Scientia Agricultura Sinica ›› 2011, Vol. 44 ›› Issue (22): 4593-4599.doi: 10.3864/j.issn.0578-1752.2011.22.005

• PLANT PROTECTION • Previous Articles     Next Articles

Development of a SSR Molecular Marker for Puccinia graminis f. sp. tritici

 WANG  Xi, LIU  Tai-Guo, XIANG  Wen-Sheng, CHEN  Wan-Quan   

  1. 1.中国农业科学院植物保护研究所植物病虫害生物学国家重点实验室,北京 100193
    2.东北农业大学生命科学学院,哈尔滨 150030
  • Received:2011-03-04 Online:2011-11-15 Published:2011-05-20

Abstract: 【Objective】The objective of this study is to build a simple, quick and accurate molecular technique to detect Puccinia graminis f. sp. tritici and forecast this destructive disease. 【Method】A microsatellite-enriched genomic library of Pgt was constructed by using the method of FIASCO. Based on the sequence of Pgt microsatellite, pairs of specific SSR primers were developed and screened. 【Result】The primer Pgtfssr1 (f/r) generated a polymorphic pattern displaying a 395 bp DNA fragment specific for Pgt, whereas no DNA fragment was obtained in other 24 non-target wheat fungal pathogens. The existence of specific DNA fragment was detected in the infected wheat tissues at 30 h post-inoculation, and the sensitivity of this molecular marker was Pgt DNA template of 1 ng•μL-1.【Conclusion】A specific SSR marker for the detection of wheat stem rust has been successfully developed, which could be used for the early diagnosis and forecast of wheat stem rust.

Key words: Puccinia graminis f. sp. tritici, microsatellite marker, FIASCO, molecular detection

[1]Schlötterer C, Tautz D. Slippage synthsis of simple sequence DNA. Nucleic Acids Research, 1992, 20(2): 211-215.

[2]徐静静, 蔺  宇, 朱振东. 植物病原菌SSR标记开发与利用. 植物保护, 2008, 34(1): 14-21.

Xu J J, Lin Y, Zhu Z D. Development and applications of SSR markers in plant pathogens. Plant Protection, 2008, 34(1): 14-21. (in Chinese)

[3]Jarne P, Lagoda P J L. Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution, 1996, 11(10): 424-429.

[4]曹远银, 陈万权. 小麦秆锈菌生理小种鉴别寄主及命名方法的演变. 麦类作物学报, 2010, 30(1): 167-172.

Cao Y Y, Chen W Q. Stepwise shift of differential hosts and racial designation of Puccinia graminis f. sp. tritici. Journal of Triticeae Crops, 2010, 30(1): 167-172. (in Chinese)

[5]Njau P N, Wanyera R, Macharia G K, Macharia J, Singh R, Keller B. Resistance in Kenyan bread wheat to recent eastern African isolate of stem rust, Puccinia graminis f. sp. tritici, Ug99. Journal of Plant Breeding and Crop Science, 2009, 1(2): 22-27.

[6]Jin Y, Singh R P. Resistance in U.S. wheat to recent eastern African isolates of Puccinia graminis f. sp. tritici with virulence to resistance gene Sr31. Plant Disease, 2006, 90(4): 476-480.

[7]Singh R P, Hodson D P, Jin Y, Huerta-Espino J, Kinyua M G, Wanyera R, Njau P, Ward R W. Current status, likely migration and strategies to mitigate the threat to wheat production from race Ug99 (TTKS) of stem rust pathogen. CAB Reviews: Perspectives Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 2006, 1(54): 1-13.

[8]宋维富, 辛文利, 李集临, 曹远银, 张春利. 中国小麦秆锈病研究进展. 黑龙江农业科学, 2010(3): 112-115.

Song W F, Xin W L, Li J L, Cao Y Y, Zhang C L. Research of Puccinia graminis f. sp. tritici in China. Heilongjiang Agricultural Sciences, 2010(3): 112-115. (in Chinese)

[9]韩建东, 曹远银, 孙仲桂. 2007-2008 年我国小麦秆锈菌小种种群结构及其对Ug99抗性新种质的毒性分析. 麦类作物学报, 2010, 30(1): 163-166.

Han J D, Cao Y Y, Sun Z G. Race dynamics of Puccinia graminis f. sp. tritici in China and the virulence on CIMMYT wheat germplasm resistant to Ug99. Journal of Triticeae Crops, 2010, 30(1): 163-166. (in Chinese)

[10]Sirjusingh C, Kohn L M. Characterization of microsatellites in the fungal plant pathogen, Sclerotinia sclerotiorum. Molecular Ecology Notes, 2001, 1: 267-269.

[11]Karagyozov L, Kalcheva I D, Chapman V M. Construction of random small insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Research, 1993, 21(16): 3911-3912.

[12]Kandpal R P, Kandpal G, Weissman S M. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proceedings of the National Academy of Sciences of the United States of America, 1994, 91: 88-92.

[13]Ostrander E A, Jong P M, Rine J, Duyk G. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proceedings of the National Academy of Sciences of the United States of America, 1992, 89: 3419-3423.

[14]Hunter G C, Cortinas M N, Wingfield B D, Crous P W, Wingfield M J. Development of polymorphic microsatellite markers for the Eucalyptus leaf pathogen Mycosphaerella nubilosa. Molecular Ecology Notes, 2006, 6: 900-903.

[15]Ramsay L, Macaulay M, Ivanissevich S D, Maclean K, Cardle L, Fuller J, Edwards K J, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R. A simple sequence repeat-based linkage map of barley. Genetics Society of America, 2000, 156: 1997-2005.

[16]Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation: a review. Molecular Ecology, 2002, 11: 1-16.

[17]Li C D, Rossnagel B G, Scoles G J. The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theoretical and Applied Genetics, 2000, 101: 1259-1268.

[18]曹丽华, 徐世昌, 陈万权, 刘太国, 蔺瑞明. 小麦叶锈菌的特异性分子诊断检测技术. 植物保护学报, 2007, 34(6): 561-566.

Cao L H, Xu S C, Chen W Q, Liu T G, Lin R M. Molecular diagnosis and detection of Puccinia triticina in China. Acta Phytophylacica Sinica, 2007, 34(6): 561-566. (in Chinese)

[19]Cao L H, Xu S C, Lin R M, Liu T G, Chen W Q. Early molecular diagnosis and detection of Puccinia striiformis f. sp. tritici in China. Letters in Applied Microbiology, 2008, 46: 501-506.

[20]Enjalbert J, Duan X, Giraud T, Vautrin D, de Vallavielle-Pope C, Solignac M. Isolation of twelve microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Puccinia striiformis f. sp. tritici. Molecular Ecology Notes, 2002, 2: 563-565.

[21]Duan X, Enjalbert J, Vautrin D, Solignac M, Giraud T. Isolation of 12 microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Puccinia triticina. Molecular Ecology Notes, 2003, 3: 65-67.

[22]Szabo L J. Development of simple sequence repeat markers for the plant pathogenic rust fungus, Puccinia graminis. Molecular Ecology Notes, 2007, 7: 92-94.

[23]Zambino P J. Dry grinding at near-ambient temperatures for extracting DNA from rust and other fungal spores. Biotechniques, 2002, 33(1): 1-3.

[24]Vos P, Hogers R, Bleeker M, Reijans M, Van De Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23(21): 4407-4414.

[25]匡刚桥, 刘  臻, 鲁双庆, 刘红玉, 张建社, 唐建洲. FIASCO法筛选鳜鱼微卫星标记. 中国水产科学, 2007, 14(4): 608-614.

Kuang G Q, Liu Z, Lu S Q, Liu H Y, Zhang J S, Tang J Z. Microsatellite markers development in Siniperca. Journal of Fishery Sciences of China, 2007, 14(4): 608-614. (in Chinese)

[26]Shen F J, Phill W, Zhang Z H, Zhang A J, Stephanie S, Steve J K, Yue B S. Enrichment of giant panda microsatellite markers using dynal magnet beads. Acta Genetica Sinica, 2005, 32(5): 457-462.

[27]Nunome T, Negoro S, Miyatake K, Yamaguchi H, Fukuoka H. A Protocol for the construction of microsatellite enriched genomic library. Plant Molecular Biology Reporter, 2006, 24: 305-312.

[28]Wang X J, Zheng W M, Buchenauer H, Zhao J, Han Q M, Huang L L, Kang Z S. The development of a PCR-based method for detecting Puccinia striiformis latent infections in wheat leaves. European Journal of Plant Pathology, 2008, 120: 241-247.
[1] GUAN FangNian,LONG Li,YAO FangJie,WANG YuQi,JIANG QianTao,KANG HouYang,JIANG YunFeng,LI Wei,DENG Mei,LI Hao,CHEN GuoYue. Evaluation of Resistance to Stripe Rust and Molecular Detection of Important Known Yr Gene(s) of 152 Chinese Wheat Landraces from the Huang-huai-hai [J]. Scientia Agricultura Sinica, 2020, 53(18): 3629-3637.
[2] HUANG Liang, LIU TaiGuo, XIAO XingZhi, QU ChunYan, LIU Bo, GAO Li, LUO PeiGao, CHEN WanQuan. Evaluation of Stripe Rust Resistance and Molecular Detection of Yr Genes of 79 Wheat Varieties (Lines) in China [J]. Scientia Agricultura Sinica, 2017, 50(16): 3122-3134.
[3] GAO Shi-gang, ZENG Rong, XU Li-hui, LUO Jin-yan, CHEN Lei, DAI Fu-ming. Triplex PCR Detection for Corynespora cassiicola,Colletotrichum orbiculare and Pseudomonas syringae pv. lachrymans [J]. Scientia Agricultura Sinica, 2016, 49(16): 3119-3129.
[4] MU Min, SHU Na, WANG Shuai, GUO Li-xue, FAN Wei-li, YIN Zu-jun, WANG Jun-juan, WANG De-long, YE Wu-wei. The Function Expression of Salt-Tolerant Yeast Gene Halotolerance ( HAL1 ) in Cotton [J]. Scientia Agricultura Sinica, 2016, 49(14): 2651-2661.
[5] SHI Pei-Qiong-1, YANG Mao-Fa-1, 吕Zhao-Yun-1 , LI Shang-Wei-1, LIAO Qi-Rong-1, SHANG Sheng-Hua-2, XU Jin-1, WU Yi-Bei-1. Genetic Diversity of Helicoverpa assulta (Lepidoptera: Noctuidae) in Guizhou Province [J]. Scientia Agricultura Sinica, 2014, 47(9): 1836-1846.
[6] WU Xian-xin, LI Tian-ya, CHEN Si, WANG Guan-qin, CAO Yuan-yin, MA Shi-liang, LI Ming-ju. Stem Rust Resistance Evaluation and Ug99-Resistance Gene Detection of 139 Wheat Cultivars [J]. Scientia Agricultura Sinica, 2014, 47(23): 4618-4626.
[7] LU Zhao-Yun , YANG Mao-Fa, SHI Pei-Qiong, LI Shang-Wei, LIAO Qi-Rong, SHANG Sheng-Hua. Genetic Diversity Analysis of Myzus persicae (Sulzer) in Guizhou Province [J]. Scientia Agricultura Sinica, 2013, 46(13): 2685-2694.
[8] FENG Min, WANG Chun-Xiao, LIU Yan-Lin. Genetic Diversity of Saccharomyces cerevisiae Strains Revealed by Microsatellite Sequence Polymorphism [J]. Scientia Agricultura Sinica, 2012, 45(12): 2537-2543.
[9] LING Fei,ZHANG Hao,CAI Geng-yuan,CHEN Yao-sheng,LI Jia-qi,WANG Chong. Mapping Quantitative Trait Loci Associated with Live Traits in an F2 Lantang x Landrace Resource Population on SSC 1, 4 and 8 [J]. Scientia Agricultura Sinica, 2011, 44(8): 1745-1752 .
[10] LIU Yong-qing,CAO Meng-ji,WANG Xue-feng,LI Zhong-an,TANG Ke-zhi,ZHOU Chang-yong
. Rapid Molecular Detection Technologies of Citrus tristeza virus in Plant Tissues and Single Aphid
[J]. Scientia Agricultura Sinica, 2010, 43(7): 1397-1403 .
[11] WANG Nan,WANG Jian,YIN Dan-han,GAO Guan-peng,WANG Wei . Triplex PCR Detection of Botrytis cinerea, Colletotrichum gloeosporioides and Verticillium dahliae in Infected Strawberry Plant Tissues#br# [J]. Scientia Agricultura Sinica, 2010, 43(21): 4392-4400 .
[12] ANIWASHI J K,HAN Ye-dong,LI Qi-fa,YIDULA P N E,XIE Zhuang. Polymorphic Analysis on Microsatellite Marker and Its Growth Index Association of Bashbay Sheep
[J]. Scientia Agricultura Sinica, 2010, 43(16): 3425-3432 .
[13] WAN Xuan-wu,LIU Ying-hong,ZHANG Bin,ZHOU Hao-dong
. Genetic Differentiation Among Poupulations of the Oriental Fruit Fly Bactrocera dorsalis (Hendel) in Chongqing Based on Microsatellite Markers #br# [J]. Scientia Agricultura Sinica, 2010, 43(13): 2688-2696 .
[14] ZHANG Yuan-yuan,SHU Ai-ping,CAO Gui-lan,HAN Long-zhi
.

Fingerprinting Analysis of Indica Rice Landraces from Different Provinces of China

[J]. Scientia Agricultura Sinica, 2010, 43(11): 2189-2196 .
[15] LI Chun-xin,XU Wei-gang,WANG Gen-song,HU Lin,ZHANG Lei,ZHANG Jian-zhou,DONG Hai-bin
. Molecular Marker Mapping and Genetic Analysis of a Novel Powdery Mildew Resistance Gene PmHNK
[J]. Scientia Agricultura Sinica, 2009, 42(8): 2771-2777 .
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!