Scientia Agricultura Sinica ›› 2014, Vol. 47 ›› Issue (3): 462-472.doi: 10.3864/j.issn.0578-1752.2014.03.006

• PLANT PROTECTION • Previous Articles     Next Articles

Identification and Analysis of Magnaporthe oryzae Avirulence Genes in Liaoning Province

 WANG  Shi-Wei-1, 2 , ZHENG  Wen-Jing-2, ZHAO  Jia-Ming-2, WEI  Song-Hong-1, WANG  Yan-1, ZHAO  Bao-Hai-1, LIU  Zhi-Heng-1   

  1. 1、Plant Protection College, Shenyang Agriculture University, Shenyang 110161;
    2、Liaoning Innovation Center of the Academy of Agriculture Sciences, Shenyang 110161
  • Received:2013-07-10 Online:2014-02-01 Published:2013-10-16

Abstract: 【Objective】The objective of this study is to identify avirulence genes (Avr-genes), which existed in the prevalent fungus of Magnaporthe oryzae, understand the distribution of Avr-genes in the epidemic strains of different regions, and to provide references for rice cultivars distribution.【Method】According to the sequences of 6 Avr-genes which had been cloned and were associated with the rice blast pathogenicity, the primers were designed to amplify the target sequences of the epidemic rice blast fungus in Liaoning Province. The DNA, extracted from the 26 strains of rice blast fungi, was used as a template for PCR amplification. By analyzing the PCR products by AGE (agarose gel electrophoresis) and sequencing, the sequences of base and amino acid for each Avr-gene were examined and compared. Some candidate primers were designed to check out the Avr-gene which had no PCR product.【Result】There was no PCR product when amplified Avr1-CO39, Avr-pia and Avr-pii by the primers, and there was also no PCR product by using the candidate primers, which showed that Avr1-CO39, Avr-pia and Avr-pii didn’t exist in most of the M. oryzae isolated from the main rice growing regions in Liaoning Province. On the contrary, the PCR products of AvrPiz-t, Avr-pik and Avr-pita were detected by AGE, and different genome types showed the 3 genes below were carried by the fungus in different mutated types and rates. AvrPiz-t related to the resistant genes including Pi2, Pi9 and Piz-t was detected in 22 M. oryzae strains, and the sequences of 21 strains were same to which exited in AvrPiz-t. The results of this experiment illustrated that the rice varieties carrying Pi2, Pi9 or Piz-t could have broad-spectrum disease resistance to rice blast fungi. The sequence of No. 16 strain was not the same as others, because it lost a single base C in the position of 192 bp, which caused the frame-shift mutation. The mutation led the AA (amino acid) sequence to terminate in position of 72nd AA, and made the secretory protein lose the function of avirulence. Avr-pik associated to the resistant genes like Pik, Pik-p, Pik-m and Pik-s were detected by AGE. The results showed that all the strains had the target bands. Their sequence showed that there were 4 genotypes of Avr-pik allele in the strains (B, D, F and G), and genotype D which carried by 12 strains could be recognized by rice blast disease resistance genes of Pik and its alleles as Pik-m and Pik-p. The 9 strains which carried genotype B of Avr-pik had been reported before, but its function of virulence had not been tested. The genotype F which exited in two strains was firstly found to be the new allele of Avr-pik, and they appeared in Dandong and Panjin, respectively. The specific point mutation, the 143 (A/G) of the base sequence, was the difference between genotype F and D. Genotype G which was also firstly detected was carried by the remaining 3 strains which only appeared in the area of Xinbin County in Fushun. The difference between genotype G and D was the point mutation of 168 (G/A) in the base sequence, which caused the protein translation early termination, therefore, genotype G lost its avirulent function. According to the AGE results, the same bands of Avr-pita were detected in all the 26 strains, and the sequences were tested and analyzed. The results showed that the genes in 26 strains had 5 genotypes of alleles, and there were several point mutations between the 5 alleles and the Avr-pita sequence, and the changes of the sequences caused the missense mutation. The difference of AA among the 5 genotypes were the 3 point mutation of 83 (D/N), 192 (Y/C) and 207 (K/R), which had been found in a structural domain of Avr-pita. The genotypes of allele all had been reported before. 【Conclusion】 The M. oryzae who carried Avr-pik, Avr-pita and AvrPiz-t distributed widely in rice growing regions of Liaoning Province. Breeding and cultivating the rice varieties carrying the corresponding resistance genes could alleviate the damage of the rice blast.

Key words: Liaoning Province , Magnaporthe oryzae , avirulence gene

[1]雷财林, 凌忠专, 王久林, 蒋琬如. 北方稻区稻瘟病菌生理小种变化与抗病育种策略. 作物杂志, 2000(3): 14-15.

Lei C L, Ling Z Z, Wang J L, Jiang W R. The variation of pathologic races to Magnaporthe grisea and the rice breeding strategy for blast resistance in region of northern China. Agronomial Magazine, 2000(3): 14-15. (in Chinese)

[2]李亚, 刘二明, 戴良英, 李成云, 刘林. 湖南稻瘟病菌群体遗传多样性与病菌致病型的关系. 中国水稻科学, 2007, 21(3): 304-308.

Li Y, Liu E M, Dai L Y, Li C Y, Liu L. Genetic diversity among populations as related to pathotypes for Magnaporthe grisea in Hunan Province. Chinese Journal of Rice Science, 2007, 21(3): 304-308. (in Chinese)

[3]李宏宇, 鲁国东, 王宗华. 稻瘟菌无毒基因研究进展. 中国生物工程杂志, 2003, 23(6): 27-31.

Li H Y, Lu G D, Wang Z H. Avirulence genes of in Magnaporthe grisea. China Biotechnology, 2003, 23(6): 27-31. (in Chinese)

[4]Valent B. Rice blast as a model system for plant pathology. Phytopathology, 1990, 80(1): 33-36.

[5]Flor H H. Current status of the gene-for-gene concept. Annual Review of Phytopathology, 1971, 9: 275-296.

[6]Terauchi R, Yoshida K, Saitoh H, Kanzaki H, Okuyama Y, Fujisaki K, Miya A, Abe A, Tamiru M, Tosa Y. Studying genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions. Australasian Plant Pathology, 2011, 40: 328-334.

[7]Liu J L, Wang X J, Mitchell T, Hu Y J, Liu X L, Dai L Y, Wang G L. Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzae interaction. Molecular Plant Pathology, 2010, 11(3): 419-427.

[8]Valent B, Khang C H. Recent advances in rice blast effector research. Current Opinion in Plant Biology, 2010, 13: 434-441.

[9]张哲, 姜华, 王艳丽, 孙国昌. 稻瘟菌无毒基因研究进展. 遗传, 2011, 33(6): 591-600.

Zhang Z, Jiang H, Wang Y L, Sun G C. Progress on avirulence genes of the rice blast fungus Magnaporthe grisea. Hereditas, 2011, 33(6): 591-600. (in Chinese)

[10]Jia Y L, McAdams S A, Bryan G T, Hershey H P, Valent B. Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. The EMBO Journal, 2000, 19(15): 4004-4014.

[11]Dawkins R, Krebs J R. Arms race between and within species. Proceedings of Royal. Society of London B: Biological Sciences, 1979, 205: 489-511.

[12]Woolhouse M E, Webster J P, Domingo E, Charlesworth B, Levin B  R. Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nature Genetics, 2002, 32: 569-577.

[13]Paterson S, Vogwill T, Buckling A, Benmayor R, Spiers A J, Thomson N R, Quail M, Smith F, Walker D, Libberton B, Fenton A, Hall N, Brockhurst M A. Antagonistic coevolution accelerates molecular evolution. Nature, 2010, 464: 275-278.

[14]Stahl E A, Dwyer G, Mauricio R, Kreitman M, Bergelson J. Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature, 1999, 400(6745): 667-671.

[15]Kanzaki H, Yoshida K, Saitoh H, Fujisaki K, Hirabuchi A, Alaux L, Fournier E, Tharreau D, Terauchi R. Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions. The Plant Journal, 2012, 72: 894-907.

[16]Dai Y T, Jia Y L, Correll J, Wang X Y, Wang Y L. Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae. Fungal Genetics and Biology, 2010, 47: 973-980.

[17]Chuma I, Isobe C, Hotta Y, Ibaragi K, Futamata N, Kusaba M, Yoshida K, Terauchi R, Fujita Y, Nakayashiki H, Valent B, Tosa Y. Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLoS Pathogens, 2011, 7(7): e1002147.

[18]Kasetsomboon T, Ngam S K, Sriwongchai T, Zhou B, Jantasuriyarat  C. Sequence variation of avirulence gene AVR-Pita1 in rice blast fungus, Magnaporthe oryzae. Mycology Progress, 2012, 12: 867-878.

[19]Orbach M J, Farrall L, Sweigard J A, Chumley F G, Valent B. A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta. The Plant Cell, 2000, 12: 2019-2032.

[20]Yoshida K, Saitoh H, Fujisawa S, Kanzaki H, Matsumura H, Yoshida K, Tosa Y, Chuma I, Takano Y, Win J, Kamoun S, Terauchia R. Association genetics reveals three novel avirulence genes from the rice blast fungal pathogen Magnaporthe oryzae. The Plant Cell, 2009, 21: 1573-1591.

[21]王建飞, 鲍永美, 李培富, 张红生. 基于无毒基因序列的稻瘟病菌指纹类型与致病型的关系初探. 中国水稻科学, 2006, 20(1): 109-112.

Wang J F, Bao Y M, Li P F, Zhang H S. Primary study on correlation between pathotypes and DNA fingerprintings based on avirulence gene sequences of rice blast fungus Magnaporthe grisea. Chinese Journal of Rice Science, 2006, 20(1): 109-112. (in Chinese)

[22]兰波, 李湘民, 何烈干. 江西省稻瘟病菌的无毒基因分析. 江西农业大学学报, 2010, 32(2): 271-275.

Lan B, Li X M, He L G. Analysis on avirulence genes of Magnaporthe oryzae Barr. in rice from Jiangxi province. Acta Agriculturae Universitatis Jiangxiensis, 2010, 32(2): 271-275. (in Chinese)

[23]邱福林, 王和和, 陈洁, 庄杰云, Leung H, 程式华, 吴健. 用于水稻突变体大量筛选的DNA微量快速提取法. 中国水稻科学, 2006, 20(3): 329-332.

Qiu F L, Wang H H, Chen J, Zhuang J Y, Leung H, Cheng S H, Wu J. A rapid DNA miniprep extraction method for large-scale rice mut ant screening. Chinese Journal of Rice Science, 2006, 20(3): 329-332. (in Chinese)

[24]Farman M L, Eto Y, Nakao T, Tosa Y, Nakayashiki H, Mayama S, Leong S A. Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Molecular Plant-Microbe Interactions, 2002, 15(1): 6-16.

[25]Tosa Y, Osue J, Eto Y, Oh H S, Nakayashiki H, Mayama S, Leong S A.

Evolution of an avirulence gene, AVR1-CO39,concomitant with the evolution and differentiation of Magnaporthe oryzae. Molecular Plant-Microbe Interactions, 2005, 18(11): 1148-1160.

[26]李祥晓, 王倩, 罗生香, 何云霞, 朱苓华, 周永力, 黎志康. 黑龙江省稻瘟病菌无毒基因分析及抗病种质资源筛选. 作物学报, 2012, 38(12): 2192-2197.

Li X X, Wang Q, Luo S X, He Y X, Zhu L H, Zhou Y L, Li Z K. Analyzing avirulence genes of Magnaporthe oryzae from Heilongjiang province and screening rice germ plasm with resistance to blast fungus. Acta Agronomica Sinica, 2012, 38(12): 2192-2197. (in Chinese)

[27]靳春鹏. 水稻抗瘟基因鉴定及稻瘟病菌无毒基因监测[D]. 长春: 吉林大学, 2009.

Ji C P. Identification of rice blast resistance gene and monitoring of avirulence gene on Magnaporthe grisea[D]. Changchun: Jilin University, 2009. (in Chinese)
[1] LIU RUI, ZHAO YuHan, FU ZhongJu, GU XinYi, WANG YanXia, JIN XueHui, YANG Ying, WU WeiHuai, ZHANG YaLing. Distribution and Variation of PWL Gene Family in Rice Magnaporthe oryzae from Heilongjiang Province and Hainan Province [J]. Scientia Agricultura Sinica, 2023, 56(2): 264-274.
[2] WANG WenJuan,SU Jing,CHEN Shen,YANG JianYuan,CHEN KaiLing,FENG AiQing,WANG CongYing,FENG JinQi,CHEN Bing,ZHU XiaoYuan. Pathogenicity and Avirulence Genes Variation of Magnaporthe oryzae from a Rice Variety Meixiangzhan 2 in Guangdong Province [J]. Scientia Agricultura Sinica, 2022, 55(7): 1346-1358.
[3] WU YunYu,XIAO Ning,YU Ling,CAI Yue,PAN CunHong,LI YuHong,ZHANG XiaoXiang,HUANG NianSheng,JI HongJuan,DAI ZhengYuan,LI AiHong. Construction and Analysis of Broad-Spectrum Resistance Gene Combination Pattern for Japonica Rice in Lower Region of the Yangtze River, China [J]. Scientia Agricultura Sinica, 2021, 54(9): 1881-1893.
[4] GONG Liang,JIN DanDan,NIU ShiWei,WANG Na,XU JiaYi,SUI ShiJiang. Analysis of Chemical Fertilizer Application Reduction Potential for Paddy Rice in Liaoning Province [J]. Scientia Agricultura Sinica, 2021, 54(9): 1926-1936.
[5] MENG Feng,ZHANG YaLing,JIN XueHui,ZHANG XiaoYu,JIANG Jun. Detection and Analysis of Magnaporthe oryzae Avirulence Genes AVR-Pib, AVR-Pik and AvrPiz-t in Heilongjiang Province [J]. Scientia Agricultura Sinica, 2019, 52(23): 4262-4273.
[6] REN ShiLong, BAI Hui, WANG yongFang, QUAN JianZhang, DONG ZhiPing, LI ZhiYong, XING JiHong. Identification and Analysis of Magnaporthe oryzae of Foxtail Millet Avirulence Genes [J]. Scientia Agricultura Sinica, 2018, 51(6): 1079-1088.
[7] WANG WenJuan,SU Jing,YANG JianYuan,WEI XiaoYan,CHEN KaiLing,CHEN Zhen,CHEN Shen,ZHU XiaoYuan. Analysis of Magnaporthe oryzae Avirulent Genes in the Infected Hybrid Rice Combinations Derived from a Sterile Line of Guang 8 A [J]. Scientia Agricultura Sinica, 2018, 51(24): 4633-4646.
[8] WANG Jia-feng, LIU Hao, WANG Hui, CHEN Zhi-qiang . Screening of Putative Proteins That are Interacted with NBS-LRR Protein Pik-h by the Yeast Two-Hybrid System [J]. Scientia Agricultura Sinica, 2016, 49(3): 482-490.
[9] YUE Xiao-feng, QUE Ya-wei, WANG Zheng-yi. Analysis of RNA-Seq-Based Expression Profiles of Δznf1 Mutants in Magnaporthe oryzae [J]. Scientia Agricultura Sinica, 2016, 49(17): 3347-3358.
[10] GE Shao-Bin, LIU Min, CAI Kun-Zheng, CAI Yi-Xia, LUO Shi-Ming. Physiological Mechanism of Silicon-Enhanced Rice Blast Resistance [J]. Scientia Agricultura Sinica, 2014, 47(2): 240-251.
[11] ZHANG Yue-Juan, ZHAO Ting-Chang, YANG Yu-Wen. Screening of the Interactive Proteins of Avirulent Proteins AvrPto or AvrPtoB in Susceptible Tomato Cultivar Zhongshusihao by Yeast Two-Hybrid System  [J]. Scientia Agricultura Sinica, 2011, 44(23): 4939-4944.
[12] . Recent Progress on Molecular Mapping and Cloning of Blast Resistance Genes in Rice (Oryza sativa L.)
[J]. Scientia Agricultura Sinica, 2009, 42(5): 1601-1615 .
[13] SHEN Ying1, LI Cheng-yun2. Current Research Status and Future Prospects of Genetic Diversity of Magnaporthe grisea Fungus [J]. Scientia Agricultura Sinica, 2007, 40(增刊): 3100-3106.
[14] ,,,,,,. Virulence Variation in Sexual Progeny and Composition of Avirulence Genes from the Cross CH63 and TH16 of Magnaporthe Grisea [J]. Scientia Agricultura Sinica, 2005, 38(12): 2428-2433 .
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!