Scientia Agricultura Sinica ›› 2014, Vol. 47 ›› Issue (20): 4078-4085.doi: 10.3864/j.issn.0578-1752.2014.20.016
• ANIMAL SCIENCE·VETERINARY SCIENCERE·SOURCE INSECT • Previous Articles Next Articles
WEI Cai-hong, WU Ming-ming, LIU Rui-zao, ZHAO Fu-ping, ZHANG Li, DU Li-xin
[1] Wei W, Ba Z, Gao M, Wu Y, Ma Y, Amiard S, White C I, Rendtlew Danielsen J M, Yang Y G, Qi Y. A role for small RNAs in DNA double-strand break repair. Cell, 2012, 149(1):101-112.
[2] Shirayama M, Seth M, Lee H C, Gu W, Ishidate T, Conte D, Jr Mello C C: piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell, 2012, 150(1):65-77.
[3] Cabianca DS, Casa V, Bodega B, Xynos A, Ginelli E, Tanaka Y, Gabellini D: A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell, 2012, 149(4):819-831.
[4] Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, Tramontano A, Bozzoni I: A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell, 2011, 147(2):358-369.
[5] Spizzo R, Almeida MI, Colombatti A, Calin GA: Long non-coding RNAs and cancer: a new frontier of translational research? Oncogene, 2012, 31(43):4577-4587.
[6] Wapinski O, Chang H Y. Long noncoding RNAs and human disease. Trends in Cell Biology, 2011, 21(6):354-361.
[7] 于红,表观遗传学:生物细胞非编码RNA调控的研究进展. 遗传, 2009, 31(11):1077-1086.
Yu H. Epigenetics: advances of non-coding RNAs regulation in mammalian cells. Hereditas, 2009, 31(11):1077-1086.(in Chinese)
[8] 张绍峰, 李晓荣, 孙传宝, 何玉科. 植物非编码RNA调控春化作用的表观遗传.遗传, 2012, 34(7):38-43.
Zhang S F, Li X R, Sun C B , He Y K. Epigenetics of plant vernalization regulated by non-coding RNAs. Hereditas, 2012, 34(7):38-43. (in Chinese)
[9] Xiao B, Zhang X, Li Y, Tang Z, Yang S, Mu Y, Cui W, Ao H, Li K. Identification, bioinformatic analysis and expression profiling of candidate mRNA-like non-coding RNAs in Sus scrofa. Journal of Genetics and Genomics, 2009, 36(12):695-702.
[10] Brown C J, Ballabio A, Rupert J L, Lafreniere R G, Grompe M, Tonlorenzi R, Willard H F. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature, 1991, 349(6304):38-44.
[11] Brannan C I, Dees E C, Ingram R S, Tilghman S M.The product of the H19 gene may function as an RNA. Molecular and Cellular Biology, 1990, 10(1):28-36. [12] Okazaki Y, Furuno M, Kasukawa T, etal. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 2002, 420(6915):563-573.
[13] Dinger M E, Amaral P P, Mercer T R, Pang K C, Bruce S J, Gardiner B B, Askarian-Amiri ME, Ru K, Solda G, Simons C, Sunkin S M, Crowe M L, Grimmomd S M, Perkins A C, Mattick J S. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Research, 2008, 18(9):1433-1445.
[14] Prasanth K V, Spector D L. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes & Development, 2007, 21(1):11-42.
[15] Mercer T R, Dinger M E, Sunkin S M, Mehler M F, Mattick J S. Specific expression of long noncoding RNAs in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America, 2008, 105(2):716-721.
[16] International Human Genome Sequencing C. Finishing the euchromatic sequence of the human genome. Nature, 2004, 431(7011): 931-945.
[17] Pauli A, Valen E, Lin M F, Garber M, Vastenhouw N L, Levin J Z, Fan L, Sandelin A, Rinn J L, Regev A, Schier A F. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Research, 2012, 22(3):577-591.
[18] Maenner S, Blaud M, Fouillen L, Savoye A, Marchand V, Dubois A, Sanglier-Cianferani S, Van Dorsselaer A, Clerc P, Avner P, Visvikis A, Branlant C. 2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biology, 2010, 8(1): e1000276.
[19] Kino T, Hurt DE, Ichijo T, Nader N, Chrousos G P. Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Science Signaling, 2010, 3(107): ra8.doi:10. 1126/scisignal.200568.
[20] Hung T, Wang Y, Lin M F, Koegel A K, Kotake Y, Grant G D, Horlings H M, Shah N, Umbricht C, Wang P, Wang Y, Kong B, Langerod A, Borresen-Dale A, Kim S K, van de Vijver M, Sukumar S, Whitfield M L, Kellis M, Xiong Y, Wong D J, Chang H Y. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nature Genetics, 2011, 43(7):621-629.
[21] Wan G, Mathur R, Hu X, Liu Y, Zhang X, Peng G, Lu X. Long non-coding RNA ANRIL (CDKN2B-AS) is induced by the ATM-E2F1 signaling pathway. Cellular Signalling, 2013,25: 1086-1095.
[22] Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi P P. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell, 2011, 146(3):353-358.
[23] Jalali S, Bhartiya D, Lalwani M K, Sivasubbu S, Scaria V. Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions. PloS One, 2013, 8(2):e53823.
[24] Karreth F A, Tay Y, Perna D, Ala U, Tan S M, Rust A G, DeNicola G, Webster K A, Weiss D, Perez-Mancera P A, Krauthammer M, Halaban R, Provero P, Adams D J, Yuveson D A, Pandofi P P. In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell, 2011, 147(2): 382-395.
[25] Tay Y, Kats L, Salmena L, Weiss D, Tan S M, Ala U, Karreth F, Poliseno L, Provero P, Di Cunto F, Lieberman J, Rigoutsos I, Pandolfi P P. Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell, 2011, 147(2):344-357.
[26] Mourtada-Maarabouni M, Pickard M R, Hedge V L, Farzaneh F, Williams G T. GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene, 2009, 28(2): 195-208.
[27] Huarte M, Guttman M, Feldser D, Garber M, Koziol M J, Kenzelmann-Broz D, Khalil A M, Zuk O, Amit I, Rabani M, Attardi L D,Regev A, Lander E S. Jacks T, Rinn J L. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell, 2010, 142(3):409-419.
[28] Tian D, Sun S, Lee J T. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell, 2010, 143(3):390-403.
[29] Sanchez-Elsner T, Gou D, Kremmer E, Sauer F. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science, 2006, 311(5764):1118-1123.
[30] Tsai M C, Manor O, Wan Y, Mosammaparast N, Wang J K, Lan F, Shi Y, Segal E, Chang H Y. Long noncoding RNA as modular scaffold of histone modification complexes. Science, 2010, 329(5992):689-693.
[31] Gupta R A, Shah N, Wang K C, Kim J, Horlings H M, Wong D J, Tsai M C, Hung T, Argani P, Rinn J L, Wang Y L, Brzoska P, Kong B, Li R, West R B, van de Vijver M J, Sukumar S, Chang H Y. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature, 2010, 464(7291):1071-1076.
[32] Gibb E A, Brown C J, Lam W L. The functional role of long non- coding RNA in human carcinomas. Molecular Cancer, 2011, 10: 38.
[33] Kelley R L, Kuroda M I. Noncoding RNA genes in dosage compensation and imprinting. Cell, 2000, 103(1):9-12.
[34] Gabory A, Jammes H, Dandolo L. The H19 locus: role of an imprinted non-coding RNA in growth and development. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 2010, 32(6):473-480.
[35] Smits G, Mungall A J, Griffiths-Jones S, Smith P, Beury D, Matthews L, Rogers J, Pask A J, Shaw G, VandeBerg J L, McCarrey J R, the SAVOIR Consortium, Renfree K B, Reik W, Dunham I. Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians. Nature Genetics, 2008, 40(8):971-976.
[36] Zhang Y, Tycko B. Monoallelic expression of the human H19 gene. Nature Genetics, 1992, 1(1):40-44.
[37] Arney K L. H19 and Igf2--enhancing the confusion? Trends in Genetics, 2003, 19(1):17-23.
[38] Hark A T, Schoenherr C J, Katz D J, Ingram R S, Levorse J M, Tilghman S M.CTCF mediates methylation-sensitive enhancer- blocking activity at the H19/Igf2 locus. Nature, 2000, 405(6785): 486-489.
[39] Schoenherr C J, Levorse J M, Tilghman S M. CTCF maintains differential methylation at the Igf2/H19 locus. Nature Genetics, 2003, 33(1):66-69.
[40] Leighton P A, Saam J R, Ingram R S, Tilghman S M. Genomic imprinting in mice: its function and mechanism. Biology Reproduction, 1996 Feb;54(2):273-278.
[41] Pandey R R, Mondal T, Mohammad F, Enroth S, Redrup L, Komorowski J, Nagano T, Mancini-Dinardo D, Kanduri C.Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Molecular Cell, 2008, 32(2):232-246.
[42] Lee J T. The X as model for RNA's niche in epigenomic regulation. Cold Spring Harbor Perspectives in Biology, 2010, 2(9):a003749.
[43] Guttman M, Amit I, Garber M, French C, Lin M F, Feldser D, Huarte M, Zuk O, Carey B W, Cassady J P, Cabili M N, Jaenisch R, Mikkelsen T S, Jacks T, Hacohen N, Bernstein B E, Kellis M, Regev A, Rinn J L, Lander E S. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature, 2009, 458(7235):223-227.
[44] Masui O, Heard E. RNA and protein actors in X-chromosome inactivation. Cold Spring Harbor Symposia on Quantitative Biology, 2006, 71:419-428.
[45] Huang W, Long N, Khatib H. Genome-wide identification and initial characterization of bovine long non-coding RNAs from EST data. Animal Genetics, 2012, 43(6):674-682.
[46] Ren H, Li Y, Tang Z, Yang S, Mu Y, Cui W, Ao H, Du L, Wang L, Li K. Genomic structure, chromosomal localization and expression profile of a porcine long non-coding RNA isolated from long SAGE libraries. Animal Genetics, 2009, 40(4):499-508.
[47] Li T, Wang S, Wu R, Zhou X, Zhu D, Zhang Y. Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing. Genomic, 2012, 99(5): 292-298.
[48] Yang F, Huo X S, Yuan S X, Zhang L, Zhou W P, Wang F, Sun S H. Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis. Molecular cell. 2013, 49(6): 1083-96. [49] 王富博. 血浆长链非编码RNA应用于前列腺癌早期诊断的研究. 中国优秀硕士学位论文全文数据库.
Wang F B.The Study of Long Non-coding RNA as a Novel Plasma Biomarker for Early Diagnosis of Prostate Cancer, China excellent full-text database ofMaster degree theses . (in Chinese)
[50] 钱天梅, 高蓉, 于彬, 丁斐, 顾晓松. 大鼠坐骨神经缺损后背根神经节组织lncRNA表达变化. 交通医学, 2012(4): 306-308.
Qian T M, Gao R, Yu B, Ding F, Gu X S. Altered lncRNA expression following sciatic nerve resection in rats. Journal of Communications,2012(4):306-308. (in Chinese)
[51] 曹达龙, 叶定伟, 张世林, 戴波, 张海梁, 沈益君, 朱耀, 朱一平, 施国海, 马春光, 肖文军, 秦晓健, 林国文, 姚旭东. 前列腺癌特异抗原3对前列腺癌LNCaP细胞增殖的影响. 中国癌症杂志, 2012, 22(2): 135-138.
Cao D L, Ye D W, Zhang S L, Dai B, Zhang H L, Shen Y J, Zhu Y, Zhu Y P, Shi G H, Ma C G, Xiao W J, Qin X J, Yao X D. Effection of prostate cancer antigen 3 (PCA3) on proliferation of LNCaP cells. China Oncology, 2012, 22(2):135-138. (in Chinese)
[52] Yin Q F, Yang L, Zhang Y, Xiang JF, Wu YW, Carmichael G G, Chen LL. Long noncoding RNAs with snoRNA ends. Molecular Cell, 2012, 48(2):219-230.
[53] 夏天, 肖丙秀, 郭俊明. 长链非编码RNA的作用机制及其研究方法. 遗传, 2013(3):269- 280.
Xia T, Xiao B X, Guo J M. Acting mechanisms and research methods of longnoncoding RNAs. Hereditas, 2013(3):269-280. (in Chinese) |
[1] | YANG XinRan,MA XinHao,DU JiaWei,ZAN LinSen. Expression Pattern of m6A Methylase-Related Genes in Bovine Skeletal Muscle Myogenesis [J]. Scientia Agricultura Sinica, 2023, 56(1): 165-178. |
[2] | LIU YuFang,CHEN YuLin,ZHOU ZuYang,CHU MingXing. miR-221-3p Regulates Ovarian Granulosa Cells Apoptosis by Targeting BCL2L11 in Small-Tail Han Sheep [J]. Scientia Agricultura Sinica, 2022, 55(9): 1868-1876. |
[3] | WU Yan,ZHANG Hao,LIANG ZhenHua,PAN AiLuan,SHEN Jie,PU YueJin,HUANG Tao,PI JinSong,DU JinPing. circ-13267 Regulates Egg Duck Granulosa Cells Apoptosis Through Let-7-19/ERBB4 Pathway [J]. Scientia Agricultura Sinica, 2022, 55(8): 1657-1666. |
[4] | WANG JiaMin,SHI JiaChen,MA FangFang,CAI Yong,QIAO ZiLin. Effects of Soy Isoflavones on the Proliferation and Apoptosis of Yak Ovarian Granulosa Cells [J]. Scientia Agricultura Sinica, 2022, 55(8): 1667-1675. |
[5] | SHU JingTing,SHAN YanJu,JI GaiGe,ZHANG Ming,TU YunJie,LIU YiFan,JU XiaoJun,SHENG ZhongWei,TANG YanFei,LI Hua,ZOU JianMin. Relationship Between Expression Levels of Guangxi Partridge Chicken m6A Methyltransferase Genes, Myofiber Types and Myogenic Differentiation [J]. Scientia Agricultura Sinica, 2022, 55(3): 589-601. |
[6] | CHEN Yu,ZHU HaoZhe,CHEN YiChun,LIU Zheng,DING Xi,GUO Yun,DING ShiJie,ZHOU GuangHong. Differentiation of Porcine Muscle Stem Cells in Three-Dimensional Hydrogels [J]. Scientia Agricultura Sinica, 2022, 55(22): 4500-4512. |
[7] | LIU Xin,ZHANG YaHong,YUAN Miao,DANG ShiZhuo,ZHOU Juan. Transcriptome Analysis During Flower Bud Differentiation of Red Globe Grape [J]. Scientia Agricultura Sinica, 2022, 55(20): 4020-4035. |
[8] | LI LiYing,HE YingTing,ZHONG YuYi,ZHOU XiaoFeng,ZHANG Hao,YUAN XiaoLong,LI JiaQi,CHEN ZanMou. CTNNB1 Regulates the Function of Porcine Ovarian Granulosa Cells [J]. Scientia Agricultura Sinica, 2022, 55(15): 3050-3061. |
[9] | ZHANG WeiDong,ZHENG YuJie,GE Wei,ZHANG YueLang,LI Fang,WANG Xin. Identification of Cashmere Dermal Papilla Cells Based on Single- Cell RNA Sequencing Technology [J]. Scientia Agricultura Sinica, 2022, 55(12): 2436-2446. |
[10] | KE Na,HAO ZhiYun,WANG JianQing,ZHEN HuiMin,LUO YuZhu,HU Jiang,LIU Xiu,LI ShaoBin,ZHAO ZhiDong,HUANG ZhaoChun,LIANG WeiWei,WANG JiQing. The miR-221 Inhibits the Viability and Proliferation of Ovine Mammary Epithelial Cells by Targeting IRS1 [J]. Scientia Agricultura Sinica, 2022, 55(10): 2047-2056. |
[11] | ZHANG Jing,ZHANG JiYue,YUE YongQi,ZHAO Dan,FAN YiLing,MA Yan,XIONG Yan,XIONG XianRong,ZI XiangDong,LI Jian,YANG LiXue. LKB1 Regulates Steroids Synthesis Related Genes Expression in Bovine Granulosa Cells [J]. Scientia Agricultura Sinica, 2022, 55(10): 2057-2066. |
[12] | NIE XingHua, ZHENG RuiJie, ZHAO YongLian, CAO QingQin, QIN Ling, XING Yu. Genetic Diversity Evaluation of Castanea in China Based on Fluorescently Labeled SSR [J]. Scientia Agricultura Sinica, 2021, 54(8): 1739-1750. |
[13] | JIANG ChunHui,SUN XuDong,TANG Yan,LUO ShengBin,XU Chuang,CHEN YuanYuan. Curcumin Alleviates H2O2-Induced Oxidative Stress in Bovine Mammary Epithelial Cells Via the Nrf2 Signaling Pathway [J]. Scientia Agricultura Sinica, 2021, 54(8): 1787-1794. |
[14] | JiaQi WANG,YuHong DONG,JuLing JIANG,JianNing QIAN,WenTao WEI,GuoLiang SONG,JinBo JIAO,XinXin GUAN,GuoBiao JI,YeXin ZHANG. Based on PK15 Cell Line for PCV2 Fully Suspension Culture Process [J]. Scientia Agricultura Sinica, 2021, 54(6): 1280-1287. |
[15] | HU RongRong,DING ShiJie,GUO Yun,ZHU HaoZhe,CHEN YiChun,LIU Zheng,DING Xi,TANG ChangBo,ZHOU GuangHong. Effects of Trolox on Proliferation and Differentiation of Pig Muscle Stem Cells [J]. Scientia Agricultura Sinica, 2021, 54(24): 5290-5301. |
|