Scientia Agricultura Sinica ›› 2015, Vol. 48 ›› Issue (21): 4219-4226.doi: 10.3864/j.issn.0578-1752.2015.21.003

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Cloning and Expression Analysis of the Potato Transcription Factor StWRKY8 Like Gene Induced by Ralstonia solanacearum

XUE Zhen, LI Hui, KONG Chao-yue, DUAN Ting-ting, GAO Gang   

  1. College of Life Science, Shanxi Normal University, Linfen 041004, Shanxi
  • Received:2015-04-20 Online:2015-11-01 Published:2015-11-01

Abstract: 【Objective】Clone the partial cDNA of the StWRKY8-like gene from a cultivated Solanum tuberosum Zhongshu 3 after inoculation with Ralstonia solanacearum. Analyze the StWRKY8-like gene coding sequence, and study the differential expression pattern of StWRKY8-like between susceptible and resistant S. tuberosum toward R. solanacearum and the tissue-specific expression of StWRKY8-like.【Method】R. solanacearum-resistant ED13 and R. solanacearum-susceptible Zhongshu 3 S. tuberosum were root-inoculated with R. solanacearum strain PO41. RNA were extracted from the leaves and reserve-transcribed into cDNA which was subjected for the construction of subtractive cDNA bank with the PCR Select cDNA Subtraction Kit. 384 positive clones were obtained as SMART cDNA bank and used as a template for 5′-RACE with SMART-RACE cDNA Amplification Kit to PCR amplify the StWRKY8-like gene. The StWRKY8-like gene sequence and DNA sequence similarity were analyzed by BioEdit and BLAST tools. Phylogenetic trees were established by MEGA 5.0. The biochemical feature, tertiary structure, phosphorylation sites and sub-cellular location of the StWRKY8-like protein were predicted by ProtParam/ProtScale, SWISS-MODEL, NetPhos2.0 Server, WOLF PSORT/TargetP1.1 Server, respectively. The RNA were extracted from the leaves of ED13 and Zhongshu 3 S. tuberosum at 6 h, 12 h, 1 d, 2 d, 3 d, 4 d, and 6 d post inoculation of the R. solanacearum strain PO41 for RT-PCR and real-time PCR analysis of the StWRKY8-like gene expression. Digoxin-labeled StWRKY8-like specific probes were in situ hybridized with S. tuberosum stem and leaf sections to determine its expression in different tissues. 【Result】 The partial cDNA of the StWRKY8-like gene (563 bp) was obtained, which contained a 258 bp open reading frame coding a peptide with 85 amino acids. The StWRKY8-like protein has a classical conserved WRKY domain with a zinc finger motif of C2H2 and belongs to the subgroup II of WRKY family. The amino acid sequence of StWRKY8-like protein was highly close to the other WRKY members of Solanaceous plants and in 98% similarity with StWRKY8 in R. solanacearum. The StWRKY8-like protein is predicted as a hydrosoluble protein with an isoelectric point of 9.1 and half-life period of 5.5 h. It is a non-spherical protein, contains 3 phosphorylation sites and locates in the cytoplasm. The StWRKY8-like gene was upregulated after the R.solanacearum infection, and differentially expressed in susceptible and resistant S. tubosum. The expression of StWRKY8-like in resistant S. tubosum was significantly higher than in susceptible S. tubosum at 6 h post infection. It was mainly expressed in the vascular system of the stem and leaves. 【Conclusion】 StWRKY8-like was a putative transcription factor gene, upregulated at R. solanacearum infection and differentially expressed in susceptible and resistant S. tubosum. It may be involved in the S. tubosum defense against R. solanacearum.

Key words: Solanum tuberosum, Ralstonia solanacearum, transcription factor, StWRKY8-like, gene expression, tissue-specific expression

[1]    李立芹, 黄玉碧, 王西瑶. 马铃薯WRKY6基因的克隆、序列分析与元和表达研究. 草业学报, 2011, 20(2): 177-183.
Li L Q, Huang Y B, Wang X Y. Cloning, sequence analysis and prokaryotic expression of the WRKY6 of potato. Acta Prataculturae Sinica, 2011, 20(2): 177-183. (in Chinese)
[2]    周国鑫. 二化螟取食胁迫下的水稻转录组分析及相关基因 OsHI-LOX的功能解析[D]. 杭州: 浙江大学, 2009.
Zhou G X. Transcriptioal analysis of rice plants infested by rice stripped stem borer Chilo suppressalis (Walker) and the functional characterization of a defense-related gene OsHI-LOX [D]. Hangzhou: Zhejiang University,2009.(in Chinese)
[3]    Zhao J W, Wang J L, An L L, Doerge R W, Chen Z J, Grau C R. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta,2007, 227(1): 13-24.
[4]    徐丽, 陈新, 魏海蓉, 张力思, 王甲威, 宗晓娟, 刘庆忠. 核桃WRKY4基因的克隆与表达分析. 核农学报, 2014, 28(7): 1188-1196.
Xu L, Chen X, Wei H R, Zhang L S, Wang J W, Zong X J, Liu Q Z. Cloning and expression analysis of WRKY4 gene from Juglans regia L.. Journal of Nuclear Agricultural Sciences, 2014, 28(7): 1188-1196. (in Chinese)
[5]    Ulker B, Somssich I E. WRKY transcription factors: From DNA binding towards biological function. Current Opinion in Plant Biology,2004, 7(5): 494-498.
[6]    Ishiguro S, Nakamura K. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5' upstream regions of genes coding for sporamin and beta- amylase from sweet potato. Molecular and General Genetics, 1994, 244(6): 563-571.
[7]    Eulgem T, Rushton P J, Robatzek S, Somssich I E. The WRKY superfamily of plant transcription factors. Trends in Plant Science,2000, 5(5): 199-206.
[8]    彭喜旭, 唐新科, 周平兰, 胡耀军, 邓小波, 王海华. 水稻WRKY80转录调节蛋白基因的分离与表达模式. 中国农业科学, 2013, 46(19): 4035-4043.
Peng X X, Tang X K, Zhou P L, Hu Y J, Deng X B, Wang H H. Isolation and expression patterns of rice WRKY80 transcription regulatory protein gene. Scientia Agricultura Sinica, 2013, 46(19): 4035-4043. (in Chinese)
[9]    Yang P Z, Chen C H, Wang Z P, Fan B F, Chen Z X. A pathogen and salicylic acid induced WRKY DNA-binding activity recognize the elicitor response element of the tobacco class I chitinase gene promoter. The Plant Journal, 1999, 18(2): 141-149.
[10]   Nakane E, Doke K, Kawakita N, Yoshioka H. Elicitation of primary and secondary metabolism during defense in the potato. European Journal of Plant Pathology, 2003, 69(6): 378-384.
[11]   He L Y, Sequeira L, Kelman S L. Characteristics of strains of Pseudomonas solanacearum from China. Plant Disease, 1983,67: 1357-1361.
[12]   Li H, Xue Z, Zhi Y P, Gao G. Clonging and expression analysis of the protease inhibitor StPIa3 gene from potato. Society for Plant Research, 2014, 27(2): 208-215.
[13]   郜刚, 任彩虹, 金黎平, 谢开云, 屈冬玉. 马铃薯非特异性直至转移蛋白基因StLTPa1的克隆和表达. 作物学报, 2008, 34(9): 1510-1517.
Gao G, Ren C H, Jin L P, Xie K Y, Qu D Y. Cloning, expression and characterization of a non-specific lipid transfer protein gene from potato. Acta Agronomica Sinica, 2008, 34(9): 1510-1517. (in Chinese)
[14]   Lingle S E, Dyer J M. Cloning and expression of sucrose synthase-1 cDNA from sugarcane. Journal of Plant Physiology, 2001, 158(1): 129-131.
[15]   Jain M, Kaur N, Tyagi A K, Khurana J P. The auxin responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics,2006,6: 36-46.
[16]   Pfaffl M W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research, 2001, 29(9): 2002-2007.
[17]   Wu Y L, Peng C H, Shen H W. Expression of exon 13 from the ki-67 gene in human cells and tissues by digoxigenin-labelled mRNA in situ hybridization. Chinese Medical Journal,2001, 114(1): 48-53.
[18]   Zhao Y, Liu N, Niu J X. A study of the distribution of apple stem pitting virus in tissues of pear tree using in situ hybridization and in situ RT-PCR. Agricultural Sciences in China, 2010, 2: 217-228.
[19]   Zhang J, Peng Y L, Guo Z J. Constitutive expression of pathogen- inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants. Cell Research, 2008, 18: 508-521.
[20]   Jung H W, Kim K D, Hwang B K. Identification of pathogen responsive regions in the promoter of a pepper lipid transfer protein gene (CALTPI) and the enhanced resistance of the CALTPI transgenic Arabidopsis against pathogen and environmental stresses. Planta, 2005, 221: 361-373.
[21]   Fountain J C, Raruang Y J, Luo M, Brown R L, Guo B Z, Chen Z Y. Potential roals of wrky transcription factors in regulating host defense response during Aspergillus flavus infection of immature maize kernel. Physiological and Molecular Plant Pathology, 2015, 89: 31-40.
[22]   Mosolov V V, Grigoreva L I, Valueva T A. Plant proteinase inhibitors as multifunctional proteins. Applied Biochemistry and Microbiology, 2001, 37(6): 643-650.
[23]   Park C J, Shin R, Park J M, Lee G J, You J S, Paek K H. Induction of pepper cDNA encoding a lipid transfer protein during the resistance response to tobacco mosaic virus. Plant Molecular Biology, 2002, 48: 243-254.
[24]   Jing S J, Zhou X, Song Y, Yu D Q. Heterologous expression of OsWRKY23 gene enhance pathogen defense and dark-induced leaf senescence in Arabidopsis. Plant Growth Regulation, 2009,58(2): 181-190.
[25]   Kim J Y, Gopal R, Kim S Y, Seo C H, Lee H B, Cheong H. PG-2, a potent AMP against pathogenic microbial strains, from potato (Solanum tuberosum L. cv. Gogu Valley) tubers not cytotoxic against human cells. International Journal of Molecular Sciences, 2013, 14(2): 4349-4360.
[26] Chi Y J,Yang Y, Zhou Y, Zhou J, Fan B F,Yu J Q, Chen Z X. Protein-protein interactions in the regulation of WRKY transcription factors. Molecular Plant,2013, 2(6): 287-230.
[27]   Ryu H S, Han M, Lee S K, Cho J I, Ryoo N, Heu S. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response. Plant Cell Report,2006, 25(8): 836-847.
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