Scientia Agricultura Sinica ›› 2013, Vol. 46 ›› Issue (14): 3022-3031.doi: 10.3864/j.issn.0578-1752.2013.14.018

• ANIMAL SCIENCE·VETERINARY SCIENCERE·SOURCE INSECT • Previous Articles     Next Articles

Association of Single Nucleotide Polymorphism of H-FABP and HSL Genes with Growth Traits in Maiwa Yak

 CHAI  Zhi-Xin-1, WANG  Yong-1, LUO  Xiao-Lin-2, WU  Zhi-Juan-1, LIU  Zhong-Na-1, ZHONG  Jin-Cheng-1   

  1. 1.Key Laboratory of Animal Genetics and Breeding, Southwest University for Nationalities, State Ethnic Affairs Commission and Ministry of Education, Chengdu 610041
    2.Sichuan Academy of Grassland Science, Chengdu 610041
  • Received:2013-01-15 Online:2013-07-15 Published:2013-04-07

Abstract: 【Objective】Correlations between SNP of Maiwa yak heart fatty acid-binding protein (H-FABP), hormone-sensitive lipase (HSL) genes and growth traits were studied in order to provide a theoretical basis for the two candidate genes in expression regulation in the yak. 【Method】Maiwa yak and partial sequences of H-FABP and HSL genes were used as experimental samples and candidate genes. The genetic diversity of Maiwa yak was studied by PCR-SSCP, and the alleles frequency, genotype frequency, equilibrium analysis of Hardy-Weinberg, heterozygosity (H), effective numbers of alleles (Ne) and polymorphism information content (PIC) by means of statistics method. The correlation between the candidate genes in different genotypes and the circumference of growth traits was analyzed.【Result】Polymorphism of H-FABP and HSL genes of some exon portions in Maiwa yak were found. There are three genotypes. The fitness test showed that only HSL gene exon 8 on polymorphic loci in Hardy-Weinberg equilibrium state and the rest of the polymorphic loci were deviation. H-FABP gene exon7 loci existed T→C mutation of 7 339 bp which didn't result in change of amino acid. HSL gene exon7 loci existed in G→C mutation of 6 883 bp, A→G mutation of 6 816bp which led to amino acid from D to G. Analysis indicated that interaction effect of the polymorphism loci genotype and growth traits was significantly (P<0.01). And A→G mutation of 10 183 bp in exon 8 which led to amino acid from C to G.【Conclusion】H-FABP and HSL genes in Maiwa yak have genetic polymorphism. A6816G genotype can be used as molecular marker.

Key words: Maiwa yak , H-FABP gene , HSL gene , polymorphism

[1]乔海云, 赵倩君, 姚娜, 卢亚洲, 孟详人, 韩健林, 关伟军, 马月辉. 绵羊H-FABP 基因单核苷酸多态性的研究. 遗传, 2009, 31(7): 725-731.

Qiao H Y, Zhao Q J, Yao N, Lu Y Z, Men X R, Han J L, Guan W J, Ma Y H. Study on single nucleotide polymorphisms of H -FABP gene in sheep. Hereditas, 2009, 31(7): 725-731. (in Chinese)

[2]邓龙华, 谢亮, 罗成龙, 聂庆华, 张细权. 鸡心脏型脂肪酸结合蛋白(H-FABP)基因多态性对肉质性状和组织表达的影响. 农业生物技术学报, 2010, 81(3): 545-555.

Deng L H, Xie L, Luo C L, Nie Q H, Zhang X Q. Association of heart fatty acid-binding protein(H-FABP) gene polymorphisms with chicken meat quality traits. Journal of Agricultural Biotechnology, 2010, 81(3): 545-555. (in Chinese)

[3]Yin Y H, Li B C, Wei G H, Zhu C Y, Li W, Zhang Y N, Du L X, Cao W G. Xuhuai goat H-FABP gene clone, sub cellular localization of expression products and the preparation of transgenic micex. DNA and Cell Biology, 2012, 31(5): 753-760.

[4]Frayn K N, Coppack S W, Fielding B A, Humphreys S M. Coordinated regulation of  hormone-sensitive lipase and lipoprotein lipase in the human adipose tissue in vivo: implications for control of fat storage and fat mobilization. Advance Enzyme Regulation, 1995, 35: 163-178.

[5]Liu Z H, Yang J L, Yang F Y, Long D B, Pan K C. Quick and sensitive determination of gene expression of hormone-sensitive lipase by real-time PCR. Energy Procedia, 2011, 1: 386-388.

[6]Yeaman S T. Hormone-sensitive lipase a multipurpose enzyme in lipid metabolism. Biochimicaet Biophysica Acta, 1990, 1052(1): 128-132.

[7]David M L, Schellar G B. Bos grunniens and Bos mutus(Artiodactyla: Bovidae). Mammalian Species, 2009, 836: 1-17.

[8]Gerbens F, Rettenberger G, Lenstra J A, Veerkamp J H, Arendonk J A, Pas M F. Characterization ,chromosomal localization, and genetic variation of the porcine heart fatty acid-binding protein gene. Mammalian Genome, 1997, 8: 328-332.

[9]李长龙, 潘玉春, 孟和, 王子林, 黄雪根. H-FABP、MC4R、ADD1基因多态性在3个猪群中分布及其肌肉脂肪和背膘的相关研究. 遗传, 2006, 28(2): 159-164.

Li C L, Pan Y C, Meng H, Wang Z L, Huang X G. Distributions of polymorph ism of ADD1, MC4R, H-FABP gene, associated with IMF and BF in three populations in pig. Hereditas, 2006, 28(2): 159-164. (in Chinese)

[10]曲亮, 黄瑞华, 李开桢, 邱新深, 于传军, 黄春玲, 王蒙, 周波, 王钧顺. H-FABP和HSL基因多态性对苏淮猪胴体性状的影响. 南京农业大学学报, 2008, 31(3): 107-112.

Qu L, Huang R H, Li K Z, Qiu X S, Yu C J, Huang C L, Wang M, Zhou B, Wang J S. Effects of polymorphisms of H-FABP and HSL gene on carcass traits in Suhuai pigs. Journal of Nanjing Agricultural University, 2008, 31(3): 107-112. (in Chinese)

[11]Chen Q M, Wang H, Zeng Y Q, Chen W. Developmental changes and effect on intramuscular fat content of H-FABP and A-FABP mRNA expression in pigs. Journal of Applied Genetics, 2013, 54(1): 119-123.

[12]文力正, 赵玉民, 张国梁, 姜昊, 王聪明, 赵志辉, 张嘉保, 袁宝, 高妍. 草原红牛H-FABP基因单核苷酸多态性及其对肉质的影响. 中国农学通报, 2008, 24(5): 17-21.

Wen L Z, Zhao Y M, Zhang G L, Jiang H, Wang C M, Zhao Z H, Zhang J B, Yuan B, Gao Y. Single nucleltide polymorphism of H-FABP gene and effect with meat quality in red steppe. Chinese Agricultural Science Bulletin, 2008, 24(5): 17-21. (in Chinese)

[13]Knoll A, Stlatill A, Nebola M, Cepica S. Chrachaterization of a polymorphism in exon 1 of  the porcine hormone-sensitive lipase(LIPE) gene. Animal Genetics, 1998, 29(6): 462-463.

[14]钟金城, 马志杰, 陈智华, 字向东, 常怀普, 刘盛纲. 牦牛心脏脂肪酸结合蛋白(H-FABP)基因的克隆及序列分析. 中国农业科学, 2006, 39(8): 1639-1650.

Zhong J C, Ma Z J, Chen Z H, Zi X D, Chang H P, Liu S G. Cloning and sequence analysis of yak heart fatty acid-binding protein(H-FABP) gene. Scientia Agricultura Sinica, 2006, 39(8): 1639-1650. (in Chinese)

[15]曹健, 罗玉柱, 胡江, 刘秀, 李少斌, 吴应童. 甘南牦牛H-FABP 基因CDS区多态性及生物信息学分析. 甘肃农业大学学报, 2012, 47(4): 14-20.

Cao J, Luo Y Z, Hu J, Liu X, Li S B, Wu Y T. Polymorphism and bioinformatics analysis of CDS in H-FABP gene in Gannan yak. Journal of Gansu Agricultural University, 2012, 47(4): 14-20. (in Chinese)

[16]马志杰, 钟金城, 字向东, 陈智华, 徐惊涛, 金双, 常怀普, 宋海峰, 刘建磊. 3个牦牛群体激素敏感脂肪酶(HSL)基因外显子Ⅰ的多态性. 中国农业科学, 2009, 42(1): 370-376.

Ma Z J, Zhong J C, Zi X D, Chen Z H, Xu J T, Jin S, Chang H P, Song H F, Liu J L. Polymorphism of exonⅠof hormone- sensitive lipase(HSL) gene in three Chinese yak populations. Scientia Agricultura Sinica, 2009, 42(1): 370-376. (in Chinese)

[17]季维智. 遗传多样性研究的原理与方法. 浙江: 科学技术出版社, 1999.

Ji W Z. Principles and Methods of Genetic Diversity Study. Zhejiang: Science and Technology Press, 1999. (in Chinese)

[18]王卓, 昝林森. 秦川牛H-FABP 基因第1外显子SNP 及其与部分肉用性状相关性的研究. 西北农林科技大学学报: 自然科学版, 2008, 36(11): 11-15.

Wang Z, Zan L S. Study on SNP of H-FABP gene extron 1 and its association with some meat traits in Qinchuan cattle. Journal of Northwest A& F University: Natural Sciences, 2008, 36(11): 11-15. (in Chinese)

[19]李武峰, 许尚忠, 曹红鹤, 李宏滨. 3个杂交牛种H-FABP基因第二内含子的遗传变异与肉品质性状的相关分析. 畜牧兽医学报, 2004, 35(3): 252-255.

Li W F, Xu S Z , Cao H H, Li H B. Genetic variation inintron2 of H-FABP gene in three bovine hybrids and the relationships with meat quality traits. Acta Veterinaria et Zoot echnica Sinica, 2004, 35(3): 252-255. (in Chinese)

[20]周国利, 朱奇, 郭善利, 吴玉厚. 鲁西黄牛H-FABP基因的多态性及其与肉质性状关系的分析. 西北农业学报, 2005, 14(3): 5-7.

Zhou G L, Zhu Q, Guo S L, Wu Y H. Analysis on polymorphism of H-FABP gene in Luxi cattle and the relationships with meat quality traits. Acta Agricultura Boreali Occidentalis Sinica, 2005, 14(3): 5-7. (in Chinese)

[21]马志杰, 钟金城, 徐惊涛, 魏雅萍, 窦全林, 卓娅. 巴州牦牛HSL基因外显子I PCR-RFLP分析. 动物生物技术通报, 2008, 11(1): 279-283.

Ma Z J, Zhong J C, Xu J T, Wei Y P, Dou Q L, Zhuo Y. Polymorphism of exon I of hormone-sensitive lipase(HSL) gene in Bazhou yak populations. Animal Biotechnology Bulletin, 2008, 11(1): 279-283. (in Chinese)

[22]文力正, 赵玉民, 姜昊, 张国梁, 戴立胜, 赵志辉, 陈承祯, 张嘉 保. 草原红牛改良群体H-FABP 基因SNP及其与肉质性状的相关分析. 中国畜牧兽医, 2008, 35(7): 66-69.

Wen L Z, Zhao Y M, Jiang H, Zhang G L, Dai L S, Zhao Z H, Chen C Z, Zhang J B. Single nucleltide polymorphism of H-FABP gene and correlation analysis with meat quality traits in red steppe crossed herds. China Animal Husbandry and Veterinary Medicine, 2008, 35(7): 66-69. (in Chinese)

[23]王珊. 秦川牛及其杂交后代生长发育性状几个候选基因的遗传分析[D]. 杨凌: 西北农林科技大学, 2006.

Wang S. Genetical analysis of some candidate genes for growth and development traits in Qinchuan cattle and its hybrid off spring cattle[D]. Shanxi: Northwest A & F University, 2006. (in Chinese)

[24]Specht B, Bartetzko N, Hohoff C, Kuhl H, Franke R, BÖrchers T, Spener F. Mammary derived growth inhibitor is not a distinct protein but a mix of heart-type and adipocyte-type fatty acid-binding protein. Journal of Biological Chemistry, 1996, 271: 19943-19949.

[25]陈利容. 猪激素敏感脂肪酶(HSL)基因PCR-RFLP多态性及其与生产性能的相关研究[D]. 太谷: 山西农业大学, 2005.

Chen L R. Study on polymorphisms of HSL gene PCR-RFLP and its association with production performance in swine[D]. Taigu: Shanxi Agricultural University, 2005. (in Chinese)
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