Ahmadjian V, John C, Moore A D. 2019. Fungus. In: Encyclopædia Britannica. Austin, TX, US.
Arneson P A, Mai W F. 1976. Root diseases of fruit trees in New York State. VII. Costs and returns of preplant soil fumigation in a replanted apple orchard. Plant Disease Reporter, 60, 1054–1057.
Bakker A W, Schippers B. 1987. Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas SPP-mediated plant growth-stimulation. Soil Biology and Biochemistry, 19, 451–457. 
Benizri E, Piutti S, Verger S, Pagès L, Vercambre G, Poessel J L, Michelot P. 2005. Replant diseases: Bacterial community structure and diversity in peach rhizosphere as determined by metabolic and genetic fingerprinting. Soil Biology and Biochemistry, 37, 1738–1746. 
Braun P G. 1995. Effects of Cylindrocarpon and Pythium species on apple seedlings and potential role in apple replant disease. Canadian Journal of Plant Pathology, 17, 336–341. 
Bull C T, Coutinho T A, Denny T P, Firrao G,  Fischer-Le Saux M, Li X, Saddler G S, Scortichini M, Stead D E, Takikawa Y. 2015. List of new names of plant pathogenic bacteria (2011–2012). Journal of Plant Pathology, 96, 223–226. 
Caballero-Mellado J, Onofre-Lemus J, Estrada-de Los Santos P, Martínez-Aguilar L. 2007. The tomato rhizosphere, an environment rich in nitrogen-fixing Burkholderia species with capabilities of interest for agriculture and bioremediation. Applied and Environmental Microbiology, 73, 5308–5319. 
Caporaso J G, Kuczynski J, Stombaugh J, Bittinger K, Bushman F D, Costello E K, Fierer N, Pena A G, Goodrich J K, Gordon J I, Huttley G A, Kelley S T, Knights D, Koenig J E, Ley R E, Lozupone C A, McDonald D, Muegge B D, Pirrung M, Reeder J, et al. 2010. QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335. 
Catska V. 1993. Fruit tree replant problem and microbial antagonism in soil. Acta Horticulturae, 324, 23–33. 
Chaparro J M, Badri D V, Vivanco J M. 2014. Rhizosphere microbiome assemblage is affected by plant development. ISME Journal, 8, 790. 
Chen S, Qi G, Luo T, Zhang H, Jiang Q, Wang R, Zhao X. 2018. Continuous-cropping tobacco caused variance of chemical properties and structure of bacterial network in soils. Land Degradation & Development, 29, 4106–4120.
Chester L F, Charles R D, Carlton L P. 1996. Impact of herbicides applied annually for twenty-three years in a deciduous orchard. Weed Technology, 10, 587–591. 
Derrick K S, Timmer L W. 2000. Citrus blight and other diseases of recalcitrant etiology. Annual Review of Phytopathology, 38, 181. 
Dietrich P, Buchmann T, Cesarz S, Eisenhauer N, Roscher C. 2017. Fertilization, soil and plant community characteristics determine soil microbial activity in managed temperate grasslands. Plant and Soil, 419, 189–199. 
Erika M, Péter S, Otto S, David D, Nachtergaele F. 2006. World reference base for soil resources: 2006: A framework for international classification, correlation and communication. Food and Agriculture Organization of the United Nations (FAO), Rome, Italy.
Evtushenko L I, Takeuchi M. 2006. The family Microbacteriaceae. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K, Stackebrandt E, eds., The Prokaryotes. Volume 3: Archaea. Bacteria: Firmicutes, Actinomycetes. Springer, New York, NY. pp. 1020–1098. 
Guo Q, Yan L, Korpelainen H, Niinemets Ü, Li C. 2019. Plant–plant interactions and N fertilization shape soil bacterial and fungal communities. Soil Biology and Biochemistry, 128, 127–138. 
Gur A, Cohen Y. 1989. The peach replant problem - some causal agents. Soil Biology and Biochemistry, 21, 829–834.
Hoestra H. 1968. Replant Diseases of Apple in the Netherlands. Wageningen H. Veenman, The Kingdom of the Netherlands.
Kuske C R, Ticknor L O, Busch J D, Gehring C A, Whitham T G. 2003. The pinyon rhizosphere, plant stress, and herbivory affect the abundance of microbial decomposers in soils. Microbial Ecology, 45, 340–352.
Laurent P, Raaijmakers J.M, Philippe L, Putten W H V D. 2013. Going back to the roots: the microbial ecology of the rhizosphere. Nature Reviews Microbiology, 11, 789–799.
Li H N, Liu W X, Dai L, Wan F H, Cao Y Y. 2009. Invasive impacts of Ageratina adenophora (Asteraceae) on the changes of microbial community structure, enzyme activity and fertility in soil ecosystem. Scientia Agricultura Sinica, 42, 3964–3971. (in Chinese) 
Li W H, Liu Q Z 2019. Changes in fungal community and diversity in strawberry rhizosphere soil after 12 years in the greenhouse. Journal of Integrative Agriculture, 18, 677–687. 
Li W H, Liu Q Z, Chen P. 2018. Effect of long-term continuous cropping of strawberry on soil bacterial community structure and diversity. Journal of Integrative Agriculture, 17, 2570–2582. 
Li X Y, Liu Q Z, Wang Y Z, Sun H Y, Bai C Q, Lewis E. 2015. Different changes of soil nematode communities in replant and continuous-planting peach orchards and their indicative value for peach replant problem. Helminthologia, 3, 261–269. 
Lladó S, López-Mondéjar R, Baldrian P. 2017. Forest soil bacteria: Diversity, involvement in ecosystem processes, and response to global change. Microbiology and Molecular Biology Reviews, 81, e16–e63. 
Mahenthiralingam E, Urban T A, Goldberg J B. 2005. The multifarious, multireplicon Burkholderia cepacia complex. Nature Reviews Microbiology, 3, 144–156. 
Mai W, Abawi G. 1981. Controlling replant diseases of pome and stone fruits in Northeastern United States by preplant fumigation. Plant Disease, 11, 859–864.
Manici L M, Ciavatta C, Kelderer M, Erschbaumer G. 2003. Replant problems in South Tyrol: role of fungal pathogens and microbial population in conventional and organic apple orchards. Plant and Soil, 256, 315–324.
Mazzola M. 1998. Elucidation of the microbial complex having a causal role in the development of apple replant disease in Washington. Phytopathology, 88, 930–938. 
Mazzola M. 1999. Transformation of soil microbial community structure and rhizoctonia-suppressive potential in response to apple roots. Phytopathology, 89, 920–927.
Mazzola M, Funnell D L, Raaijmakers J M. 2004. Wheat cultivar-specific selection of 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas species from resident soil populations. Microbial Ecology, 48, 338–348. 
Pascual J, Blanco S, Ramos J L, Dillewijn P V. 2018. Responses of bulk and rhizosphere soil microbial communities to thermoclimatic changes in a Mediterranean ecosystem. Soil Biology and Biochemistry, 118, 130–144. 
Peterson A B, Hinman H. 1994. The economics of replanting apple orchards in Washington State. Acta Horticulturae, 363, 19–23. 
Potter D, Eriksson T, Evans R C, Oh S, Smedmark J E E, Morgan D R, Kerr M, Robertson K R, Arsenault M, Dickinson T A. 2007. Phylogeny and classification of Rosaceae. Plant Systematics & Evolution, 266, 5–43. 
Ruiz Palomino M, Lucas García J A, Ramos B, Gutierrez Mañero F J, Probanza A. 2005. Seasonal diversity changes in alder (Alnus glutinosa) culturable rhizobacterial communities throughout a phenological cycle. Applied Soil Ecology, 29, 215–224. 
Rumberger A, Marschner P. 2003. 2-Phenylethylisothiocyanate concentration and microbial community composition in the rhizosphere of canola. Soil Biology and Biochemistry, 35, 445–452. 
Rumberger A, Merwin I A, Thies J E. 2007. Microbial community development in the rhizosphere of apple trees at a replant disease site. Soil Biology and Biochemistry, 39, 1645–1654. 
Rutto K L, Mizutani F. 2006. Peach seedling growth in replant and non-replant soils after inoculation with arbuscular mycorrhizal fungi. Soil Biology and Biochemistry, 38, 2536–2542. 
Sarkar D. 2005. Physical and Chemical Methods in Soil Analysis. New Age International Publishers, India.
van Schoor L, Denman S, Cook N. 2009. Characterisation of apple replant disease under South African conditions and potential biological management strategies. Scientia Horticulturae, 2, 153–162. 
Stackebrandt E, Rainey F A, Ward-Rainey N L. 1997. Proposal for a new hierarchic classification system, Actinobacteria classis nov. International Journal of Systematic and Evolutionary Microbiology, 47, 479–491.
Stackebrandt E, Scheuner C, Göker M, Schumann P. 2014. The family Intrasporangiaceae. In: Rosenberg E, DeLong E F, Lory S, Stackebrandt E, Thompson F, eds., The Prokaryotes: Actinobacteria. Springer, Berlin, Heidelberg. pp. 397–424.
Tewoldemedhin Y T, Mazzola M, Labuschagne I, McLeod A. 2011. A multi-phasic approach reveals that apple replant disease is caused by multiple biological agents, with some agents acting synergistically. Soil Biology and Biochemistry, 43, 1917–1927.
Tournas V H. 2005. Spoilage of vegetable crops by bacteria and fungi and related health hazards. Critical Reviews in Microbiology, 31, 33–44. 
Traquair J A. 1984. Etiology and control of orchard replant problems: A review. Canadian Journal of Plant Pathology, 6, 54–62. 
Trujillo M E, Hong K, Genilloud O. 2014. The family micromonosporaceae. In: Rosenberg E, DeLong E F, Lory S, Stackebrandt E, Thompson F, eds., The Prokaryotes: Actinobacteria. Springer, Berlin, Heidelberg. pp. 499–569.
Utkhede R S, Sholberg P L, Smirle M J. 2001. Effects of chemical and biological treatments on growth and yield of apple trees planted in Phytophthora cactorum infected soil. Canadian Journal of Plant Pathology, 23, 163–167.
Wolters V. 2000. Invertebrate control of soil organic matter stability. Biology & Fertility of Soils, 31, 1–19. 
Woltz S S. 1978. Nonparasitic plant pathogens. Annual Review of Phytopathology, 16, 403–430.
Xu F, Cai T, Yang X, Sui W. 2017. Soil fungal community variation by large-scale reclamation in Sanjiang plain, China. Annals of Microbiology, 67, 679–689. 
Yabuuchi E, Yano I, Oyaizu H, Hashimoto Y, Ezaki T, Yamamoto H. 1990. Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov, Sphingomonas parapaucimobilis sp. nov, Sphingomonas yanoikuyae sp. nov, Sphingomonas adhaesiva sp. nov, Sphingomonas capsulata comb, nov, and two genospecies of the genus Sphingomonas. Microbiology and Immunology, 34, 99–119. 
Yakov K, Xingliang X. 2013. Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance. New Phytologist, 198, 656–669.
Yao S, Merwin I A, Abawi G S, Thies J E. 2006. Soil fumigation and compost amendment alter soil microbial community composition but do not improve tree growth or yield in an apple replant site. Soil Biology Biochemistry, 38, 587–599.