Abbai R, Singh V K, Nachimuthu V V, Sinha P, Selvaraj R, Vipparla A K, Singh A K, Singh U M, Varshney R K, Kumar A. 2019. Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal, 17, 1612–1622.
Ayoub M, Symons J, Edney J, Mather E. 2002. QTLs affecting kernel size and shape in a two-rowed by six-rowed barley cross. Theoretical and Applied Genetics, 105, 237–247.
Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, Ibrahim H H, Pozzi C, Rohde W, Salamini F. 2000. On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology and Evolution, 17, 499–510.
Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q. 2006. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics, 112, 1164–1171.
Fang N, Xu R, Huang L, Zhang B, Duan P, Li N, Luo Y, Li Y. 2016. SMALL GRAIN 11 controls grain size, grain number and grain yield in rice. Rice (NY), 9, 64.
Hill C B, Angessa T T, McFawn L A, Wong D, Tibbits J, Zhang X Q, Forrest K, Moody D, Telfer P, Westcott S, Diepeveen D, Xu Y, Tan C, Hayden M, Li C. 2019. Hybridisation-based target enrichment of phenology genes to dissect the genetic basis of yield and adaptation in barley. Plant Biotechnology Journal, 17, 932–944.
Hong Y, Zhang M, Xu R. 2023. Genetic localization and homologous genes mining for barley grain size. International Journal of Molecular Sciences, 24, 4932.
Houston K, McKim S M, Comadran J, Bonar N, Druka I, Uzrek N, Cirillo E, Guzy-Wrobelska J, Collins N C, Halpin C, Hansson M, Dockter C, Druka A, Waugh R. 2013. Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences of the United States of America, 110, 16675–16680.
Hu J, Wang Y, Fang Y, Zeng L, Xu J, Yu H, Shi Z, Pan J, Zhang D, Kang S, Zhu L, Dong G, Guo L, Zeng D, Zhang G, Xie L, Xiong G, Li J, Qian Q. 2015. A rare allele of GS2 enhances grain size and grain yield in rice. Molecular Plant, 8, 1455–1465.
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E. 2013. Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. Nature Genetics, 45, 707–711.
Jaiswal V, Gahlaut V, Mathur S, Agarwal P, Khandelwal M K, Khurana J P, Tyagi A K, Balyan H S, Gupta P K. 2015. Identification of novel SNP in promoter sequence of TaGW2-6A associated with grain weight and other agronomic traits in wheat (Triticum aestivum L.). Public Library of Science, 10, e0129400.
Jayakodi M, Padmarasu S, Haberer G, Bonthala V S, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang X Q, Angessa T T, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston L B, Plott C. 2020. The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588, 284–289.
Jiang C, Lei M, Guo Y, Gao G, Shi L, Jin Y, Cai Y, Himmelbach A, Zhou S, He Q, Yao X, Kan J, Haberer G, Duan F, Li L, Liu J, Zhang J, Spannagl M, Liu C, Stein N. 2022. A reference-guided TILLING by amplicon-sequencing platform supports forward and reverse genetics in barley. Plant Communications, 3, 100317.
Kabir M R, Nonhebel H M. 2021. Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains. Theoretical and Applied Genetics, 134, 2051–2062.
Khan N, Zhang Y, Wang J, Li Y, Chen X, Yang L, Zhang J, Li C, Li L, Ur Rehman S, Reynolds M P, Zhang L, Zhang X, Mao X, Jing R. 2022. TaGSNE, a WRKY transcription factor, overcomes the trade-off between grain size and grain number in common wheat and is associated with root development. Journal of Experimental Botany, 73, 6678–6696.
Kim S R, Ramos J, Ashikari M, Virk P S, Torres E A, Nissila E, Hechanova S L, Mauleon R, Jena K K. 2016. Development and validation of allele-specific SNP/InDel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. Rice (NY), 9, 12.
Li Y, Fan C, Xing Y, Jiang Y, Luo L, Sun L, Shao D, Xu C, Li X, Xiao J, He Y, Zhang Q. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nature Genetics, 43, 1266–1269.
Liu H, Si X, Wang Z, Cao L, Gao L, Zhou X, Wang W, Wang K, Jiao C, Zhuang L, Liu Y, Hou J, Li T, Hao C, Guo W, Liu J, Zhang X. 2023. TaTPP-7A positively feedback regulates grain filling and wheat grain yield through T6P-SnRK1 signalling pathway and sugar-ABA interaction. Plant Biotechnol Journey, 21, 1159–1175.
Liu Y, Wang X, Hao C, Ahsan I, Li T, Liu H, Hou J, Zhang X. 2023. TaABI19 positively regulates grain development in wheat. Journal of Integrative Agriculture, 22, 41–51.
Lu X, Fang Y, Tian B, Tong T, Wang J, Wang H, Cai S, Hu J, Zeng D, Xu H, Zhang X, Xue D. 2019. Genetic variation of HvXYN1 associated with endoxylanase activity and TAX content in barley (Hordeum vulgare L.). BMC Plant Biology, 19, 170.
Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, Li X, Zhang Q. 2010. Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proceedings of the National Academy of Sciences of the United States of America, 107, 19579–19584.
Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok S O, Wicker T, Radchuk V, Dockter C, Hedley P E, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang X Q, Zhang Q, Barrero R A, Li L, Taudien S, Groth M, et al. 2017. A chromosome conformation capture ordered sequence of the barley genome. Nature, 544, 427–433.
Matthies I E, Weise S, Förster J, Korzun V, Stein N, Röder M S. 2013. Nitrogen-metabolism related genes in barley-haplotype diversity, linkage mapping and associations with malting and kernel quality parameters. BMC Genetics, 14, 77.
Murray M G, Thompson W F. 1980. Rapid isolation of high weight plant DNA. Nucleic Acids Research, 8, 4321–4325.
Qiao J, Jiang H, Lin Y, Shang L, Wang M, Li D, Fu X, Geisler M, Qi Y, Gao Z, Qian Q. 2021. A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice. Molecular Plant, 14, 1683–1698.
Qin D, Dong J, Xu F, Guo G, Ge S, Xu Q, Xu Y, Li M. 2015. Characterization and fine mapping of a novel barley Stage Green-Revertible Albino Gene (HvSGRA) by Bulked Segregant Analysis based on SSR assay and Specific Length Amplified Fragment Sequencing. BMC Genomics, 16, 838.
Qin D, Liu G, Liu R, Wang C, Xu F, Xu Q, Ling Y, Dong G, Peng Y, Ge S, Guo G, Dong J, Li C. 2023. Positional cloning identified HvTUBULIN8 as the candidate gene for round lateral spikelet (RLS) in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 136, 7.
Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M. 2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nature Genetics, 40, 1023–1028.
Shrestha A, Cosenza F, van Inghelandt D, Wu P Y, Li J, Casale F A, Weisweiler M, Stich B. 2022. The double round-robin population unravels the genetic architecture of grain size in barley. Journal of Experimental Botany, 73, 7344–7361.
Song X J, Huang W, Shi M, Zhu M Z, Lin H X. 2007. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature Genetics, 39, 623–630.
Walker C K, Ford R, Muñoz-Amatriaín M, Panozzo J F. 2013. The detection of QTLs in barley associated with endosperm hardness, grain density, grain size and malting quality using rapid phenotyping tools. Theoretical and Applied Genetics, 126, 2533–2551.
Wang Q, Sun G, Ren X, Du B, Cheng Y, Wang Y, Li C, Sun D. 2019. Dissecting the genetic basis of grain size and weight in barley (Hordeum vulgare L.) by QTL and comparative genetic analyses. Front Plant Science, 10, 469.
Wang S, Li S, Liu Q, Wu K, Zhang J, Wang S, Wang Y, Chen X, Zhang Y, Gao C, Wang F, Huang H, Fu X. 2015. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nature Genetics, 47, 949–954.
Wang S, Wu K, Yuan Q, Liu X, Liu Z, Lin X, Zeng R, Zhu H, Dong G, Qian Q, Zhang G, Fu X. 2012. Control of grain size, shape and quality by OsSPL16 in rice. Nature Genetics, 44, 950–954.
Wang Y, Xiong G, Hu J, Jiang L, Yu H, Xu J, Fang Y, Zeng L, Xu E, Xu J, Ye W, Meng X, Liu R, Chen H, Jing Y, Wang Y, Zhu X, Li J, Qian Q. 2015. Copy number variation at the GL7 locus contributes to grain size diversity in rice. Nature Genetics, 47, 944–948.
Watt C, Zhou G, McFawn L A, Chalmers K J, Li C. 2019. Fine mapping of qGL5H, a major grain length locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 132, 883–893.
Watt C, Zhou G, McFawn L A, Li C. 2020. Fine mapping qGL2H, a major locus controlling grain length in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 133, 2095–2103.
Weng J, Gu S, Wan X, Gao H, Guo T, Su N, Lei C, Zhang X, Cheng Z, Guo X, Wang J, Jiang L, Zhai H, Wan J. 2008. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Research, 18, 1199–1209.
Wu B, Shi M, Mohammad P, Zhao Q, Wang Y, Yang C, Qiao L, Zhao J, Yan S, Zheng X, Zheng J. 2022. Allele mining of wheat ABA receptor at TaPYL4 suggests neo-functionalization among the wheat homoeologs. Journal of Integrative Agriculture, 21, 2183–2196.
Xia Y, Ning Z, Bai G, Li R, Yan G, Siddique K H, Baum M, Guo P. 2012. Allelic variations of a light harvesting chlorophyll a/b-binding protein gene (Lhcb1) associated with agronomic traits in barley. Public Library of Science, 7, e37573.
Xu F, Fang J, Ou S, Gao S, Zhang F, Du L, Xiao Y, Wang H, Sun X, Chu J, Wang G, Chu C. 2015. Variations in CYP78A13 coding region influence grain size and yield in rice. Plant Cell Environment, 38, 800–811.
Xu H, Sun H, Dong J, Ma C, Li J, Li Z, Wang Y, Ji J, Hu X, Wu M, Zhao C, Qin R, Wu J, Ni F, Cui F, Wu Y. 2022. The brassinosteroid biosynthesis gene TaD11-2A controls grain size and its elite haplotype improves wheat grain yields. Theoretical and Applied Genetics, 135, 2907–2923.
Xu X, Sharma R, Tondelli A, Russell J, Comadran J, Schnaithmann F, Pillen K, Kilian B, Cattivelli L, Thomas W T B, Flavell A J. 2018. Genome-wide association analysis of grain yield-associated traits in a pan - European barley cultivar collection. Plant Genome, 11, 1–11.
Yang J, Zhou Y, Wu Q, Chen Y, Zhang P, Zhang Y, Hu W, Wang X, Zhao H, Dong L, Han J, Liu Z, Cao T. 2019a. Molecular characterization of a novel TaGL3-5A allele and its association with grain length in wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 132, 1799–1814.
Yang J, Zhou Y, Zhang Y, Hu W, Wu Q, Chen Y, Wang X, Guo G, Liu Z, Cao T, Zhao H. 2019b. Cloning, characterization of TaGS3 and identification of allelic variation associated with kernel traits in wheat (Triticum aestivum L.). BMC Genetics, 20, 98.
Yin C, Li H, Li S, Xu L, Zhao Z, Wang J. 2015. Genetic dissection on rice grain shape by the two-dimensional image analysis in one japonica×indica population consisting of recombinant inbred lines. Theoretical and Applied Genetics, 128, 1969–1986.
Zhang B, Liu X, Xu W, Chang J, Li A, Mao X, Zhang X, Jing R. 2015. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Scientific Reports, 5, 12211.
Zhang L, Ma B, Bian Z, Li X, Zhang C, Liu J, Li Q, Liu Q, He Z. 2020. Grain size selection using novel functional markers targeting 14 genes in rice. Rice (NY), 13, 63.
Zhou H, Liu S, Liu Y, Liu Y, You J, Deng M, Ma J, Chen G, Wei Y, Liu C, Zheng Y. 2016. Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum). BMC Genetics, 17, 130.
Zuo J, Li J. 2014. Molecular genetic dissection of quantitative trait loci regulating rice grain size. Annual Review of Genetics, 48, 99–118.
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