Asakura M, Ninomiya S, Sugimoto M, Oku M, Yamashita S, Okuno T, Sakai Y, Takanoa Y. 2009. Atg26-mediated pexophagy is required for host invasion by the plant pathogenic fungus Colletotrichum orbiculare. The Plant Cell, 21, 1291–1304.
Blanco F A, Judelson H S. 2005. A bZIP transcription factor from Phytophthora interacts with a protein kinase and is required for zoospore motility and plant infection. Molecular Microbiology, 56, 638–648.
Chen L, Zhang X, Wang W, Geng X J, Shi Y, Na R, Dou D L, Li H L. 2017. Network and role analysis of autophagy in Phytophthora sojae. Scientific Reports, 7, 1879.
Fang Y F, Cui L K, Gu B, Arredondo F, Tyler B M. 2017. Efficient genome editing in the oomycete Phytophthora sojae using CRISPR/Cas9. Current Protocols in Microbiology, 44, 21A.1.1–21A.1.26.
Farré J C, Subramani S. 2016. Mechanistic insights into selective autophagy pathways: lessons from yeast. Nature Reviews Molecular Cell Biology, 17, 537–552.
Fukuda T, Furukawa K, Maruyama T, Noda N N, Kanki T. 2023a. Mitofissin: a novel mitochondrial fission protein that facilitates mitophagy. Autophagy, 19, 3019–3021.
Fukuda T, Furukawa K, Maruyama T, Yamashita S I, Noshiro D, Song C, Ogasawara Y, Okuyama K, Alam J M, Hayatsu M, Saigusa T, Inoue K, Ikeda K, Takai A, Chen L, Lahiri V, Okada Y, Shibata S, Murata K, Klionsky D J, et al. 2023b. The mitochondrial intermembrane space protein mitofissin drives mitochondrial fission required for mitophagy. Molecular Cell, 83, 2045–2058.e9.
Fukuda T, Kanki T. 2021. Atg43, a novel autophagy-related protein, serves as a mitophagy receptor to bridge mitochondria with phagophores in fission yeast. Autophagy, 17, 826–827.
Guan B, Xue H. 2022. Arabidopsis autophagy-related 3 (ATG3) facilitates the liquid–liquid phase separation of ATG8e to promote autophagy. Science Bulletin, 67, 350–354.
Han S, Wang Y, Zheng X, Jia Q, Zhao J, Bai F, Hong Y, Liu Y. 2015. Cytoplastic glyceraldehyde-3-phosphate dehydrogenases interact with ATG3 to negatively regulate autophagy and immunity in Nicotiana benthamiana. The Plant Cell, 27, 1316–1331.
Hanada T, Satomi Y, Takao T, Ohsumi Y. 2009. The amino-terminal region of Atg3 is essential for association with phosphatidylethanolamine in Atg8 lipidation. Federation of European Biochemical Societies Letters, 583, 1078–1083.
Hardham A R. 2007. Cell biology of plant–oomycete interactions. Cell Microbiology, 9, 31–39.
Huang J M, Xi P G, Deng Y Z, Huang W X, Wang J R, Zhao Q Q, Yang W S, Li W, Situ J J, Jiang L Q, Guan T F, Li M H, Jiang Z D, Kong G H. 2021. The mitogen-activated protein kinase PlMAPK2 is involved in zoosporogenesis and pathogenicity of Peronophythora litchii. International Journal of Molecular Sciences, 22, 3524.
Hurley J H, Schulman B A. 2014. Atomistic autophagy: The structures of cellular self-digestion. Cell, 157, 300–311.
Ichimura Y, Kirisako T, Takao T, Satomi Y, Shimonishi Y, Ishihara N, Mizushima N, Tanida I, Kominami E, Ohsumi M, Noda T, Ohsumi Y. 2000. A ubiquitin-like system mediates protein lipidation. Nature, 408, 488–492.
Jiang Y M, Wang Y, Song L, Liu H, Lichter A, Kerdchoechuen O, Joyce D C, Shi J. 2006. Postharvest characteristics and handling of litchi fruit - an overview. Australian Journal of Experimental Agriculture, 46, 1541–1556.
Judelson H S, Blanco F A. 2005. The spores of Phytophthora: Weapons of the plant destroyer. Nature Reviews Microbiology, 3, 47–58.
Kao C W, Leu L S. 1980. Sporangium germination of Peronophythora litchii, the causal organism of litchi downy blight. Mycologia, 72, 737–748.
Kershaw M J, Talbot N J. 2009. Genome-wide functional analysis reveals that infection-associated fungal autophagy is necessary for rice blast disease. The Proceedings of the National Academy of Sciences of the United States of America, 106, 15967–15972.
Khalid A R, Lv X L, Naeem M, Mehmood K, Shaheen H, Dong P, Qiu D, Ren M Z. 2019. Autophagy related gene (ATG3) is a key regulator for cell growth, development, and virulence of Fusarium oxysporum. Genes, 10, 658.
Kikuma T, Kitamoto K. 2011. Analysis of autophagy in Aspergillus oryzae by disruption of AoATG13, AoATG4, and AoATG15 genes. Federation of European Microbiological Societies Microbiology Letters, 316, 61–69.
Kikuma T, Ohneda M, Arioka M, Kitamoto K. 2006. Functional analysis of the Atg8 homologue AoAtg8 and role of autophagy in differentiation and germination in Aspergillus oryzae. Eukaryotic Cell, 5, 1328–1336.
Laboratories C. 2007. Matchmaker Gal4 Two-Hybrid System 3 & Libraries User Manual. [2007-4-3]. http://www.clontech.com/images/pt/PT3247-1.PDF
Li Y T, Yi C, Chen C C, Lan H, Pan M, Zhang S J, Huang Y C, Guan C J, Li Y M, Yu L, Liu L. 2017. A semisynthetic Atg3 reveals that acetylation promotes Atg3 membrane binding and Atg8 lipidation. Nature Communications, 8, 14846.
Lin L, Ye W W, Wu J W, Xuan M R, Li Y F, Gao J, Wang Y L, Wang Y, Dong S M, Wang Y C. 2018. The MADS-box transcription factor PsMAD1 is involved in zoosporogenesis and pathogenesis of Phytophthora sojae. Frontiers in Microbiology, 9, 2259.
Liu D D, Li Z X, Hou M L. 2022. Silencing the autophagy-related genes ATG3 and ATG9 promotes SRBSDV propagation and transmission in Sogatella furcifera. Insects, 13, 394.
Liu Y, Schiff M, Czymmek K, Tallóczy Z, Levine B, Dinesh-Kumar S P. 2005. Autophagy regulates programmed cell death during the plant innate immune response. Cell, 121, 567–577.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods, 25, 402–408.
Luo Q, Wang F X, Zhong N Q, Wang H Y, Xia G X. 2014. The role of autophagy during development of the oomycete pathogen Phytophthora infestans. Jouanal of Genetics Genomics, 41, 225–228.
Lv W Y, Wang C Y, Yang N, Que Y W, Talbot N J, Wang Z Y. 2017. Genome-wide functional analysis reveals that autophagy is necessary for growth, sporulation, deoxynivalenol production and virulence in Fusarium graminearum. Scientific Reports, 7, 11062.
Meng S, Xiong M, Jagernath J S, Wang C C, Qiu J H, Shi H B, Kou Y J. 2020. UvAtg8-mediated autophagy regulates fungal growth, stress responses, conidiation, and pathogenesis in Ustilaginoidea virens. Rice, 13, 56.
Mizushima N, Komatsu M. 2011. Autophagy: Renovation of cells and tissues. Cell, 147, 728–741.
Murrow L, Debnath J. 2018. Atg12–Atg3 coordinates basal autophagy, endolysosomal trafficking, and exosome release. Molecular & Cellular Oncology, 5, e1039191.
Murrow L, Malhotra R, Debnath J. 2015. ATG12–ATG3 interacts with Alix to promote basal autophagic flux and late endosome function. Nature Cell Biology, 17, 300–310.
Nadal M, Gold S E. 2010. The autophagy genes ATG8 and ATG1 affect morphogenesis and pathogenicity in Ustilago maydis. Molecular Plant Pathology, 11, 463–478.
Nair U, Yen W L, Mari M, Cao Y, Xie Z P, Baba M, Reggiori F, Klionsky D J. 2012. A role for Atg8-PE deconjugation in autophagosome biogenesis. Autophagy, 8, 780–793.
Pollack J K, Harris S D, Marten M R. 2009. Autophagy in filamentous fungi. Fungal Genetics and Biology, 46, 1–8.
Popelka H, Klionsky D J. 2021. Multiple structural rearrangements mediated by high-plasticity regions in Atg3 are key for efficient conjugation of Atg8 to PE during autophagy. Autophagy, 17, 1805–1808.
Qiu M, Li Y, Ye W W, Zheng X B, Wang Y C. 2021. A CRISPR/Cas9-mediated in situ complementation method for Phytophthora sojae mutants. Molecular Plant Pathology, 22, 373–381.
Radoshevich L, Murrow L, Chen N, Fernandez E, Roy S, Fung C, Debnath. J. 2010. ATG12 conjugation to ATG3 regulates mitochondrial homeostasis and cell death. Cell, 142, 590–600.
Sakoh-Nakatogawa M, Matoba K, Asai E, Kirisako H, Ishii J, Noda N N, Inagaki F, Nakatogawa H, Ohsumi Y. 2013. Atg12–Atg5 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site. Nature Structural & Molecular Biology, 20, 433–439.
Sun J H, Gao Z Y, Zhang X C, Zou X X, Cao L L, Wang J B. 2017. Transcriptome analysis of Phytophthora litchii reveals pathogenicity arsenals and confirms taxonomic status. PLoS ONE, 12, e0178245.
Suzuki K, Ohsumi Y. 2010. Current knowledge of the pre-autophagosomal structure (PAS). Federation of European Biochemical Societies Letters, 584, 1280–1286.
Talibi I, Boubaker H, Boudyach E H, Ben Aoumar A A. 2014. Alternative methods for the control of postharvest citrus diseases. Journal of Applied Microbiology, 117, 1–17.
Tanida I, Tanida-Miyake E, Komatsu M, Ueno T, Kominami E. 2002. Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p. Journal of Biological Chemistry, 277, 13739–13744.
Tyler B M. 2007. Phytophthora sojae: Root rot pathogen of soybean and model oomycete. Molecular Plant Pathology, 8, 1–8.
Veneault-Fourrey C, Barooah M, Egan M, Wakley G, Talbot N J. 2006. Autophagic fungal cell death is necessary for infection by the rice blast fungus. Science, 312, 580–583.
Voigt O, Poggeler S. 2013. Autophagy genes SmATG8 and SmATG4 are required for fruiting-body development, vegetative growth and ascospore germination in the filamentous ascomycete Sordaria macrospora. Autophagy, 9, 33–49.
Wang H C, Sun H Y, Stammler G, Ma J X, Zhou M G. 2009. Baseline and differential sensitivity of Peronophythora litchii (lychee downy blight) to three carboxylic acid amide fungicides. Plant Pathology, 58, 571–576.
Wang J R, Zhou G Q, Huang W X, Li W, Feng D L, Liu L C, Xi P G, Jiang Z D, Kong G H. 2022. Autophagy-related gene PlATG6a is involved in mycelial growth, asexual reproduction and tolerance to salt and oxidative stresses in Peronophythora litchii. International Journal of Molecular Sciences, 23, 1839.
Wang S, Li Y, Ma C. 2020. Atg3 promotes Atg8 lipidation via altering lipid diffusion and rearrangement. Protein Science, 29, 1511–1523.
Wei Y Z, Zhang H N, Li W C, Xie J H, Wang Y C, Liu L Q, Shi S Y. 2013. Phenological growth stages of lychee (Litchi chinensis Sonn.) using the extended BBCH-scale. Scientia Horticulturae, 161, 273–277.
Xu L X, Xue J H, Wu P, Wang D D, Lin L J, Jiang Y M, Duan X W, Wei X Y. 2013. Antifungal activity of hypothemycin against Peronophythora Litchii in vitro and in vivo. Journal of Agricultural and Food Chemistry, 61, 10091–10095.
Yamada Y, Suzuki N N, Hanada T, Ichimura Y, Kumeta H, Fujioka Y, Ohsumi Y, Inagaki F. 2007. The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation. Journal of Biological Chemistry, 282, 8036–8043.
Yamaguchi M, Noda N N, Nakatogawa H, Kumeta H, Ohsumi Y, Inagaki F. 2010. Autophagy-related protein 8 (Atg8) family interacting motif in Atg3 mediates the Atg3-Atg8 interaction and is crucial for the cytoplasm-to-vacuole targeting pathway. Journal of Biological Chemistry, 285, 29599–29607.
Ye C L, Feng Y L, Yu F F, Jiao Q Q, Wu J G, Ye Z H, Zhang P J, Sun C X, Pang K, Hao P Y, Yu X P. 2021. RNAi‐mediated silencing of the autophagy‐related gene NlATG3 inhibits survival and fecundity of the brown planthopper, Nilaparvata lugens. Pest Management Science, 77, 4658–4668.
Yi C, Ma M S, Ran L L, Zheng J X, Tong J J, Zhu J, Ma C Y, Sun Y F, Zhang S J, Feng W Z, Zhu L Y, Le Y, Gong X Q, Yan X H, Hong B, Jiang F J, Xie Z P, Miao D, Deng H T, Yu L. 2012. Function and molecular mechanism of acetylation in autophagy regulation. Science, 336, 474–477.
Yu G, Li W Q, Yang C D,Zhang X, Luo M F, Chen T X, Wang X J, Wang R B, Chen Q H. 2024. PlAtg8-mediated autophagy regulates vegetative growth, sporangial cleavage, and pathogenesis in Peronophythora litchii. Microbiology Spectrum, 12, e0353123.
Yue J Y, Wang Y J, Jiao J L, Wang H Z. 2021. Silencing of ATG2 and ATG7 promotes programmed cell death in wheat via inhibition of autophagy under salt stress. Ecotoxicology Environmental Safety, 225, 112761.
Zhao X R, Feng W J, Zhu X Y, Li C X, Ma X Y, Li X, Zhu X D, Wei D S. 2019. Conserved autophagy pathway contributes to stress tolerance and virulence and differentially controls autophagic flux upon nutrient starvation in Cryptococcus neoformans. Frontiers in Microbiology, 10, 2690.
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