|
Abdelraheem A, Thyssen G N, Fang D D, Jenkins J N, McCarty J C, Wedegaertner T, Zhang J F. 2021. GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents. Molecular Genetics and Genomics, 296, 119–129.
Abro A A, Abbas M, Liu Q K, Jie Z, Xu Y C, Hou Y Q, Zhou Z L, Iqbal R, Liu F, Cai X Y. 2025. Genetic insights into cold tolerance in cotton: GWAS identified GhPRL gene responsible for cold tolerance in cotton at seedling stage. Industrial Crops and Products, 237, 122164.
Arslanova S K, Ernazarova Z A, Ernazarova D K, Turaev O S, Safiullina A K, Toshpulatov A K, Kholova M D, Azimova L A, Rafiyeva F U, Gapparov B M, Khalikov K K, Khidirov M T, Iskandarov A A, Kodirov D M, Turaev O Y, Maulyanov S A, Udall J A, Yu J Z, Kushanov F N. 2025. Development and characterization of synthetic allotetraploids between diploid species Gossypium herbaceum and Gossypium nelsonii for cotton genetic improvement. Plants, 14, 1620.
Bai Z T, Xie C, Yu J, Bai W Q, Pei S Z, Li Y X, Li Z J, Zhang F C, Fan J L, Yin F H. 2024. Effects of irrigation and nitrogen levels on yield and water-nitrogen-radiation use efficiency of drip-fertigated cotton in south Xinjiang of China. Field Crops Research, 308, 109280.
Barrow J, Davis D. 1974. Gl28-A new allele for pigment glands in cotton. Crop Science, 14, cropsci1974.0011183X001400020047x.
Cai C P, Zhu G Z, Zhang T Z, Guo W Z. 2017. High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis. BMC Genomics, 18, 1–14.
Cai X, Tang L Y, Wang H T, Zhang S J, Li X H, Liu C J, Zhang X Y, Zhang J H. 2025. Identification of the cysteine-rich transmembrane module CYSTM family in upland cotton and functional analysis of GhCYSTM5_A in cold and drought stresses. International Journal of Biological Macromolecules, 292, 139058.
Cao J F, Zhao B, Huang C C, Chen Z W, Zhao T, Liu H R, Hu G J, Shangguan X X, Shan C M, Wang L J, Zhang T Z, Wendel J F, Guan X Y, Chen X Y. 2020. The miR319-targeted GhTCP4 promotes the transition from cell elongation to wall thickening in cotton fiber. Molecular Plant, 13, 1063–1077.
Chang B Y, Zhao L H, Feng Z L, Wei F, Zhang Y L, Zhang Y H, Huo P, Cheng Y, Zhou J L, Feng H J. 2023. Galactosyltransferase GhRFS6 interacting with GhOPR9 involved in defense against Verticillium wilt in cotton. Plant Science, 328, 111582.
Chang X, He X, Li J Y, Liu Z P, Pi R Z, Luo X X, Wang R P, Hu X B, Lu S F, Zhang X L, Wang M J. 2024. High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres. Plant Communications, 5, 100722.
Chen L, Sun H, Wang F J, Yue D D, Shen X K, Sun W N, Zhang X L, Yang X Y. 2020. Genome-wide identification of MAPK cascade genes reveals the GhMAP3K14-GhMKK11-GhMPK31 pathway is involved in the drought response in cotton. Plant Molecular Biology, 103, 211–223.
Chen R, Zhang J, Li J, Chen J W, Dai F, Tian Y, Hu Y, Zhu Q H, Zhang T Z. 2025. Two duplicated GhMML3 genes coordinately control development of lint and fuzz fibers in cotton. Plant Communications, 6, 101281.
Chen Z J, Sreedasyam A, Ando A, Song Q X, De Santiago L M, Hulse-Kemp A M, Ding M Q, Ye W X, Kirkbride R C, Jenkins J, Plott C, Lovell J, Lin Y M, Vaughn R, Liu B, Simpson S, Scheffler B E, Wen L, Saski C A, Grover C E, et al. 2020. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics, 52, 525–533.
Cheng H L, Liu S, Zhang Y P, Zuo D Y, Wang Q L, Lv L M, Yang Y, Hao L Y, Zhang X, Zhang S, Song G L. 2026. Comparative single-cell transcriptomic map reveals divergence in leaves between two cotton species at cell type resolution. Journal of Advanced Research, 79, 121–136.
Cheng Y, Huang C J, Hu Y, Jin S K, Zhang X M, Si Z F, Zhao T, Chen J W, Fang L, Dai F, Yang W F, Wang P Z, Mei G F, Guan X Y, Zhang T Z. 2024. Gossypium purpurascens genome provides insight into the origin and domestication of upland cotton. Journal of Advanced Research, 56, 15–29.
Crossa J, Montesinos-Lopez O A, Costa-Neto G, Vitale P, Martini J W R, Runcie D, Fritsche-Neto R, Montesinos-Lopez A, Pérez-Rodríguez P, Gerard G, Dreisigacker S, Crespo-Herrera L, Saint Pierre C, Lillemo M, Cuevas J, Bentley A, Ortiz R. 2025. Machine learning algorithms translate big data into predictive breeding accuracy. Trends in Plant Science, 30, 167–184.
Dai J L, Cui Z P, Zhang Y J, Zhan L J, Nie J J, Cui J Q, Zhang D M, Xu S Z, Chen B, Dong H Z. 2024. Enhancing stand establishment and yield formation of cotton with multiple drip irrigation during emergence in saline fields of Southern Xinjiang. Field Crops Research, 315, 109482.
Desta Z, Ortiz R. 2014. Genomic selection: genome-wide prediction in plant improvement. Trends in Plant Science, 19, 592–601.
DeVito R, Gymrek M. 2025. Modeling nonlinear and interaction effects of spatiotemporal and other non-genetic factors improves phenotypic prediction for complex traits. medRxiv, 2025.11.26.25341090. https://doi.org/10.1101/2025.11.26.25341090.
Ding Y H, Ma Y Z, Liu N A, Xu J, Hu Q, Li Y Y, Wu Y L, Xie S, Zhu L F, Min L, Zhang X L. 2017. microRNAs involved in auxin signalling modulate male sterility under high-temperature stress in cotton (Gossypium hirsutum). The Plant Journal, 91, 977–994.
Dong H Z, Zhang Y J, Dai J L, Chen C B, Nie J J, Cui Z P, Li C D, Zhang W F, Wan S M, Li Z H, Zhang D M, Xu S Z, Zhan L J, Sun L, Chi B J, Zhao H J, Zou J Y, Du M W, Zhang Y L, Li W J. 2024. Theory and Practice of Concentrated Maturity Cultivation in Cotton. China Agriculture Press, Beijing. (in Chinese).
Dong H Z, Hua Z Q, Wang C Y, Zhang Y J. 2026. Hypocotyl–apical hook coordination determines cotton emergence under low-temperature and salinity stress. The Crop Journal, 14, 1097–110.
Du X M, Huang G, He S P, Yang Z E, Sun G F, Ma X F, Li N, Zhang X Y, Sun J L, Liu M, Jia Y H, Pan Z E, Gong W F, Liu Z H, Zhu H Q, Ma L, Liu F Y, Yang D G, Wang F, Fan W, et al. 2018. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits. Nature Genetics, 50, 796–802.
Duan Y J, Shang X G, Wu R X, Yu Y J, He Q F, Tian R P, Li W X, Zhu G Z, Guo W Z. 2025. The transcription factor GhMYB4 represses lipid transfer and sucrose transporter genes and inhibits fiber cell elongation in cotton. Plant Physiology, 197, doi: 10.1093/plphys/kiae637.
Egan L M, Conaty W C, Stiller W N. 2022. Core collections: Is there any value for cotton breeding? Frontiers in Plant Science, 13, 895155.
Fang L, Wang Q, Hu Y, Jia Y H, Chen J D, Liu B L, Zhang Z Y, Guan X Y, Chen S Q, Zhou B L, Mei G F, Sun J L, Pan Z E, He S P, Xiao S H, Shi W J, Gong W F, Liu J G, Ma J, Cai C P, et al. 2017. Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits. Nature Genetics, 49, 1089–1098.
Fang L, Zhao T, Hu Y, Si Z F, Zhu X F, Han Z G, Liu G Z, Wang S, Ju L Z, Guo M L, Mei H, Wang L Y, Qi B W, Wang H, Guan X Y, Zhang T Z. 2021. Divergent improvement of two cultivated allotetraploid cotton species. Plant Biotechnology Journal, 19, 1325–1336.
Feng H J, Li C, Zhou J L, Yuan Y, Feng Z L, Shi Y Q, Zhao L H, Zhang Y L, Wei F, Zhu H Q. 2021. A cotton WAKL protein interacted with a DnaJ protein and was involved in defense against Verticillium dahliae. International Journal of Biological Macromolecules, 167, 633–643.
Fu C, Wang N, Meng Q Y, Xu Z Y, Le Y, Zhang X L, Wei Y Y, Peng R H, Shen C, Lin Z X. 2025. Gossypium latifolium genome reveals the genetic basis of domestication of upland cotton from semi-wild races to cultivars. The Crop Journal, 13, 929–941.
Gao F, Zhang B S, Zhao J H, Huang J F, Jia P S, Wang S, Zhang J, Zhou J M, Guo H S. 2019. Deacetylation of chitin oligomers increases virulence in soil-borne fungal pathogens. Nature Plants, 5, 1167–1176.
Gao F K, Wang L, Xie Y C, Su J S, Ning H F, Han Q S, Kanneh J E, Liu H. 2024. Optimizing canopy structure through equal row spacing and appropriate irrigation enhances machine-harvested seed cotton yield and quality. Industrial Crops and Products, 216, 118799.
Gao W, Xu F C, Long L, Li Y, Zhang J L, Chong L, Botella J R, Song C P. 2020. The gland localized CGP1 controls gland pigmentation and gossypol accumulation in cotton. Plant Biotechnology Journal, 18, 1573–1584.
Gao W H, Zhu X F, Ding L Y, Xu B Y, Gao Y, Cheng Y, Dai F, Liu B L, Si Z F, Fang L, Guan X Y, Zhu S J, Zhang T Z, Hu Y. 2022. Development of the engineered “glanded plant and glandless seed” cotton. Food Chemistry: Molecular Sciences, 5, 100130.
Gapare W, Liu S M, Conaty W, Zhu Q H, Gillespie V, Llewellyn D, Stiller W, Wilson I. 2018. Historical datasets support genomic selection models for the prediction of cotton fiber quality phenotypes across multiple environments. G3-Genes Genomes Genetics, 8, 1721–1732.
Ge X Y, Xu J T, Yang Z E, Yang X F, Wang Y, Chen Y L, Wang P, Li F G. 2023. Efficient genotype-independent cotton genetic transformation and genome editing. Journal of Integrative Plant Biology, 65, 907–917.
Guo C P, Pi R Z, Wu Y L, You J Q, Qi Z Y, Liu Z P, Chang X Y, Ding S G, Zhang Q, Han P, Zhang X L, You C Y, Wang M J, Nie X H. 2025. GWAS and eQTL analyses reveal genetic components influencing the key fiber yield trait lint percentage in upland cotton. The Plant Journal, 121, e70036.
Guo Z F, Wang H W, Tao J J, Ren Y H, Xu C, Wu K S, Zou C, Zhang J N, Xu Y B. 2019. Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize. Molecular Breeding, 39, 1–12.
Guo Z F, Yang Q, Huang F F, Zheng H J, Sang Z Q, Xu Y F, Zhang C, Wu K S, Tao J J, Prasanna B M, Olsen M S, Wang Y B, Zhang J A, Xu Y B. 2021. Development of high-resolution multiple-SNP arrays for genetic analyses and molecular breeding through genotyping by target sequencing and liquid chip. Plant Communications, 2, 100230.
Han Z G, Chen H, Cao Y W, He L, Si Z F, Hu Y, Lin H, Ning X Z, Li J L, Ma Q, Liu F J, Zang Y H, Zhao T, Fang L, Zhu X F, Zhang T Z. 2022. Genomic insights into genetic improvement of upland cotton in the world’s largest growing region. Industrial Crops and Products, 183, 114929.
He S P, Sun G F, Geng X L, Gong W F, Dai P H, Jia Y H, Shi W J, Pan Z E, Wang J D, Wang L Y, Xiao S H, Chen B J, Cui S F, You C Y, Xie Z M, Wang F, Sun J, Fu G Y, Peng Z, Hu D W, et al. 2021. The genomic basis of geographic differentiation and fiber improvement in cultivated cotton. Nature Genetics, 53, 916–924.
Hong Y, Li D R, Wang M, Jiang H N, Luo L K, Wu Y P, Liu C, Xie T J, Zhang Q, Jahangir Z. 2022. Cotton cultivated area extraction based on multi-feature combination and CSSDI under spatial constraint. Remote Sensing, 14, 1392.
Hou M J, Kong H, Xie Z S, Zhu J B, Zhu X X. 2025. Genome-wide identification of the cotton ANK gene family and functional study of GhANK169 in response to heat stress. BMC Plant Biology, 25, 705.
Hu G, Grover C E, Jareczek J, Yuan D, Dong Y, Miller E, Conover J L, Wendel, J F. 2021. Evolution and Diversity of the Cotton Genome. In: Rahman M U, Zafar Y, Zhang T, eds., Cotton Precision Breeding. Springer International Publishing.
Hu G J, Wang Z Y, Tian Z Z, Wang K, Ji G X, Wang X X, Zhang X L, Yang Z N, Liu X, Niu R Y, Zhu D, Zhang Y Z, Duan L, Ma X Y, Xiong X P, Kong J L, Zhao X J, Zhang Y, Zhao J J, He S P, et al. 2025. A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation. Nature Genetics, 57, 1031–1043.
Hu H Y, He X, Tu L L, Zhu L F, Zhu S T, Ge Z H, Zhang X L. 2016. GhJAZ2 negatively regulates cotton fiber initiation by interacting with the R2R3-MYB transcription factor GhMYB25-like. The Plant Journal, 88, 921–935.
Hu Q, Xiao S H, Wang X R, Ao C W, Zhang X L, Zhu L F. 2021. GhWRKY1-like enhances cotton resistance to Verticillium dahliae via an increase in defense-induced lignification and S monolignol content. Plant Science, 305, 110833.
Hu Y, Chen J D, Fang L, Zhang Z Y, Ma W, Niu Y C, Ju L Z, Deng J Q, Zhao T, Lian J M, Baruch K, Fang D, Liu X, Ruan Y L, Rahman M U, Han J L, Wang K, Wang Q, Wu H T, Mei G F, et al. 2019. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton. Nature Genetics, 51, 739–748.
Hu Y, Han J L, Jin S K, Han Z G, Si Z F, Yan S Y, Xuan L S, Yu G R, Guan X Y, Fang L, Wang K, Zhang T Z. 2025. Post-polyploidization centromere evolution in cotton. Nature Genetics, 57, 1021–1030.
Huang G, Bao Z G, Feng L, Zhai J X, Wendel J F, Cao X F, Zhu Y X. 2024. A telomere-to-telomere cotton genome assembly reveals centromere evolution and a mutator transposon-linked module regulating embryo development. Nature Genetics, 56, 1953–1963.
Huang G, Wu Z G, Percy R G, Bai M Z, Li Y, Frelichowski J E, Hu J, Wang K, Yu J Z, Zhu Y X. 2020. Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. Nature Genetics, 52, 516–524.
Huang J F, Chen F, Guo Y J, Gan X L, Yang M M, Zeng W, Persson S, Li J, Xu W L. 2021. GhMYB7 promotes secondary wall cellulose deposition in cotton fibres by regulating GhCesA gene expression through three distinct cis-elements. New Phytologist, 232, 1718–1737.
Huang Y F, Qi Z Y, Li J Y, You J Q, Zhang X L, Wang M J. 2023. Genetic interrogation of phenotypic plasticity informs genome-enabled breeding in cotton. Journal of Genetics and Genomics, 50, 971–982.
Hui F J, Tang X, Li B, Alariqi M, Xu Z P, Meng Q Y, Hu Y X, Wang G Y, Zhang Y, Zhang X L, Jin S X. 2024. Robust CRISPR/Mb2Cas12a genome editing tools in cotton plants. iMeta, 3, e209.
Hulse-Kemp A M, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang D D, Frelichowski J, Giband M, Hague S, Hinze L L, Kochan K J, Riggs P K, Scheffler J A, Udall J A, Ulloa M, Wang S S, Zhu Q H, Bag S K, Bhardwaj A, Burke J J, et al. 2015. Development of a 63K SNP array for cotton and high-density mapping of intraspecific and interspecific populations of Gossypium spp. G3-Genes Genomes Genetics, 5, 1187–1209.
ISAAA. 2024. Global Status of Commercialized Biotech/GM Crops: 2024. ISAAA Brief No. 57. ISAAA, Ithaca, NY.
Janga M R, Pandeya D, Campbell L M, Konganti K, Villafuerte S T, Puckhaber L, Pepper A, Stipanovic R D, Scheffler J A, Rathore K S. 2019. Genes regulating gland development in the cotton plant. Plant Biotechnology Journal, 17, 1142–1153.
Jin S K, Han Z G, Hu Y, Si Z F, Dai F, He L, Cheng Y, Li Y Q, Zhao T, Fang L, Zhang T Z. 2023. Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons. Molecular Plant, 16, 678–693.
Kamilaris A, Prenafeta-Boldú F. 2018. Deep learning in agriculture: A survey. Computers and Electronics in Agriculture, 147, 70–90.
Khan A H, Ma Y Z, Wu Y L, Akbar A, Shaban M, Ullah A, Deng J W, Khan A S, Chi H B, Zhu L F, Zhang X L, Min L. 2023. High-temperature stress suppresses allene oxide cyclase 2 and causes male sterility in cotton by disrupting jasmonic acid signaling. The Crop Journal, 11, 33–45.
Kohel R, Lee J. 1984. Genetic analysis of Egyptian glandless cotton. Crop Science, 24, cropsci1984.0011183X002400060027x.
Kong X Q, Zhou J Y, Li X, Liu C M, Chu J F, Zhang H, Dong H Z. 2024. HLS1 promotes apical hook formation by regulating YUCCA8 and GH3.17 expression differently in the inner and outer side of the hook in cotton. Physiologia Plantarum, 176, e14148.
Koondhar M A, Qiu L L, Liu X Y, Abbassi F, Koondhar M A, Ge H. 2018. Effects of market price, cultivating area and price regulation on cotton production in China. African Journal of Agricultural Research, 13, 858–865.
Lee J. 1962. Genetical studies concerning distribution of pigment glands in cotyledons and leaves of Upland cotton. Genetics, 47, 131–142.
Li B Q, Zhang M M, Sun W A, Yue D D, Ma Y Z, Zhang B Y, Duan L F, Wang M J, Lindsey K, Nie X H, Zhang X L, Yang X Y. 2023. N6-methyladenosine RNA modification regulates cotton drought response in a Ca2+ and ABA-dependent manner. Plant Biotechnology Journal, 21, 1270–1285.
Li F G, Fan G Y, Lu C R, Xiao G H, Zou C S, Kohel R J, Ma Z Y, Shang H H, Ma X F, Wu J Y, Liang X M, Huang G, Percy R G, Liu K, Yang W H, Chen W B, Du X M, Shi C C, Yuan Y L, Ye W W, et al. 2015. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM–1) provides insights into genome evolution. Nature Biotechnology, 33, 524–530.
Li F G, Fan G Y, Wang K B, Sun F M, Yuan Y L, Song G L, Li Q, Ma Z Y, Lu C R, Zou C S, Chen W B, Liang X M, Shang H H, Liu W Q, Shi C C, Xiao G H, Gou C Y, Ye W W, Xu X, Zhang X Y, et al. 2014. Genome sequence of the cultivated cotton Gossypium arboreum. Nature Genetics, 46, 567–572.
Li J, Wang Q, Zhao H, Wang Y, Chen Y, Zhou H, Duan H, Liu L, Li F, Ge X. 2026. GhPsbO breaks the growth-immunity trade-off by simultaneously promoting growth and defence in cotton. The Plant Cell, koag190.
Li J Y, Liu Z P, You C Y, Qi Z Y, You J Q, Grover C E, Long Y X, Huang X H, Lu S F, Wang Y J, Zhang S N, Wang Y W, Bai R Z, Zhang M K, Jin S X, Nie X H, Wendel J F, Zhang X L, Wang M J. 2024. Convergence and divergence of diploid and tetraploid cotton genomes. Nature Genetics, 56, 2562–2573.
Li J Y, Yuan D J, Wang P C, Wang Q Q, Sun M L, Liu Z P, Si H, Xu Z P, Ma Y Z, Zhang B Y, Pei L L, Tu L L, Zhu L F, Chen L L, Lindsey K, Zhang X L, Jin S X, Wang M J. 2021. Cotton pan-genome retrieves the lost sequences and genes during domestication and selection. Genome Biology, 22, 1–26.
Li S T, Chen H, Hou Z, Li Y, Yang C L, Wang D J, Song C P. 2020. Screening of abiotic stress-responsive cotton genes using a cotton full-length cDNA overexpressing Arabidopsis library. Journal of Integrative Plant Biology, 62, 998–1016.
Li Y B, Han L B, Wang H Y, Zhang J, Sun S T, Feng D Q, Yang C L, Sun Y D, Zhong N Q, Xia G X. 2016. The thioredoxin GbNRX1 plays a crucial role in homeostasis of apoplastic reactive oxygen species in response to Verticillium dahliae infection in cotton. Plant Physiology, 170, 2392–2406.
Li Y L, Li Y Y, Su Q, Wu Y L, Zhang R, Li Y W, Ma Y Z, Ma H H, Guo X P, Zhu L F, Min L, Zhang X L. 2022. High temperature induces male sterility via MYB66-MYB4-Casein kinase I signaling in cotton. Plant Physiology, 189, 2091–2109.
Li Y Q, Si Z F, Wang G P, Shi Z L, Chen J W, Qi G A, Jin S K, Han Z G, Gao W H, Tian Y, Mao Y, Mao Y, Fang L, Hu Y, Chen H, Zhu X F, Zhang T Z. 2023. Genomic insights into the genetic basis of cotton breeding in China. Molecular Plant, 16, 662–677.
Li Z H, Wang P C, You C Y, Yu J W, Zhang X N, Yan F L, Ye Z X, Shen C, Li B Q, Guo K, Liu N, Thyssen G N, Fang D D, Lindsey K, Zhang X L, Wang M J, Tu L L. 2020. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. New Phytologist, 226, 1738–1752.
Li Z T, Liu S M, Conaty W, Zhu Q H, Moncuquet P, Stiller W, Wilson I. 2022. Genomic prediction of cotton fibre quality and yield traits using Bayesian regression methods. Heredity, 129, 103–112.
Liang C Z, Meng Z H, Meng Z G, Malik W, Yan R, Lwin K M, Lin F Z, Wang Y, Sun G Q, Zhou T, Zhu T, L J Y, Jin S X, Guo S D, Zhang R. 2016. GhABF2, a bZIP transcription factor, confers drought and salinity tolerance in cotton (Gossypium hirsutum L.). Scientific Reports, 6, 35040.
Lin J L, Chen L X, Wu W K, Guo X X, Yu C H, Xu M, Nie G B, Dun J L, Li Y, Xu B F, Wang L J, Chen X Y, Gao W, Huang J Q. 2023. Single-cell RNA sequencing reveals a hierarchical transcriptional regulatory network of terpenoid biosynthesis in cotton secretory glandular cells. Molecular Plant, 16, 1990–2003.
Liu J J, Liu J N, Wang H, Khan A, Xu Y C, Hou Y Q, Wang Y H, Zhou Z L, Zheng J, Liu F, Cai X Y. 2023. Genome wide identification of GDSL gene family explores a novel GhirGDSL 26 gene enhancing drought stress tolerance in cotton. BMC Plant Biology, 23, 14.
Liu J N, Mehari T G, Xu Y C, Umer M J, Hou Y Q, Wang Y H, Peng R H, Wang K B, Cai X Y, Zhou Z L, Liu F. 2021. GhGLK1 a key candidate gene from GARP family enhances cold and drought stress tolerance in cotton. Frontiers in Plant Science, 12, 759312.
Liu Q, Chen Y, Chen Y, Wang Y Y, Chen J J, Zhang T Z, Zhou B L. 2015. A new synthetic allotetraploid (A1A1G2G2) between Gossypium herbaceum and G. australe: Bridging for simultaneously transferring favorable genes from these two diploid species into upland cotton. PLoS ONE, 10, e0123209.
Liu S, Zuo D Y, Cheng H L, He M, Wang Q L, Lv L M, Zhang Y P, Ashraf J, Liu J, Song G L. 2023. Cotton pedigree genome reveals restriction of cultivar-driven strategy in cotton breeding. Genome Biology, 24, 282.
Liu S J, Xiang M J, Wang X T, Li J Q, Cheng X R, Li H Z, Singh R P, Bhavani S, Huang S, Zheng W J, Li C L, Yuan F P, Wu J H, Han D J, Kang Z S, Zeng Q D. 2025. Development and application of the GenoBaits WheatSNP16K array to accelerate wheat genetic research and breeding. Plant Communications, 6, 101138.
Liu S M, Zhang X J, Xiao S H, Ma J, Shi W J, Qin T, Xi H, Nie X H, You C Y, Xu Z, Wang T Y, Wang Y J, Zhang Z N, Li J Y, Kong J, Aierxi A, Yu Y, Lindsey K, Klosterman S J, Zhang X L, et al. 2021. A single-nucleotide mutation in a GLUTAMATE RECEPTOR-LIKE gene confers resistance to Fusarium wilt in Gossypium hirsutum. Advanced Science, 8, 2002723.
Liu X, Zhao B, Zheng H J, Hu Y, Lu G, Yang C Q, Chen J D, Chen J J, Chen D Y, Zhang L, Zhou Y, Wang L J, Guo W Z, Bai Y L, Ruan J X, Shangguan X X, Mao Y B, Shan C M, Jiang J P, Zhu Y Q, et al. 2015. Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites. Scientific Reports, 5, 14139–14152.
Lu H Q, Dai J L, Li W J, Tang W, Zhang D M, Eneji A E, Dong H Z. 2017. Yield and economic benefits of late planted short-season cotton versus full-season cotton relayed with garlic. Field Crops Research, 200, 80–87.
Luo Z, Kong X Q, Zhang Y J, Li W J, Zhang D M, Dai J L, Fang S, Chu J F, Dong H Z. 2019. Leaf-derived jasmonate mediates water uptake from hydrated cotton roots under partial root-zone irrigation. Plant Physiology, 180, 1660–1676.
Luo Z, Liu H, Li W P, Zhao Q, Dai J L, Tian L W, Dong H Z. 2018. Effects of reduced nitrogen rate on cotton yield and nitrogen use efficiency as mediated by application mode or plant density. Field Crops Research, 218, 150–157.
Ma A F, Zhang D P, Wang G X, Wang K, Li Z, Gao Y H, Li H C, Bian C, Cheng J K, Han Y A, Yang S H, Gong Z Z, Qi J S. 2021. Verticillium dahliae effector VDAL protects MYB6 from degradation by interacting with PUB25 and PUB26 E3 ligases to enhance Verticillium wilt resistance. The Plant Cell, 33, 3675–3699.
Ma D, Hu Y, Yang C Q, Liu B L, Fang L, Wan Q, Liang W H, Mei G F, Wang L J, Wang H P, Ding L Y, Dong C G, Pan M Q, Chen J D, Wang S, Chen S Q, Cai C P, Zhu X F, Guan X Y, Zhou B L, et al. 2016. Genetic basis for glandular trichome formation in cotton. Nature Communications, 7, 10456.
Ma J H, Jiang F, Yu Y, Zhou H D, Zhan J J, Li J N, Chen Y L, Wang Y, Duan H Y, Ge X Y, Xu Z Z, Zhao H, Liu L S. 2025. Verticillium dahliae effector Vd06254 disrupts cotton defence response by interfering with GhMYC3-GhCCD8-mediated hormonal crosstalk between jasmonic acid and strigolactones. Plant Biotechnology Journal, 23, 2755–2768.
Ma J Q, Ding Y, Zhang J H, Fan K, Bai Y G, Cui B F, Hao X P, Fu G T, Ding B X. 2025. Exploring the response relationship between crop rooting, seedling emergence and soil water, heat and salt environmental factors in dry sowing wet emergent cotton fields. Industrial Crops and Products, 231, 121201.
Ma L H, Zhang T, Zhu Q H, Zhang X Y, Sun J, Liu F. 2024. HSP70 and APX1 play important roles in cotton male fertility by mediating ROS homeostasis. International Journal of Biological Macromolecules, 278, 134856.
Ma Y Z, Min L, Wang J D, Li Y Y, Wu Y L, Hu Q, Ding Y H, Wang M J, Liang Y J, Gong Z L, Xie S, Su X J, Wang C Z, Zhao Y L, Fang Q D, Li Y L, Chi H B, Chen M, Khan A H, Lindsey K, et al. 2021. A combination of genome-wide and transcriptome-wide association studies reveals genetic elements leading to male sterility during high temperature stress in cotton. New Phytologist, 231, 165–181.
Ma Z Y, He S P, Wang X F, Sun J L, Zhang Y, Zhang G Y, Wu L Q, Li Z K, Liu Z H, Sun G F, Yan Y Y, Jia Y H, Yang J, Pan Z E, Gu Q S, Li X Y, Sun Z W, Dai P H, Liu Z W, Gong W F, et al. 2018. Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield. Nature Genetics, 50, 803–813.
Ma Z Y, Zhang Y, Wu L Q, Zhang G Y, Sun Z W, Li Z K, Jiang Y F, Ke H F, Chen B, Liu Z W, Gu Q S, Wang Z C, Wang G N, Yang J, Wu J H, Yan Y Y, Meng C S, Li L H, Li X X, Mo S J, et al. 2021. High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement. Nature Genetics, 53, 1385–1391.
Mcmichael S C. 1954. Glandless boll in upland cotton and its use in the study of natural crossing. Agronomy Journal, 46, 527–528.
Mcmichael S C. 1960. Combined effects of glandless genes gl2 and gl3 on pigment glands in cotton plant. Agronomy Journal, 52, 385–386.
Mehboob-ur-Rahman, Zafar Y. 2018. Introductory chapter: Updates on achieving sustainable cotton production. In: Mehboob-ur-Rahman, Zafar Y, eds. Past, Present and Future Trends in Cotton Breeding. IntechOpen, London, UK. pp. 1–10.
Meng Q Y, Xie P H, Xu Z P, Tang J W, Hui L Y, Gu J Q, Gu X X, Jiang S H, Rong Y X, Zhang J, Udall J A, Grover C E, Zheng K, Chen Q J, Kong J, Wang M J, Nie X H, Lin Z X, Jin S X, Wendel J F, et al. 2025. Pangenome analysis reveals yield- and fiber-related diversity and interspecific gene flow in Gossypium barbadense L. Nature Communications, 16, 4995.
Mi X Y, Li W X, Chen C, Xu H J, Wang G L, Jin X X, Zhang D Y, Guo W Z. 2024. GhMPK9-GhRAF39_1-GhWRKY40a regulates the GhERF1b- and GhABF2-mediated pathways to increase cotton disease resistance. Advanced Science, 11, 2404400.
Miravalle R. 1962. Action of the genes controlling the character glandless seed in cotton. Crop Science, 2, cropsci1962.0011183X000200050027x.
Mo H J, Sun Y X, Zhu X L, Wang X F, Zhang Y, Yang J, Yan G J, Ma Z Y. 2016. Cotton S-adenosylmethionine decarboxylase-mediated spermine biosynthesis is required for salicylic acid-and leucine-correlated signaling in the defense response to Verticillium dahliae. Planta, 243, 1023–1039.
Montes R A C, Ulloa M, Biniashvili T, Zackay A, Kfir N, Lopez-Arredondo D, Herrera-Estrella L. 2023. Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes. BMC Genomics, 24, 11.
Mou Q, Zhang J, Si Z F, Jin S K, Zhang W Y, Zhang T Z. 2026. Transgenic Lepidopteran-pests-resistant and herbicide-tolerant cotton through transfer of Cry1Ab-vip3Aa and Cp4-epsps+bar genes. Plant Biotechnology Journal, 24, 4102–4104.
Murray J. 1965. A new locus for glanded stem in tetraploid cotton. Journal of Heredity, 56, 42–44.
National Bureau of Statistics of China. 2023. China Statistical Yearbook 2023. China Statistics Press. (in Chinese)
Nie J, Dai J, Du M, Zhang Y, Tian X, Li Z, Dong H. 2021. New developments of modern cotton cultivation theory and technology in China: concentrated maturity cultivation. Scientia Agricultura Sinica, 54, 4286–4298. (in Chinese)
Ning W, Arick M A II, Udall J A, Hsu C Y, Abdala-Roberts L, Solís-Rodríguez U, Briones-May Y, Magbanua Z V, Pechanova O, Bustos-Segura C, Clancy M V, Díaz-Cruz S, Garnica-Cabrera A, Mamin M, Yu J Z, Turlings T C J, Hu G, Peterson D G, Grover C E, Wendel J F. 2026. Genomic diversity and the domestication history of cotton (Gossypium hirsutum). Proceedings of the National Academy of Sciences of the United States of America, 123, e2607107123.
Paterson A H, Wendel J F, Gundlach H, Guo H, Jenkins J, Jin D C, Llewellyn D, Showmaker K C, Shu S Q, Udall J, Yoo M J, Byers R, Chen W, Doron-Faigenboim A, Duke M V, Gong L, Grimwood J, Grover C, Grupp K, Hu G J, et al. 2012. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 492, 423–427.
Pathak D, Rathore P, Kaur H, Singh B, Kumar H, Ali A, Punia S, Sekhon P S, Singh K. 2024. Introgression and mapping of cotton leaf curl disease (CLCuD) resistance from wild Gossypium armourianum Kearney into upland cotton (G. hirsutum L.). Plant Disease, 109, 554–557.
Pei Y K, Zhu Y T, Jia Y J, Ge X Y, Li X C, Li F G, Hou Y X. 2020. Molecular evidence for the involvement of cotton GhGLP2, in enhanced resistance to Verticillium and Fusarium Wilts and oxidative stress. Scientific Reports, 10, 12510.
Peng R H, Xu Y C, Tian S L, Unver T, Liu Z, Zhou Z L, Cai X Y, Wang K B, Wei Y Y, Liu Y L, Wang H, Hu G J, Zhang Z R, Grover C E, Hou Y Q, Wang Y H, Li P T, Wang T, Lu Q W, Wang Y Y, et al. 2022. Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons. Proceedings of the National Academy of Sciences of the United States of America, 119, e2208496119.
Qi G, Li Y Q, Zhang W Y, Han Z G, Chen J W, Zhang Z Q, Xuan L S, Chen R, Fang L, Hu Y, Zhang T Z. 2025. Reveal genomic insights into cotton domestication and improvement using gene level functional haplotype-based GWAS. Nature Communications, 16, 4734.
Qiao L, Tan H Z, Ye Z X, Jin S X, Zhang X L, Tu L L. 2026. CRISPR/Cas9-mediated specific knockout of GhCesA4/7/8 improves cotton fibre quality. Plant Biotechnology Journal, 24, 2312–2314.
Qin J, Wang K, Sun L, Xing H, Wang S, Li L, Chen S, Guo H S, Zhang J. 2018. The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity. eLife, 7, e34902.
Qin Y M, Hu C Y, Pang Y, Kastaniotis A J, Hiltunen J K, Zhu Y X. 2007. Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. The Plant Cell, 19, 3692–3704.
Qiu P, Li J Y, Zhang L, Chen K, Shao J M, Zheng B X, Yuan H, Qi J, Yue L, Hu Q, Ming Y Q, Liu S M, Long L, Gu J J, Zhang X L, Lindsey K, Gao W, Wu H H, Zhu L F. 2023. Polyethyleneimine-coated MXene quantum dots improve cotton tolerance to Verticillium dahliae by maintaining ROS homeostasis. Nature Communications, 14, 7392.
Shan C M, Shangguan X X, Zhao B, Zhang X F, Chao L M, Yang C Q, Wang L J, Zhu H Y, Zeng Y D, Guo W Z, Zhou B L, Hu G J, Guan X Y, Chen Z J, Wendel J F, Zhang T Z, Chen X Y. 2014. Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3. Nature Communications, 5, 5519.
Shao L, Jin S K, Jiang H J, Pan T Y, Rui Z S, Shi X W, Zhao T, Si Z F, Guan X Y, Hu Y, Zhang T Z, Fang L. 2025. Structural variation and 3D genome-driven DNA/RNA methylation divergence contributing to cotton fiber domestication. Advanced Science, 13, doi: 10.1002/advs.202514381.
Sheri V, Mohan H, Jogam P, Alok A, Rohela G K, Zhang B H. 2025. CRISPR/Cas genome editing for cotton precision breeding: mechanisms, advances, and prospects. Journal of Cotton Research, 8, doi: 10.1186/s42397–024–00206-w.024–00206-w.
Shi F, Li N N, Khan A, Lin H R, Tian Y, Shi X J, Li J H, Tian L W, Luo H H. 2022. DPC can inhibit cotton apical dominance and increase seed yield by affecting apical part structure and hormone content. Field Crops Research, 282, 108509.
Shim J, Bandillo N B, Angeles-Shim R B. 2021. Finding needles in a haystack: Using Geo-references to enhance the selection and utilization of landraces in breeding for climate-resilient cultivars of upland cotton (Gossypium hirsutum L.). Plants, 10, doi: 10.3390/plants10071300.
Shim J, Mangat P, Angeles-Shim R. 2018. Natural variation in wild Gossypium species as a tool to broaden the genetic base of cultivated cotton. Journal of Plant Science and Current Research, 1–9.
Si Z F, Jin S K, Li J Y, Han Z G, Li Y Q, Wu X, Ge Y X, Fang L, Zhang T Z, Hu Y. 2022. The design, validation, and utility of the “ZJU CottonSNP40K” liquid chip through genotyping by target sequencing. Industrial Crops and Products, 188, 115629–115636.
Song Q W, Han S, Hu S, Xu Y Y, Zuo K J. 2024. The Verticillium dahliae effector VdPhb1 promotes pathogenicity in cotton and interacts with the immune protein GhMc4. Plant and Cell Physiology, 65, 1173–1183.
Sreedasyam A, Lovell J T, Mamidi S, Khanal S, Jenkins J W, Plott C, Bryan K B, Li Z G, Shu S Q, Carlson J, Goodstein D, et al. 2024. Genome resources for three modern cotton lines guide future breeding efforts. Nature Plants, 10, doi: 10.1038/s41477–024–01713-z.
Su Y, Guo A H, Huang Y, Wang Y M, Hua J P. 2020. GhCIPK6a increases salt tolerance in transgenic upland cotton by involving in ROS scavenging and MAPK signaling pathways. BMC Plant Biology, 20, 421.
Sun J L, Li S N, Guo H J, Hou Z A. 2021. Ion homeostasis and Na+ transport-related gene expression in two cotton (Gossypium hirsutum L.) varieties under saline, alkaline and saline-alkaline stresses. PLoS One, 16, e0256000.
Sun W A, Xia L J, Deng J W, Sun S M, Yue D D, You J Q, Wang M J, Jin S X, Zhu L F, Lindsey K, Zhang X L, Yang X Y. 2024. Evolution and subfunctionalization of CIPK6 homologous genes in regulating cotton drought resistance. Nature Communications, 15, 5733.
Sun W J, Gao Z Y, Wang J, Huang Y Q, Chen Y, Li J F, Lv M L, Wang J, Luo M, Zuo K J. 2019. Cotton fiber elongation requires the transcription factor GhMYB212 to regulate sucrose transportation into expanding fibers. New Phytologist, 222, 864–881.
Sun Y, Han Y F, Liu B, Jiang M, Sheng K, Li H Z, Yang P, Zhu Q H, Sun J, Chen J H, Zhu S J, Zhao T L. 2024. GoPGS regulates cotton pigment gland size and contributes to biotic stress tolerance through jasmonic acid pathways. New Phytologist, 243, 839–845.
Sun Y, Han Y F, Sheng K, Yang P, Cao Y F, Li H Z, Zhu Q H, Chen J H, Zhu S J, Zhao T L. 2023. Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of pigment glands in Gossypium bickii. Molecular Plant, 16, 694–708.
Tang S, Guo R, Wei J, Meng J, Wei S, Yang W, Zhou Z. 2017. Trends and temporal-spatial distribution of fiber quality in the national cotton variety regional trials. Chinese Journal of Applied Ecology, 28, 589–602. (in Chinese)
Thyssen G N, Fang D D, Zeng L H, Campbell B T, Jones D C, McCarty J C, Jenkins J N. 2026. Breaking the repulsive linkage between fiber strength and yield in a cotton (Gossypium hirsutum L.) MAGIC population suggests dampening starvation responses can increase yield. Industrial Crops and Products, 241, 122857.
Walford S A, Wu Y R, Llewellyn D J, Dennis E S. 2011. GhMYB25-like: A key factor in early cotton fibre development. The Plant Journal, 65, 785–797.
Wan Q, Guan X Y, Yang N N, Wu H T, Pan M Q, Liu B L, Fang L, Yang S P, Hu Y, Ye W X, Zhang H, Ma P Y, Chen J D, Wang Q, Mei G F, Cai C P, Yang D L, Wang J W, Guo W Z, Zhang W H, et al. 2016. Small interfering RNAs from bidirectional transcripts of GhMML3_A12 regulate cotton fiber development. New Phytologist, 210, 1298–1310.
Wang C Y, Qi S H, Niu Z, Wang J B. 2003. Evaluating soil moisture status in China using the temperature-vegetation dryness index (TVDI). National Remote Sensing Bulletin, 5, 420–427.
Wang G N, Sun Z W, Yang J, Ma Q M, Wang X Y, Ke H F, Huang X, Zhang L, Wang G Y, Gu Q S, Zhang D M, Wu J H, Zhang Y, Wu L Q, Zhang G Y, Ma Z Y, Wang X F. 2025. The speed breeding technology of five generations per year in cotton. Theoretical and Applied Genetics, 138, 79.
Wang G L, Si Q X, Chen Z G, Yu Z, Guo Z, Wang L, Li W X, Guo W Z. 2026. GbWAKL20 phosphorylates GbNFYB8 to modulate Verticillium wilt resistance in cotton. Advanced Science, 13, e15724.
Wang G L, Zhang D Y, Wang H T, Kong J M, Chen Z G, Ruan C F, Deng C Y, Zheng Q H, Guo Z, Liu H Q, Li W X, Wang X Y, Guo W Z. 2024. Natural SNP variation in GbOSM1 promotor enhances Verticillium wilt resistance in cotton. Advanced Science, 11, 2406522.
Wang K B, Wang Z W, Li F G, Ye W W, Wang J Y, Song G L, Yue Z, Cong L, Shang H H, Zhu S L, Zou C S, Li Q, Yuan Y L, Lu C R, Wei H L, Gou C Y, Zheng Z Q, Yin Y, Zhang X Y, Liu K, et al. 2012. The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics, 44, 1098–1103.
Wang L, Yang Y L, Qin J H, Ma Q F, Qiao K K, Fan S L, Qu Y Y. 2025. Integrative GWAS and transcriptomics reveal GhAMT2 as a key regulator of cotton resistance to Verticillium wilt. Frontiers in Plant Science, 16, 1563466.
Wang L J, Guo D Z, Zhao G D, Wang J Y, Zhang S X, Wang C, Guo X Q. 2022. Group IIc WRKY transcription factors regulate cotton resistance to Fusarium oxysporum by promoting GhMKK2 mediated flavonoid biosynthesis. New Phytologist, 236, 249–265.
Wang M J, Li J Y, Qi Z Y, Long Y X, Pei L L, Huang X H, Grover C E, Du X M, Xia C J, Wang P C, Liu Z P, You J Q, Tian X H, Ma Y Z, Wang R P, Chen X Y, He X, Fang D D, Sun Y Q, Tu L L, et al. 2022a. Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. Nature Genetics, 54, 1959–1971.
Wang M J, Li J Y, Wang P C, Liu F, Liu Z P, Zhao G N, Xu Z P, Pei L L, Grover C E, Wendel J F, Wang K B, Zhang X L. 2021. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular Biology and Evolution, 38, 3621–3636.
Wang M J, Qi Z Y, Thyssen G N, Naoumkina M, Jenkins J N, McCarty J C, Xiao Y J, Li J Y, Zhang X L, Fang D D. 2022b. Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton. Communications Biology, 5, 60.
Wang M J, Tu L L, Yuan D J, Zhu D, Shen C, Li J Y, Liu F Y, Pei L L, Wang P C, Zhao G N, Ye Z X, Huang H, Yan F L, Ma Y Z, Zhang L, Liu M, You J Q, Yang Y C, Liu Z P, Huang F, et al. 2019. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 51, 224–229.
Wang P, Zhou L, Jamieson P, Zhang L, Zhao Z X, Babilonia K, Shao W Y, Wu L Z, Mustafa R, Amin I, Diomaiuti A, Pontiggia D, Ferrari S, Hou Y X, He P, Shan L B. 2020. The cotton wall-associated kinase GhWAK7A mediates responses to fungal wilt pathogens by complexing with the chitin sensory receptors. The Plant Cell, 32, 3978–4001.
Wang P L, Abbas M, He J H, Zhou L L, Cheng H M, Guo H M. 2024. Advances in genome sequencing and artificially induced mutation provides new avenues for cotton breeding. Frontiers in Plant Science, 15, 1400201.
Wang P P, Dong N, Wang M J, Sun G F, Jia Y H, Geng X L, Liu M, Wang W P, Pan Z E, Yang Q Y, Li H G, Wei C Y, Wang L R, Zheng H K, He S P, Zhang X L, Wang Q L, Du X M. 2022. Introgression from Gossypium hirsutum is a driver for population divergence and genetic diversity in Gossypium barbadense. The Plant Journal, 110, 764–780.
Wang Q Q, Yang G Q, Jia R Y, Wang F Q, Wang G Y, Xu Z P, Li J Y, Li B, Yu L, Zhang Y, Alariqi M, Cao J L, Liang S J, Zhang X L, Nie X H, Jin S X. 2024. Utilizing the mutant library to investigate the functional characterization of GhGLR3.4 regulating jasmonic acid to defense pest infestation. The Plant Journal, 120, 2889–2903.
Wang X Q, Lu H J, Zhao Y, Zhang Z Y, Li J, Dong Z Y, Hao Y P, Fang L, Guan X Y, Zhao T, Hu Y, Zhang T Z. 2024. A super pan-genome map provides genomic insights into evolution of diploid cotton species. iMetaOmics, 1, doi: 10.1002/imo2.15.
Wang Y Q, Liang C Z, Wu S J, Jian G L, Zhang X Y, Zhang H Y, Tang J Y, Li J, Jiao G L, Li F G, Chu C C. 2020. Vascular-specific expression of Gastrodia antifungal protein gene significantly enhanced cotton Verticillium wilt resistance. Plant Biotechnology Journal, 18, 1498.
Wen X P, Chen Z W, Yang Z R, Wang M J, Jin S X, Wang G D, Zhang L, Wang L J, Li J Y, Saeed S, He S P, Wang Z, Wang K, Kong Z S, Li F G, Zhang X L, Chen X Y, Zhu Y X. 2023. A comprehensive overview of cotton genomics, biotechnology and molecular biological studies. Science China Life Sciences, 66, 2214–2256.
Wen X P, Zhai Y F, Zhang L, Chen Y J, Zhu Z Y, Chen G, Wang K, Zhu Y X. 2022. Molecular studies of cellulose synthase supercomplex from cotton fiber reveal its unique biochemical properties. Science China Life Sciences, 65, 1776–1793.
Wu B J, Yang P, Zuo W Q, Zhang W F. 2023a. Optimizing water and nitrogen management can enhance nitrogen heterogeneity and stimulate root foraging. Field Crops Research, 304, 109183.
Wu B J, Zhang L, Tian J S, Zhang G J, Zhang W F. 2023b. Fine root dynamics, longevity, and canopy characteristics of cotton under varying water and nitrogen levels. Plant and Soil, 482, 191–209.
Wu W K, Nie G B, Lin J L, Huang J F, Guo X X, Chen M, Fang X, Mao Y B, Li Y, Wang L J, Tao X Y, Gao Y, Yang Z R, Huang J Q. 2024. Regulation of glandular size and phytoalexin biosynthesis by a negative feedback loop in cotton. Advanced Science, 11, e2403059.
Xiao S H, Ming Y Q, Hu Q, Ye Z X, Si H, Liu S M, Zhang X J, Wang W R, Yu Y, Kong J, Klosterman S J, Lindsey K, Zhang X L, Aierxi A, Zhu L F. 2023. GhWRKY41 forms a positive feedback regulation loop and increases cotton defence response against Verticillium dahliae by regulating phenylpropanoid metabolism. Plant Biotechnology Journal, 21, 961–978.
Xiong X P, Sun S C, Zhu Q H, Zhang X Y, Li Y J, Liu F, Xue F, Sun J. 2021. The cotton lignin biosynthetic gene Gh4CL30 regulates lignification and phenolic content and contributes to Verticillium wilt resistance. Molecular Plant-Microbe Interactions, 34, 240–254.
Xu F, Huang L, Wang J Y, Ma C X, Tan Y Q, Wang F L, Fan Y H, Luo M. 2022. Sphingolipid synthesis inhibitor fumonisin B1 causes verticillium wilt in cotton. Journal of Integrative Plant Biology, 64, 836–42.
Xu Y, Yang Q, Zheng H, Xu Y, Sang Z, Guo Z, Peng H, Zhang C, Lan H, Wang Y. 2020. Genotyping by target sequencing (GBTS) and its applications. Scientia Agricultura Sinica, 53, 2983–3004. (in Chinese)
Xu Z P, Wang G Y, Zhu X Q, Wang R P, Zhu L F, Tu L L, Liu Y L, Peng R H, Lindsey K, Wang M J, Zhang X L, Jin S X. 2025. Genome assembly of two allotetraploid cotton germplasms reveals mechanisms of somatic embryogenesis and enables precise genome editing. Nature Genetics, 57, 2028–2039.
Yang D Y, Zhang X J, Ming Y Q, Liu C L, Zhang X L, Liu S M, Zhu L F. 2024. Characterization of the high-quality genome sequence and virulence factors of Fusarium oxysporum f. sp. vasinfectum race 7. Journal of Fungi, 10, 242.
Yang H L, Li X S, Bozorov T A, Zhang J W, Jiamahate A, Zhang D W, Wang J C, Yang Q L, Liu Z R, Mahesati D, Xu H. 2026. Ectopic expression of ScALDH21 from a desert moss enhances cotton resistance to Verticillium wilt via the modulation of jasmonates and phenylpropanoid pathways. Plant Biotechnology Journal, 24, 4916–4932.
Yang Z E, Gao C X, Zhang Y H, Yan Q D, Hu W, Yang L, Wang Z, Li F G. 2023. Recent progression and future perspectives in cotton genomic breeding. Journal of Integrative Plant Biology, 65, 548–569.
Yang Z E, Ge X Y, Yang Z R, Qin W Q, Sun G F, Wang Z, Li Z, Liu J, Wu J, Wang Y, Lu L L, Wang P, Mo H J, Zhang X Y, Li F G. 2019. Extensive intraspecific gene order and gene structural variations in upland cotton cultivars. Nature Communications, 10, 2989.
Yang Z E, Yang Z R, Gao C X, Zhang M J, Hu G J, Yang L, Zhang Y H, Ma M, Liu R J, Wang Z, Gao B B, Zhang Z B, Zhao H, Liu X, Ma X F, Wendel J F, Ge X Y, Li F G. 2026. Graph pan-genome illuminates evolutionary trajectories and agronomic trait architecture in allotetraploid cotton. Nature Genetics, 58, 218–229.
Yang Z R, Liu Z, Ge X Y, Lu L L, Qin W Q, Qanmber G, Liu L, Wang Z, Li F G. 2023. Brassinosteroids regulate cotton fiber elongation by modulating very-long-chain fatty acid biosynthesis. The Plant Cell, 35, 2114–2131.
Ye Y L, Wang P L, Zhang M, Abbas M, Zhang J X, Liang C Z, Wang Y, Wei Y X, Meng Z G, Zhang R. 2023. UAV-based time-series phenotyping reveals the genetic basis of plant height in upland cotton. The Plant Journal, 115, 937–951.
Yi F F, Li Y Z, Song A S, Shi X Y, Hu S C, Wu S, Shao L L, Chu Z Y, Xu K, Li L L, Tran L S P, Li W Q, Cai Y F. 2024. Positive roles of the Ca2+ sensors GbCML45 and GbCML50 in improving cotton Verticillium wilt resistance. Molecular Plant Pathology, 25, e13483.
Yi F F, Shao L L, Wu S, Cheng K, Zhang Z, Li Y Z, Hu S C, Wan J P, Liu Q, Guo L J, Zhang X Y, Shang B S, Yu J J, Zheng H Q, Liu J G, Cai Y F, Zhang X. 2026. Cotton gland formation genes GbCGF2/3 positively regulate Verticillium wilt resistance through modulating suberin biosynthesis. New Phytologist, 249, 1920–1936.
Yuan D J, Tang Z H, Wang M J, Gao W H, Tu L L, Jin X, Chen L L, He Y H, Zhang L, Zhu L F, Li Y, Liang Q Q, Lin Z X, Yang X Y, Liu N A, Jin S X, Lei Y, Ding Y H, Li G L, Ruan X A, et al. 2015. The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. Scientific Reports, 5, 17662–17677.
Zhang D M, Wang Y, Gu Q S, Liu L X, Wang Z C, Zhang J, Meng C S, Yang J, Zhang Z X, Ma Z Y, Wang X F, Zhang Y. 2025. Cotton RLP6 interacts with NDR1/HIN6 to enhance Verticillium wilt resistance via altering ROS and SA. Molecular Plant Pathology, 26, e70052.
Zhang D M, Zhang Y J, Sun L, Dai J L, Dong H Z. 2023. Mitigating salinity stress and improving cotton productivity with agronomic practices. Agronomy, 13, 2486.
Zhang H, Zhou Y, Bedsole C O, Shim W B. 2026. Fusarium oxysporum f. sp. vasinfectum race 4 (Fov4) FNP1, a nonribosomal peptide synthetase gene, plays an important role in cotton Fusarium wilt. Molecular Plant-Microbe Interactions, 39, 450–61.
Zhang J, Chen R, Dai F, Tian Y, Shi Y, He Y, Hu Y, Zhang T Z. 2025. Spatial transcriptome and single-cell RNA sequencing reveal the molecular basis of cotton fiber initiation development. The Plant Journal, 121, e70064.
Zhang L, Liu J L, Cheng J R, Sun Q, Zhang Y G, Liu J G, Li H M, Zhang Z, Wang P, Cai C W, Chu Z Y, Zhang X, Yuan Y L, Shi Y Z, Cai Y F. 2022. lncRNA7 and lncRNA2 modulate cell wall defense genes to regulate cotton resistance to Verticillium wilt. Plant Physiology, 189, 264–284.
Zhang T Z, Hu Y, Jiang W K, Fang L, Guan X Y, Chen J D, Zhang J B, Saski C A, Scheffler B E, Stelly D M, Hulse-Kemp A M, Wan Q, Liu B L, Liu C X, Wang S, Pan M Q, Wang Y K, Wang D W, Ye W X, Chang L J, et al. 2015. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology, 33, 531–537.
Zhang X Y, Sun Z W, Cao M Y, Wang H Z, Gu Q S, Yang J, Tang S X, Ke H F, Zhang D M, Wu L Q, Wang Z H, Tian B C, Lu H Y, Wang X F, Zhang Y, Ma Z Y. 2026. MianxinNo.1: A modern cultivar genome-informed SNP array based on cGPS technology for genomics-assisted breeding in cotton. Theoretical and Applied Genetics, 139, 208.
Zhang Y, Chen B, Sun Z W, Liu Z W, Cui Y R, Ke H F, Wang Z C, Wu L Q, Zhang G Y, Wang G I, Li Z K, Yang J, Wu J H, Shi R K, Liu S, Wang X F, Ma Z Y. 2021. A large-scale genomic association analysis identifies a fragment in Dt11 chromosome conferring cotton Verticillium wilt resistance. Plant Biotechnology Journal, 19, 2126–2138.
Zhang Y, Sun Z W, Tian S L, Wu L Q, Gu Q S, Ke H F, Zhang G Y, Chen B, Wang Z C, Zhang J, Zhang X Y, Li Z M, Yang J, Li X K, Jiang Y F, Zhang K J, Wu J H, Wang G N, Zhang D M, Wang X Y, et al. 2026. A pangenome reference and population studies link structural variants with breeding traits in Gossypium hirsutum. Nature Genetics, 58, 928–939.
Zhang Y H, Yuan Y, Xi H F, Zhang Y N, Gao C X, Ma M, Huang Q, Li F G, Yang Z E. 2024. Promotion of apoplastic oxidative burst by artificially selected GhCBSX3A enhances Verticillium dahliae resistance in upland cotton. The Plant Journal, 118, 2154–2168.
Zhang Y H, Zhang Y N, Ge X Y, Yuan Y, Jin Y Y, Wang Y, Zhao L H, Han X, Hu W, Yang L, Gao C X, Wei X, Li F G, Yang Z E. 2023. Genome-wide association analysis reveals a novel pathway mediated by a dual-TIR domain protein for pathogen resistance in cotton. Genome Biology, 24, 111.
Zhang Y J, Dong H Z. 2024. Resolved concerns after 28 years of Bt cotton in China. Journal of Cotton Research, 7, 29.
Zhang Z W, Li K X, Yu K K, Yang M F, Wang Y K, Liao Q H, Zhang J Q, Tang X L, Chen G D, Wan S M, Lou S W, Li F J, Tian X L, Li Z H, Du M W. 2025. Canopy microenvironment and hormonal coordination mediate defoliation dynamics under altered sink–source in high-density cotton. Journal of Integrative Agriculture, doi: 10.1016/j.jia.2025.07.016.
Zhang Z X, Zhang J, Wang Z C, Zhang X Y, Chen W Y, Jiao M J, Xie M X, Yang J, Zhang D M, Wang X F, Ma Z Y, Zhang Y. 2026. The landscape of cotton DNA methylation and its epigenetic regulation in Verticillium wilt resistance. Plant Cell Reports, 45, 127.
Zhang Z Y, Zhao J, Ding L Y, Zou L F, Li Y R, Chen G Y, Zhang T Z. 2016. Constitutive expression of a novel antimicrobial protein, Hcm1, confers resistance to both Verticillium and Fusarium wilts in cotton. Scientific Reports, 6, 20773.
Zhao F H, Wang D, Liu H Z, Shan Y J, Qi H Y, Dai X F, Chen J Y, Lesueur D, Han D F, Zhang X J, Zhang D D. 2024. The biocontrol strain Bacillus mojavensis KRS009 confers resistance to cotton Verticillium wilt and improves tolerance to salt stress. New Plant Protection, 1, e20.
Zhao G N, Le Y, Sun M L, Xu J W, Qin Y, Men S, Ye Z X, Tan H Z, Hu H Y, You J Q, Li J Y, Jin S X, Wang M J, Zhang X L, Lin Z X, Tu L L. 2024. A dominant negative mutation of GhMYB25-like alters cotton fiber initiation, reducing lint and fuzz. The Plant Cell, 36, 2759–2777.
Zhao N, Guo A H, Wang W R, Li B, Wang M, Zhou Z X, Jiang K Y, Aierxi A, Wang B L, Adjibolosoo D, Xia Z H, Li H J, Cui Y N, Kong J, Hua J P. 2024. GbPP2C80 interacts with GbWAKL14 to negatively co-regulate resistance to Fusarium and Verticillium wilt via MPK3 and ROS signaling in Sea Island cotton. Advanced Science, 11, 2309785.
Zhao N, Wang W R, Grover C E, Jiang K Y, Pan Z X, Guo B S, Zhu J H, Su Y, Wang M, Nie H S, Xiao L, Guo A H, Yang J, Cheng C, Ning X M, Li B, Xu H J, Adjibolosoo D, Aierxi A, Li P B, et al. 2022. Genomic and GWAS analyses demonstrate phylogenomic relationships of Gossypium barbadense in China and selection for fibre length, lint percentage and Fusarium wilt resistance. Plant Biotechnology Journal, 20, 691–710.
Zhao T, Wu H Y, Wang X T, Zhao Y Y, Wang L Y, Pan J Y, Mei H, Han J, Wang S Y, Lu K N, Li M L, Gao M T, Cao Z Y, Zhang H L, Wan K, Li J, Fang L, Zhang T Z, Guan X Y. 2023. Integration of eQTL and machine learning to dissect causal genes with pleiotropic effects in genetic regulation networks of seed cotton yield. Cell Reports, 42, 113111.
Zhao X F, Zhu A L, Liu X H, Li H Y, Tao H Y, Guo X X, Liu J F. 2025. Current status, challenges, and opportunities for sustainable crop production in Xinjiang. iScience, 28, doi: 10.1016/j.isci.2025.112114.
Zhi X Y, Chen Q M, Han Y C, Yang B F, Wang Y R, Wu F Q, Xiong S W, Jiao Y H, Ma Y Z, Shang S L, Lin T, Lei Y P, Li Y B. 2025. Multi-modal feature integration from UAV-RGB imagery for high-precision cotton phenotyping: A paradigm shift toward cost-effective agricultural remote sensing. Computers and Electronics in Agriculture, 226, 109402.
Zhou J Y, Hua Z Q, Zhang Y J, Li Z H, Xu S Z, Tian X L, Dong H Z, Li Z H. 2025. Light-hormone crosstalk modulates vegetative branching and yield stability in dual-planting cotton systems. Field Crops Research, 333, 110103.
Zhu H, Zhang Y, Zhang X, Jing H, Zhao L, Feng H, Feng Z, Wei F, Zhou J, Han J. 2026. Major achievements and prospects of cotton breeding for resistance to Verticillium wilt in 21st century. China Cotton, 53, 4–9. (in Chinese)
Zhu Y, Thyssen G N, Abdelraheem A, Teng Z H, Fang D D, Jenkins J N, McCarty J C, Wedegaertner T, Hake K, Zhang J F. 2022. A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance. Theoretical and Applied Genetics, 135, 2297–2312.
Zuo W Q, Wu B J, Wang Y X, Xu S Z, Chen M Z, Liang F B, Tian J S, Zhang W F. 2024. Optimal row spacing configuration to improve cotton yield or quality is regulated by plant density and irrigation rate. Field Crops Research, 305, 109187.
|