles, the sum of effective value of elite alleles and relative disease index of Verticillium wilt resistance, implying the accumulation of different elite alleles in one line can improve the disease resistance. The sum of effective value of elite alleles and the number of elite alleles in a cotton line can reflect the disease resistance, thus realizing the molecular identification of disease resistance in cotton.

Key words: cotton, Verticillium wilt, elite allele, molecular identification

[1]    马存, 简桂良, 孙文姬. 我国棉花抗黄萎病育种现状、问题及对策. 中国农业科学, 1997, 30(2): 58-64.
Ma C, Jian G L, Sun W J. Current status, problem and countermeasure on resistance breeding to verticillium wilt of cotton in China. Scientia Agricultura Sinica, 1997, 30(2): 58-64. (in Chinese)
[2]    徐理, 朱龙付, 张献龙. 棉花抗黄萎病机制研究进展. 作物学报, 2012, 38(9): 1553-1560.
Xu L, Zhu L F, Zhang X L. Research on resistance mechanism of cotton to Verticillium wilt. The Crop Journal, 2012, 38(9): 1553-1560. (in Chinese)
[3]    祁伟彦, 张永军, 张天真, 陈捷胤, 戴小枫. 基于人工病圃筛选和分子标记辅助的棉花抗黄萎病育种方法研究与应用. 分子植物育种, 2012, 10(5): 607-612.
Qi W Y, Zhang Y J, Zhang T Z, Chen J Y, Dai X F. Studies on the methods for cotton resistant breeding to Verticillium wilt by the screen of disease nursery and molecular marker-assisted selection. Molecular Plant Breeding, 2012, 10(5): 607-612. (in Chinese)
[4]    房慧勇, 马峙英. 棉花抗黄萎病机制及抗病性鉴定研究进展. 河北农业科学, 2002, 6(2): 1-7.
Fang H Y, Ma Z Y. Research advances on the resistance mechanism and resistance identification to Verticillium wilt of cotton. Journal of Hebei Agricultural Sciences, 2002, 6(2): 1-7. (in Chinese)
[5]    高玉千, 聂以春, 张献龙. 棉花抗黄萎病基因的QTL定位. 棉花学报, 2003, 15(2): 73-78.
Gao Y Q, Nie Y C, Zhang X L. QTL mapping of genes resistant to Verticillium wilt in cotton. Cotton Science, 2003, 15(2): 73-78. (in Chinese)
[6]    杜威世, 杜雄明, 马峙英. 棉花黄萎病抗性基因SSR标记研究. 西北农林科技大学学报(自然科学版), 2004, 32(3): 20-24.
Du W S, Du X M, Ma Z Y. Studies on SSR markers of resistance gene of Verticillium wilt in cotton. Journal of Northwest Sci-Tech University of Agriculture and Forestry (Natural Science Edition), 2004, 32(3): 20-24. (in Chinese)
[7]    王红梅, 张献龙, 贺道华, 林忠旭, 聂以春, 李运海, 陈伟. 陆地棉对黄萎病抗性的分子标记研究. 植物病理学报, 2005, 35(4): 333-339.
Wang H M, Zhang X L, He D H, Lin Z X, Nie Y C, Li Y H, Chen W. Detection of DNA markers associated with resistance to Verticillium dahliae in cotton. Acta Phytopathologica Sinica, 2005, 35(4): 333-339. (in Chinese)
[8]    Bolek Y, Kamal M E, Alan E P, Alois A B, Clint W M, Peggy M T, Reddy O U K. Mapping of Verticillium wilt resistance genes in cotton. Plant Science, 2005, 168: 1581-1590.
[9]    甄瑞, 王省芬, 马峙英, 张桂寅, 王雪. 海岛棉抗黄萎病基因SSR标记研究. 棉花学报, 2006, 18(5): 269-272.
Zhen R, Wang X F, Ma Z Y, Zhang G Y, Wang X. A SSR marker linked with the gene of Verticillium wilt resistance in Gossypium barbadense. Cotton Science, 2006, 18(5): 269-272. (in Chinese)
[10]   王省芬, 甄瑞, 马峙英, 张桂寅, 张艳, 王雪. 海岛棉品种抗黄萎病基因SSR标记的验证及克隆. 植物遗传资源学报, 2007, 8(2): 149-152.
Wang X F, Zhen R, Ma Z Y, Zhang G Y, Zhang Y, Wang X. Verification and cloning of ssr marker linked with the gene of Verticillium wilt resistance in Gossypium barbadense L.. Journal of Plant Genetic Resources,2007, 8(2): 149-152. (in Chinese)
[11]   Wang H M, Lin Z X, Zhang X L, Chen W, Guo X P, Nie Y C, Li Y H. Mapping and quantitative trait loci analysis of Verticillium wilt resistance genes in cotton. Journal of Integrative Plant Biology, 2008, 50(2): 174-182.
[12]   Yang C, Guo W Z, Li G Y, Gao F, Lin S S, Zhang T. QTLs mapping for Verticillium wilt resistance at seedling and maturity stages in Gossypium barbadense L.. Plant Science, 2008, 174: 290-298.
[13]   葛海燕, 汪业春, 郭旺珍, 张天真. 陆地棉抗黄萎病性状的遗传及分子标记研究. 棉花学报, 2008, 20(1): 19-22.
Ge H Y, Wang Y C, Guo W Z, Zhang T Z. Inheritance and molecular tagging of resistance against Verticillium wilt in upland cotton. Cotton Science, 2008, 20(1): 19-22. (in Chinese)
[14]   昝伟, 高峰, 刘海峰, 李国英, 宋武, 罗城, 李晖. 海岛棉抗黄萎病性状分子标记的研究及QTL的定位. 新疆农业科学, 2008, 45(5): 805-808.
Zan W, Gao F, Liu H F, Li G Y, Song W, Luo C, Li H. Molecular mark of resistance to Verticillium wilt of G. barbadence and mapping of QTL. Xinjiang Agricultural Sciences, 2008, 45(5): 805-808. (in Chinese)
[15]   蒋锋, 赵君, 周雷, 郭旺珍, 张天真. 陆地棉抗黄萎病基因的分子标记定位. 中国科学 C辑: 生命科学, 2009, 39(9): 849-861.
Jiang F, Zhao J, Zhou L, Guo W Z, Zhang T Z. Molecular mapping of Verticillium wilt resistance in upland cotton. Science in China Series C: Life Sciences, 2009, 39(9): 849-861. (in Chinese)
[16]   Fang H, Zhou H P, Sanogo S, Flynn R, Percy R G, Hughs S E, Ulloa M, Jones D C, Zhang J F. Quantitative trait locus mapping for Verticillium wilt resistance in a backcross inbred line population of cotton (Gossypium hirsutum ×Gossypium barbadense) based on RGA-AFLP analysis. Euphytica, 2013, 194: 79-91.
[17]   Ning Z Y, Zhao R, Chen H, Ai N J, Zhang X, Zhao J, Mei H X, Wang P, Guo W Z, Zhang T Z. Molecular tagging of a major quantitative trait locus for broad-spectrum resistance to Verticillium wilt in upland cotton cultivar prema. crop science, 2013, 53: 2304-2312.
[18]   王芙蓉, 刘任重, 王留明, 张传云, 刘国栋, 刘勤红, 马小波, 张 军. 陆地棉品种抗黄萎病性状的分子标记及其辅助选择效果, 棉花学报, 2007, 19(6): 424-431.
Wang F R, Liu R Z, Wang L M, Zhang C Y, Liu G D, Liu Q H, Ma X B, Zhang J. Molecular markers of Verticillium wilt resistance in upland cotton (Gossypium hirsutum L.) cultivar and their effects on assisted phenotypic selection. Cotton Science, 2007, 19(6): 424-431. (in Chinese)
[19]   孔祥瑞, 王红梅, 陈伟, 赵云雷, 李运海, 龚海燕, 桑晓慧. 陆地棉黄萎病抗性的分子标记辅助选择效果. 棉花学报, 2010, 22(6): 527-532.
Kong X R, Wang H M, Chen W, Zhao Y L, Li Y H, Gong H Y, Sang X H. Effect of molecular marker assisted selection to Verticillium wilt resistance in upland cotton breeding. Cotton Science, 2010, 22(6): 527-532. (in Chinese)
[20]   Flint-Garcia S A, Thuillet A C,Yu J M, Pressoir G, Romero S M, Mitchell S E, Doebley J, Kresovich S, Goodman M M, Buckler E S. Maize association population: a high-resolution platform for quantitative trait locus dissection. The Plant Journal, 2005, 44: 1054-1064.
[21]   Zhao Y L, Wang H M, Chen W, Li Y H. Genetic structure, linkage disequilibrium and association mapping of Verticillium wilt resistance in elite cotton (Gossypium hirsutum L.) germplasm population. PLoS ONE, 2014, 9(1): e86308.
[22]   朱荷琴, 吴征彬, 邹奎, 冯自力. 国家棉花品种区域试验抗枯黄萎病鉴定方法. 中国棉花, 2007, 34(11): 9-24.
Zhu H Q, Wu Z B, Zou K, Feng Z L. Identification method for Fusarium and Verticillium wilt in national cotton variety regional test. China Cotton, 2007, 34 (11): 9-24. (in Chinese)
[23]   朱荷琴, 冯自力, 李志芳, 赵丽红, 师勇强. 蛭石沙土无底纸钵定量蘸菌液法鉴定棉花品种(系)的抗黄萎病性. 中国棉花, 2010, 12: 15-17.
Zhu H Q, Feng Z L, Li Z F, Zhao L H, Shi Y Q. Identification method for Verticillium wilt resistance in cotton cultivars by using paper pots containing vermiculite and sand inoculated with spore suspension. China Cotton, 2010, 12: 15-17. (in Chinese)
[24]   Zhang T Z, Qian N,Zhu X F, Chen H, Wang S, Mei H X, Zhang Y M. Variations and transmission of QTL alleles for yield and fiber qualities in upland cotton cultivars developed in China. PLoS ONE, 2013, 8(2): e57220.
[25]   张军, 武耀廷, 郭旺真. 棉花微卫星标记的PAGE/银染快速检测. 棉花学报, 2000, 12(5): 267-269.
Zhang J, Wu Y T, Guo W Z. Fast screening of microsatellite markers in cotton with PAGE/silver staining. Cotton Science, 2000, 12(5): 267-269. (in Chinese)
[26]   李社增, 马平, HUANG H C, 陈新华. 相对病情指数划分棉花品种杭病性的统计学基础. 棉花学报, 2003, 15(6): 344-347.
Li S Z, Ma P, Huang H C, Chen X H. Statistical basis for determining Verticillium wilt resistance of cotton cultivar/line according to relative disease index. Cotton Science, 2003, 15(6): 344-347. (in Chinese)
[27]   王铭, 臧丽丽, 范凯, 李凤, 袁淑娜, 申浩, 王学德. 黄萎病菌毒素联合法鉴定棉花对黄萎病的抗性. 中国农业科学, 2015, 48(9): 1678-1688.
Wang M, Zang L L, Fan K, Li F, Yuan S N, Shen H, Wang X D. A combined identification method for the Verticillium wilt resistance in cotton by using pathogen toxin. Scientia Agricultura Sinica, 2015, 48(9): 1678-1688. (in Chinese)
[28]   王红梅, 张献龙, 李运海, 聂以春. 陆地棉黄萎病抗性遗传分析. 棉花学报, 2004, 16(2): 84-88.
Wang H M, Zhang X L, Li Y H, Nie Y C. Analysis on the Inheritance of Verticillium dahliae Resistance in G. hirsutum. Cotton Science, 2004, 16(2): 84-88. (in Chinese)
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