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Physicochemical properties and antibacterial mechanism of theabrownins prepared from different catechins catalyzed by polyphenol oxidase and peroxidase
CHEN Xiao-qiang, LIU Jia-yan, HUANG Xue-jun, WEI Yan-an, SHAO Rui-xiang, CHEN Ting-ting, XIE Jian-chun
2023, 22 (9): 2905-2916.   DOI: 10.1016/j.jia.2023.07.004
Abstract242)      PDF in ScienceDirect      

Theabrownins (TBs) are the characteristic functional and quality components of dark teas such as Pu’er tea and Chin-brick tea.  TBs are a class of water-soluble brown polymers with multi-molecular weight distribution produced by the oxidative polymerisation of tea polyphenols during the fermentation process of dark tea, both enzymatically and non-enzymatically.  TBs have been extracted and purified from dark tea all the time, but the obtained TBs contain heterogeneous components such as polysaccharides and caffeine in the bound state, which are difficult to remove.  The isolation and purification process was tedious and required the use of organic solvents, which made it difficult to industrialise TBs.  In this study, epigallocatechin (EGC), epigallocatechin gallate (EGCG), epigallocatechin gallate (ECG), EGC/EGCG (mass ratio 1:1), EGCG/ECG (mass ratio 1:1), EGC/ECG (mass ratio 1:1) and EGC/EGCG/ECG (mass ratio 1:1:1) as substrates and catalyzed by polyphenol oxidase (PPO) and peroxidase (POD) in turn to produce TBs, named TBs-dE-1, TBs-dE-2, TBs-dE-3, TBs-dE-4, TBs-dE-5, TBs-dE-6 and TBs-dE-7.  The physicochemical properties and the antibacterial activity and mechanism of TBs-dE-1–7 were investigated.  Sensory and colour difference measurements showed that all seven tea browning samples showed varying degrees of brownish hue.  Zeta potential in aqueous solutions at pH 3.0–9.0 indicated that TBs-dE-1–7 was negatively charged and the potential increased with increasing pH.  The characteristic absorption peaks of TBs-dE-1–7 were observed at 208 and 274 nm by UV-visible (UV-vis) scanning spectroscopy.  Fourier transform infrared (FT-IR) spectra indicated that they were phenolic compounds.  TBs-dE-1–7 showed significant inhibition of Escherichia coli DH5α (Ecoli DH5α).  TBs-dE-3 showed the strongest inhibitory effect with minimum inhibitory concentration (MIC) of 1.25 mg mL–1 and MBC of 10 mg mL–1, followed by TBs-dE-5 and TBs-dE-6.  These three TBs-dEs were selected to further investigate their inhibition mechanism.  The TBs-dE was found to damage the extracellular membrane of Ecoli DH5α, causing leakage of contents, and increase intracellular reactive oxygen content, resulting in abnormal cell metabolism due to oxidative stress.  The results of the study provide a theoretical basis for the industrial preparation and product development of TBs.

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Ensemble learning prediction of soybean yields in China based on meteorological data
LI Qian-chuan, XU Shi-wei, ZHUANG Jia-yu, LIU Jia-jia, ZHOU Yi, ZHANG Ze-xi
2023, 22 (6): 1909-1927.   DOI: 10.1016/j.jia.2023.02.011
Abstract208)      PDF in ScienceDirect      

The accurate prediction of soybean yield is of great significance for agricultural production, monitoring and early warning.  Although previous studies have used machine learning algorithms to predict soybean yield based on meteorological data, it is not clear how different models can be used to effectively separate soybean meteorological yield from soybean yield in various regions.  In addition, comprehensively integrating the advantages of various machine learning algorithms to improve the prediction accuracy through ensemble learning algorithms has not been studied in depth.  This study used and analyzed various daily meteorological data and soybean yield data from 173 county-level administrative regions and meteorological stations in two principal soybean planting areas in China (Northeast China and the Huang–Huai region), covering 34 years.  Three effective machine learning algorithms (K-nearest neighbor, random forest, and support vector regression) were adopted as the base-models to establish a high-precision and highly-reliable soybean meteorological yield prediction model based on the stacking ensemble learning framework.  The model’s generalizability was further improved through 5-fold cross-validation, and the model was optimized by principal component analysis and hyperparametric optimization.  The accuracy of the model was evaluated by using the five-year sliding prediction and four regression indicators of the 173 counties, which showed that the stacking model has higher accuracy and stronger robustness.  The 5-year sliding estimations of soybean yield based on the stacking model in 173 counties showed that the prediction effect can reflect the spatiotemporal distribution of soybean yield in detail, and the mean absolute percentage error (MAPE) was less than 5%.  The stacking prediction model of soybean meteorological yield provides a new approach for accurately predicting soybean yield.

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Maize straw application as an interlayer improves organic carbon and total nitrogen concentrations in the soil profile: A four-year experiment in a saline soil
CHANG Fang-di, WANG Xi-quan, SONG Jia-shen, ZHANG Hong-yuan, YU Ru, WANG Jing, LIU Jian, WANG Shang, JI Hong-jie, LI Yu-yi
2023, 22 (6): 1870-1882.   DOI: 10.1016/j.jia.2023.02.025
Abstract220)      PDF in ScienceDirect      

Soil salinization is a critical environmental issue restricting agricultural production.  Deep return of straw to the soil as an interlayer (at 40 cm depth) has been a popular practice to alleviate salt stress.  However, the legacy effects of straw added as an interlayer at different rates on soil organic carbon (SOC) and total nitrogen (TN) in saline soils still remain inconclusive.  Therefore, a four-year (2015–2018) field experiment was conducted with four levels (i.e., 0, 6, 12 and 18 Mg ha–1) of straw returned as an interlayer.  Compared with no straw interlayer (CK), straw addition increased SOC concentration by 14–32 and 11–57% in the 20–40 and 40–60 cm soil layers, respectively.  The increases in soil TN concentration (8–22 and 6–34% in the 20–40 and 40–60 cm soil layers, respectively) were lower than that for SOC concentration, which led to increased soil C:N ratio in the 20–60 cm soil depth.  Increases in SOC and TN concentrations in the 20–60 cm soil layer with straw addition led to a decrease in stratification ratios (0–20 cm:20–60 cm), which promoted uniform distributions of SOC and TN in the soil profile.  Increases in SOC and TN concentrations were associated with soil salinity and moisture regulation and improved sunflower yield.  Generally, compared with other treatments, the application of 12 Mg ha–1 straw had higher SOC, TN and C:N ratio, and lower soil stratification ratio in the 2015–2017 period.  The results highlighted that legacy effects of straw application as an interlayer were maintained for at least four years, and demonstrated that deep soil straw application had a great potential for improving subsoil fertility in salt-affected soils.

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The effects of soil properties, cropping systems and geographic location on soil prokaryotic communities in four maize production regions across China 
TIAN Xue-liang, LIU Jia-jia, LIU Quan-cheng, XIA Xin-yao, PENG Yong, Alejandra I. HUERTA, YAN Jian-bing, LI Hui, LIU Wen-de
2022, 21 (7): 2145-2157.   DOI: 10.1016/S2095-3119(21)63772-3
Abstract225)      PDF in ScienceDirect      
The diversity of prokaryotic communities in soil is shaped by both biotic and abiotic factors.  However, little is known about the major factors shaping soil prokaryotic communities at a large scale in agroecosystems.  To this end, we undertook a study to investigate the impact of maize production cropping systems, soil properties and geographic location (latitude and longitude) on soil prokaryotic communities using metagenomic techniques, across four distinct maize production regions in China.  Across all study sites, the dominant prokaryotes in soil were Alphaproteobacteria, Gammaproteobacteria, Betaproteobacteria, Gemmatimonadetes, Acidobacteria, and Actinobacteria.  Non-metric multidimensional scaling revealed that prokaryotic communities clustered into the respective maize cropping systems in which they resided.  Redundancy analysis (RDA) showed that soil properties especially pH, geographic location and cropping system jointly determined the diversity of the prokaryotic communities.  The functional genes of soil prokaryotes from these samples were chiefly influenced by latitude, soil pH and cropping system, as revealed by RDA analysis.  The abundance of genes in some metabolic pathways, such as genes involved in microbe–microbe interactions, degradation of aromatic compounds, carbon fixation pathways in prokaryotes and microbial metabolism were markedly different across the four maize production regions.  Our study indicated that the combination of soil pH, cropping system and geographic location significantly influenced the prokaryotic community and the functional genes of these microbes.  This work contributes to a deeper understanding of the composition and function of the soil prokaryotic community across large-scale production systems such as maize.

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ICT-based agricultural advisory services and nitrogen management practices: A case study of wheat production in China
DING Ji-ping, LI Jing-han, LIU Jia-huan, ZHANG Wei-feng, JIA Xiang-ping
2022, 21 (6): 1799-1811.   DOI: 10.1016/S2095-3119(21)63859-5
Abstract231)      PDF in ScienceDirect      
Excessive use of nitrogen fertilizer in China and its adverse effects on agricultural production have been a national and global concern. In addition to massive public initiatives to promote sustainable farm practices, grass-rooted innovations are emerging in the niche, many of which take the forms of information and communication technologies (ICT) and digital services. This study examines the effects of ICT-based extension services provided by an entrepreneurial startup on adopting sustainable farming practices. We found no significant reduction in N-fertilizer use for wheat production. But the ICT-based services promoted farmers to adapt N-fertilizer use towards site-specific management. The business model of the entrepreneurial venture faces great challenges in becoming participatory and financially sustainable.


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Phenotype and mechanism analysis of plant dwarfing in pear regulated by abscisic acid
LIU Jian-long, ZHANG Chen-xiao, LI Tong-tong, LIANG Cheng-lin, YANG Ying-jie, LI Ding-Li, CUI Zhen-hua, WANG Ran, SONG Jian-kun
2022, 21 (5): 1346-1356.   DOI: 10.1016/S2095-3119(21)63786-3
Abstract170)      PDF in ScienceDirect      
Close planting of dwarf varieties is currently the main cultivation direction for pear trees, and the screening of excellent dwarf varieties is an important goal for breeders.  In this study, the dwarfing pear variety ‘601D’ and its vigorous mutant ‘601T’ were used to show their biological characteristics and further explore the dwarfing mechanism in ‘601D’.  The biological characteristics showed that ‘601D’ had a shorter internode length, a shorter and more compact tree body, thicker and broader leaves, lower stomata density, larger stomata size (dimension), and higher photosynthetic capacity.  The biological characteristics of ‘601T’ showed notable contrasts.  The results of endogenous hormone tests indicated that the contents of abscisic acid (ABA), ABA-glucosyl ester, and GA4 were higher in ‘601D’, but the trans-zeatin content was lower.  By transcriptomic analysis, significant differences were found in the biosynthetic and metabolic pathways of ABA.  Related transcription factors such as bHLH, WRKY, and homeobox also participated in the regulation of plant dwarfing.  We therefore examined three hormones with obvious differences with ‘601T’, and found that only ABA could induce ‘601T’ to return to a dwarfing plant phenotype.  Therefore, we conclude that the dwarfing of ‘601D’ is caused by an excessive accumulation of ABA.  This study provides a new theoretical basis for breeding dwarf varieties.
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Field mold stress induced catabolism of storage reserves in soybean seed and the resulting deterioration of seed quality in the field
DENG Jun-cai, LI Xiao-man, XIAO Xin-li, WU Hai-jun, YANG Cai-qiong, LONG Xi-yang, ZHANG Qi-hui, Nasir Iqbal, WANG Xiao-chun, YONG Tai-wen, DU Jun-bo, YANG Feng, LIU Wei-guo, ZHANG Jing, WU Xiao-ling, WU Yu-shan, YANG Wen-yu, LIU Jiang
2022, 21 (2): 336-350.   DOI: 10.1016/S2095-3119(20)63594-8
Abstract204)      PDF in ScienceDirect      
Excessive rainfall provides a favorable condition for field mold infection of plants, which triggers field mold (FM) stress.  If FM stress occurs during the late maturation stage of soybean seed, it negatively affects seed yield and quality.  To investigate the responses of soybean seed against FM stress and identify the underlying biochemical pathways involved, a greenhouse was equipped with an artificial rain producing system to allow the induction of mold growth on soybean seed.  The induced quality changes and stress responses were revealed on the levels of both transcriptome and metabolome.  The results showed that soybean seeds produced under FM stress conditions had an abnormal and inferior appearance, and also contained less storage reserves, such as protein and polysaccharide.  Transcriptional analysis demonstrated that genes involved in amino acid metabolism, glycolysis, tricarboxylic acid, β-oxidation of fatty acids, and isoflavone biosynthesis were induced by FM stress.  These results were supported by a multiple metabolic analysis which exhibited increases in the concentrations of a variety of amino acids, sugars, organic acids, and isoflavones, as well as reductions of several fatty acids.  Reprogramming of these metabolic pathways mobilized and consumed stored protein, sugar and fatty acid reserves in the soybean seed in order to meet the energy and substrate demand on the defense system, but led to deterioration of seed quality.  In general, FM stress induced catabolism of storage reserves and diminished the quality of soybean seed in the field.  This study provides a more profound insight into seed deterioration caused by FM stress.
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Apparent variations in nitrogen runoff and its uptake in paddy rice under straw incorporation
Muhammad Amjad BASHIR, ZHAI Li-mei, WANG Hong-yuan, LIU Jian, Qurat-Ul-Ain RAZA, GENG Yu-cong, Abdur REHIM, LIU Hong-bin
2022, 21 (11): 3356-3367.   DOI: 10.1016/j.jia.2022.08.062
Abstract216)      PDF in ScienceDirect      

Straw incorporation is a widespread practice to promote agricultural sustainability.  However, the potential effects of straw incorporation with the prolonged time on nitrogen (N) runoff loss from paddy fields are not well studied.  The current study addresses the knowledge gap by assessing the effects of straw incorporation on the processes influencing N runoff patterns and its impacts on crop yield, N uptake, total N (TN), and soil organic matter (SOM).  We conducted field experiments with rice (Oryza sativa L.)–wheat (Triticum aestivum L.) rotation, rice–tobacco (Nicotiana tabacum L.) rotation, and double-rice cropping in subtropical China from 2008 to 2012.  Each rotation had three N treatments: zero N fertilization (CK), chemical N fertilization (CF), and chemical N fertilization combined with straw incorporation (CFS).  The treatment effects were assessed on TN runoff loss, crop yield, N uptake, soil TN stock, and SOM.  Results showed that TN runoff was reduced by substituting part of the chemical N fertilizer with straw N in the double rice rotation, while crop N uptake was significantly (P<0.05) decreased due to the lower bioavailability of straw N.  In contrast, in both rice–wheat and rice–tobacco rotations, TN runoff in CFS was increased by 0.9–20.2% in the short term when straw N was applied in addition to chemical N, compared to CF.  However, TN runoff was reduced by 2.3–19.3% after three years of straw incorporation, suggesting the long-term benefits of straw incorporation on TN loss reduction.  Meanwhile, crop N uptake was increased by 0.8–37.3% in the CFS of both rotations.  This study demonstrates the challenges in reducing N runoff loss while improving soil fertility by straw incorporation over the short term but highlights the potential of long-term straw incorporation to reduce N loss and improve soil productivity.

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Expression profiles of Cry1Ab protein and its insecticidal efficacy against the invasive fall armyworm for Chinese domestic GM maize DBN9936
LIANG Jin-gang, ZHANG Dan-dan, LI Dong-yang, ZHAO Sheng-yuan, WANG Chen-yao, XIAO Yu-tao, XU Dong, YANG Yi-zhong, LI Guo-ping, WANG Li-li, GAO Yu, YANG Xue-qing, YUAN Hai-bin, LIU Jian, ZHANG Xiu-jie, WU Kong-ming
2021, 20 (3): 792-803.   DOI: 10.1016/S2095-3119(20)63475-X
Abstract164)      PDF in ScienceDirect      
The fall armyworm (FAW) Spodoptera frugiperda, which originated in the Americas, is advancing across China and threatening the nation’s maize crops.  Currently, one widely used tool for its control is genetically modified (GM) Bacillus thuringiensis (Bt) maize.  Sufficient content of Bt protein in appropriate plant parts is crucial for enhancing resistance against insect pests.  In this study, we conducted a systematic investigation of Cry1Ab levels in Chinese domestic GM maize DBN9936, which has recently obtained a biosafety certificate, and evaluated its efficacy against FAW.  Quantification of expression levels of Cry1Ab, via ELISA, indicated a spatio-temporal dynamic, with significant variation of mean Cry1Ab, ranging from 0.76 to 8.48 μg g–1 FW with the Cry1Ab protein level ranked as: V6–V8 leaf>R1 leaf>R4 leaf>R1 silk>VT tassel>R4 kernel.  Among the nine locations, the Cry1Ab levels in DBN9936 of the Xinxiang, Langfang, and Harbin fields were significantly lower than those from Wuhan and Shenyang, and were slightly, but not significantly lower than those from the other four fields.  Furthermore, the artificial diet–Cry1Ab mixture and plant tissue feeding bioassays revealed that DBN9936 has high efficacy against FAW.  The insecticidal efficacy of different tissues against FAW larvae reached 34–100% with a descending order of lethality as follows: VT leaf>R4 leaf>R1 husk>R1 silk>VT tassel>R4 kernel.  Taken together, our results showed that Bt-Cry1Ab maize DBN9936 has potential as a promising strategy to manage FAW.
 
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Fertility and biochemical activity in sodic soils 17 years after reclamation with flue gas desulfurization gypsum
ZHAO Yong-gan, WANG Shu-juan, LIU Jia, ZHUO Yu-qun, LI Yan, ZHANG Wen-chao
2021, 20 (12): 3312-3321.   DOI: 10.1016/S2095-3119(20)63446-3
Abstract111)      PDF in ScienceDirect      
Previous studies have mainly focused on changes in soil physical and chemical properties to evaluate the reclamation of sodic soils using flue gas desulfurization (FGD) gypsum.  However, information on the effects of this reclamation method on microbial-based indicators of soil quality is limited, particularly after many years of FGD gypsum application.  This study aimed to investigate the long-term effects of FGD gypsum on soil organic carbon (SOC), nutrients, microbial biomass and enzyme activity.  Data were collected from soils of three exchangeable sodium percentage (ESP) classes (i.e., low-, middle- and high-ESP classes of 6.1–20, 20–30 and 30–78.4%, respectively) 17 years after FGD gypsum treatment in Inner Mongolia, China.  Averaged across the three ESP classes, FGD gypsum application increased the SOC contents at the 0–20 and 20–40-cm soil depths by 18 and 35%, respectively, and increased available potassium at the 0–20-cm soil depth by 51% compared with the no-gypsum controls.  The microbial biomass carbon and microbial biomass nitrogen contents at the 20–40-cm soil depth increased by 69 and 194%, respectively, under FGD gypsum.  Except in the high-ESP class, urease activities in the 0–40 cm soil profile were significantly higher in the FGD gypsum treatments than in the controls.  A significant increase in alkaline phosphatase activity was concentrated in the 20–40 cm soil layer; few classes showed significant increases in catalase and invertase activities in the 0–20 cm soil layer.  Pearson correlation analysis showed that increases in soil fertility and biological activity could be attributed to reductions in electrical conductivity, pH and ESP caused by FGD gypsum application.  These results confirm that FGD gypsum application is a viable strategy for reclaiming sodic soils due to its positive effects on soil fertility and biochemistry and that it may contribute to soil ecosystem sustainability.
 
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Assembly and co-occurrence patterns of rare and abundant bacterial sub-communities in rice rhizosphere soil under short-term nitrogen deep placement
LI Gui-long, WU Meng, LI Peng-fa, WEI Shi-ping, LIU Jia, JIANG Chun-yu, LIU Ming, LI Zhong-pei
2021, 20 (12): 3299-3311.   DOI: 10.1016/S2095-3119(20)63462-1
Abstract133)      PDF in ScienceDirect      
Nitrogen (N) deep placement has been found to reduce N leaching and increase N use efficiency in paddy fields.  However, relatively little is known how bacterial consortia, especially abundant and rare taxa, respond to N deep placement, which is critical for understanding the biodiversity and function of agricultural ecosystem.  In this study, Illumina sequencing and ecological models were conducted to examine the diversity patterns and underlying assembly mechanisms of abundant and rare taxa in rice rhizosphere soil under different N fertilization regimes at four rice growth stages in paddy fields.  The results showed that abundant and rare bacteria had distinct distribution patterns in rhizosphere samples.  Abundant bacteria showed ubiquitous distribution; while rare taxa exhibited uneven distribution across all samples.  Stochastic processes dominated community assembly of both abundant and rare bacteria, with dispersal limitation playing a more vital role in abundant bacteria, and undominated processes playing a more important role in rare bacteria.  The N deep placement was associated with a greater influence of dispersal limitation than the broadcast N fertilizer (BN) and no N fertilizer (NN) treatments in abundant and rare taxa of rhizosphere soil; while greater contributions from homogenizing dispersal were observed for BN and NN in rare taxa.  Network analysis indicated that abundant taxa with closer relationships were  usually more likely to occupy the central position of the network than rare taxa.  Nevertheless, most of the keystone species were rare taxa and might have played essential roles in maintaining the network stability.  Overall, these findings highlighted that the ecological mechanisms and co-occurrence patterns of abundant and rare bacteria in rhizosphere soil under N deep placement.
 
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Bacterial diversity and community composition changes in paddy soils that have different parent materials and fertility levels
MA Xin-ling, LIU Jia, CHEN Xiao-fen, LI Wei-tao, JIANG Chun-yu, WU Meng, LIU Ming, LI Zhong-pei
2021, 20 (10): 2797-2806.   DOI: 10.1016/S2095-3119(20)63364-0
Abstract190)      PDF in ScienceDirect      
Parent materials and the fertility levels of paddy soils are highly variable in subtropical China.  Bacterial diversity and community composition play pivotal roles in soil ecosystem processes and functions.  However, the effects of parent material and fertility on bacterial diversity and community composition in paddy soils are unclear.  The key soil factors driving the changes in bacterial diversity, community composition, and the specific bacterial species in soils that are derived from different parent materials and have differing fertility levels are unknown.  Soil samples were collected from paddy fields in two areas with different parent materials (quaternary red clay or tertiary sandstone) and two levels of fertility (high or low).  The variations in bacterial diversity indices and communities were evaluated by 454 pyrosequencing which targeted the V4–V5 region of the 16S rRNA gene.  The effects of parent material and fertility on bacterial diversity and community composition were clarified by a two-way ANOVA and a two-way PERMANOVA.  A principal coordinate analysis (PCoA), a redundancy analysis (RDA), and multivariate regression trees (MRT) were used to assess changes in the studied variables and identify the factors affecting bacterial community composition.  Co-occurrence network analysis was performed to find correlations between bacterial genera and specific soil properties, and a statistical analysis of metagenomic profiles (STAMP) was used to determine bacterial genus abundance differences between the soil samples.  The contributions made by parent material and soil fertility to changes in the bacterial diversity indices were comparable, but soil fertility accounted for a larger part of the shift in bacterial community composition than the parent material.  Soil properties, especially soil texture, were strongly associated with bacterial diversity.  The RDA showed that soil organic carbon (SOC) was the primary factor influencing bacterial community composition.  A key threshold for SOC (25.5 g kg–1) separated low fertility soils from high fertility soils.  The network analysis implied that bacterial interactions tended towards cooperation and that copiotrophic bacteria became dominant when the soil environment improved.  The STAMP revealed that copiotrophic bacteria, such as Massilia and Rhodanobacter, were more abundant in the high fertility soils, while oligotrophic bacteria, such as Anaerolinea, were dominant in low fertility soils.  The results showed that soil texture played a role in bacterial diversity, but nutrients, especially SOC, shaped bacterial community composition in paddy soils with different parent materials and fertility levels.
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Application of Chinese milk vetch affects rice yield and soil productivity in a subtropical double-rice cropping system
CHEN Jing-rui, QIN Wen-jing, CHEN Xiao-fen, CAO Wei-dong, QIAN Guo-min, LIU Jia, XU Chang-xu
2020, 19 (8): 2116-2126.   DOI: 10.1016/S2095-3119(19)62858-3
Abstract152)      PDF in ScienceDirect      
Green manure can be used as a substitute for chemical fertilizer without reducing rice yield.  We studied the responses of soil fertility and rice yield to different combinations of Chinese milk vetch (CMV; Astragalus sinicus L.) and chemical fertilizer in a subtropical double-rice cropping system.  Our goal is to reduce chemical fertilizer use and decrease environmental contamination.  Compared with the recommended rate of chemical fertilizer (CF), both early- and late-rice yields in the two treatments supplied with 15 and 22.5 Mg CMV ha–1 plus 60% CF (represented as 60A and 60B, respectively) showed no significant differences while the two treatments supplied with 30 and 37.5 Mg CMV ha–1 plus 60% CF (represented as 60C and 60D, respectively) showed significantly higher values.  The sustainable yield index (SYI) values in the 60C and 60D treatments with double-rice croppong system were significantly higher than those in other treatments (P<0.05).  Early-rice yield showed a significant positive relationship with the Chinese milk vetch incorporation rate.  The coefficients increased annually from 2009 to 2013 and then decreased in 2014.  Soil organic matter increased over time by the end of the experiment in all of the treatment groups.  Soil organic matter in 60A, 60B and 60C showed no significant difference compared with that in CF, while soil organic matter in 60D was significantly higher than that in CF.  The slopes of soil organic matter and total nitrogen over six years were the highest in 60C and 60D.  The soil total nitrogen content in 60A, 60B, 60C and 60D was higher than that in CF, but the differences were not significant (P>0.05).  Therefore, a relatively high Chinese milk vetch incorporation rate (≥30 Mg ha–1) was more effective in improving the productivity and sustainability of paddy soil.  The decreased coefficients of early-rice yield and the Chinese milk vetch incorporation rate in 2014 implied that the benefits of soil fertility and rice yield created by Chinese milk vetch input may decline after five years under a continuously high rate of Chinese milk vetch incorporation.
 
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Characteristics and roles of cytochrome b5 in cytochrome P450-mediated oxidative reactions in Locusta migratoria
LIU Jiao, ZHANG Xue-yao, WU Hai-hua, MA Wen, ZHU Wen-ya, Kun-Yan ZHU, MA En-bo, ZHANG Jian-zhen
2020, 19 (6): 1512-1521.   DOI: 10.1016/S2095-3119(19)62827-3
Abstract116)      PDF in ScienceDirect      
Cytochrome b5 (Cyt-b5) is a small heme protein and known to be involved in a wide range of biochemical transformations, including cytochrome P450 monooxygenase (CYP)-mediated metabolism of endogenous and exogenous compounds.  Studies on Cyt-b5 are more concentrated in mammals, but are relatively rare in insects.  The characteristics and function of Cyt-b5 from Locusta migratoria have not been described yet.  We sequenced the full-length cDNA sequence of Cyt-b5 from L. migratoria (LmCyt-b5) by reverse transcription-PCR (RT-PCR) based on locust transcriptome database.  The phylogenetic analysis showed that LmCyt-b5 was closely related to the Cyt-b5 from Blattodea.  LmCyt-b5 was highly expressed in ovary, Malpighian tubules, midgut, gastric caeca, and fat bodies.  Silencing of LmCyt-b5 had no effect on the susceptibility of L. migratoria to four different insecticides.  Suppression of LmCyt-b5 or silencing of both LmCyt-b5 and LmCPR did not significantly change the total CYP activity toward the substrate 7-ethoxycoumarin (7-EC).  However, coexpression of LmCYP6FD1 with LmCPR and LmCyt-b5 together in Sf9 cells by using Bac-to-Bac baculovirus expression system significantly increased the catalytic activity of LmCYP6FD1 toward 7-EC as compared with the coexpression of LmCYP6FD1 with cytochrome P450 reductase (LmCPR) or LmCyt-b5 separately.  These results suggest that LmCyt-b5 plays an important role in the catalytic reaction of LmCYP6FD1 toward 7-EC in our in vitro experiments.  Further study is needed to clarify the role of LmCyt-b5 in CYP-mediated catalytic reactions in L. migratoria.
 
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iTRAQ protein profile analysis of soybean stems reveals new aspects critical for lodging in intercropping systems
LIU Wei-guo, WEN Bing-xiao, ZHOU Tao, WANG Li, GAO Yang, LI Shu-xian, QIN Si-si, LIU Jiang, YANG Wen-yu
2019, 18 (9): 2029-2040.   DOI: 10.1016/S2095-3119(18)62123-9
Abstract144)      PDF in ScienceDirect      
Soybean is often intercropped with maize, sugarcane, and sorghum.  Because of the shade coming from the latter, the soybean stem lodging is often a very serious problem in intercropping systems.  The aim of this study is to characterize the possible mechanisms in the stem of shade-induced promotion of seedling soybean lodging in intercropping systems at the proteome level.  We found that the soybean stem became slender and prone to lodging when it was planted with maize in an intercropping system.  The inhibition of lignin biosynthesis and lack of photosynthate (soluble sugar) for the biosynthesis of the cell wall led to the lower internode breaking strength.  A total of 317 proteins were found to be affected in the soybean stem in response to shade.  Under the shade stress, the down-expression of key enzymes involving the phenylpropanoid metabolic pathway inhibited lignin biosynthesis.  The up-regulation of expansin and XTHs protein expression relaxed the cell wall and promoted the elongation of internodes.  Although the expression of the enzymes involving sucrose synthesis increased in the soybean stem, the lack of a carbon source prevented rapid stem growth.  This metabolic deficit is the principal cause of the lower cellulose content in the stem of intercropped soybean, which leads to weakened stems and a propensity for lodging.
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Is the feminization of labor harmful to agricultural production? The decision-making and production control perspective
LIU Jia-cheng, XU Zhi-gang, ZHENG Qiu-fen, Lillian Hua
2019, 18 (6): 1392-1401.   DOI: 10.1016/S2095-3119(19)62649-3
Abstract230)      PDF in ScienceDirect      
Even today, academics continue to debate the effect of feminization of agricultural labor force on agricultural output.  By considering the dimensions of participation in decision-making and production, this study divides the various agricultural production models into three types: (i) the traditional model of decisions made either jointly by men and women or by men alone while both genders participate in production, (ii) complete feminization of agricultural decision-making and the production labor force, and (iii) feminization of the agricultural production labor force only.  This study investigates the effects of combining or separating decision-making and production in regard to agricultural development in the context of feminization of the agricultural labor force.  Using follow-up data collected from 2004–2008 by the Ministry of Agriculture of China, we built a comprehensive panel data model to test our hypotheses.  Our research shows that in comparison to traditional agricultural households and fully feminized agricultural labor forces, partially feminized production resulted in lower grain yield and technological advancement.  The feminization of agricultural labor does not necessarily have a negative impact on agricultural output, especially since heavy manual labor is being increasingly replaced by agricultural machinery and outsourcing of tasks.  The degree of feminization of the decision-making and production processes should be an important consideration when evaluating the purported negative effects of the feminization of agricultural labor. 
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Morphological diversity and correlation analysis of phenotypes and quality traits of proso millet (Panicum miliaceum L.) core collections
ZHANG Da-zhong, Rabia Begum Panhwar, LIU Jia-jia, GONG Xiang-wei, LIANG Ji-bao, LIU Minxuan, LU Ping, GAO Xiao-li, FENG Bai-li
2019, 18 (5): 958-969.   DOI: 10.1016/S2095-3119(18)61997-5
Abstract209)      PDF in ScienceDirect      
Genetic diversity and comprehensive performance are the basis for the discovery and efficient use of proso millet (Panicum miliaceum L.) core collections.  In this study, 386 proso millet core collections were used as materials to observe inflorescence color, leaf phase, inflorescence density, axis shape, branched spike length, panicle type, trichome, measured area of the top3 leaves, and chlorophyll content of the top3 leaves at filling stage.  These core collections were also used to record growth period, plant height, diameter of main stem, plant tiller number, branch number, panicle length, panicle number per plant, and panicle weight per plant at the maturation stage.  Starch, fat, protein, and yellow pigment contents in the grain and 1 000-seed weight were also measured after harvest.  Then, quantitative traits were used for diversity analysis and comprehensive evaluation of each collection.  Correlations between all traits were also analyzed.  Results showed that among the 8 quality traits, the Shannon index (H´) of hull color was the highest (1.588) followed by the H´ of inflorescence density (0.984).  However, inflorescence color and axis shape were lower.  The H´ of 16 quantitative traits were significantly higher than the quality traits with the following traits having the highest indices: fat content (2.092), 1 000-seed weight (2.073), top3 leaves area (2.070), main stem diameter (2.056), and plant height (2.052).  Furthermore, all other traits had a diversity higher than 1.900.  After a comprehensive evaluation of phenotypic traits, plant height, diameter of main stem, plant tiller number, leaf area of top3 leaves, and 1 000-seed weight were the biggest contributors to the principal components.  Six high-fat and high-protein cultivars, including Nuoshu, A75-2, Zhiduoaosizhi, Panlonghuangmi, Xiaobaishu, and Xiaohongshu were also screened.  Correlations between the quantitative traits were significant, including the correlation between quality traits and quantitative traits.  In conclusion, the core collections can be used as basis for discriminating among proso millet cultivars based on related traits and for further studies on millet with rich genetic diversity, good representation, and significant collection between traits.
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Soil application of Trichoderma asperellum GDFS1009 granules promotes growth and resistance to Fusarium graminearum in maize
HE An-le, LIU Jia, WANG Xin-hua, ZHANG Quan-guo, SONG Wei, CHEN Jie
2019, 18 (3): 599-607.   DOI: 10.1016/S2095-3119(18)62089-1
Abstract217)      PDF (945KB)(226)      
Of diseases affecting maize (Zea mays), Fusarium graminearum is one of the most common pathogenic fungi that cause stalk rot.  In the present study, the Trichoderma asperellum GDFS1009 strain was shown to be an effective biocontrol agent against stalk rot.  In a confrontation culture test, Trichoderma strain displayed an approximately 60% inhibition rate on the mycelial growth of F. graminearum.  In pot trials, the application of 2 g/pot of T. asperellum GDFS1009 granules had the best control effect on stalk rot at the seedling stage (up to 53.7%), while the average plant height and fresh weight were also significantly improved.  Additionally when fertilizer was added at 8 g/pot, the application of 3 g/pot of Trichoderma granules had the best control effect on maize stalk rot (40.95%).  In field trials, when inoculating F. graminearum alone, the disease index for inoculating was 62.45, but only 31.43 after treatment with T. asperellum GDFS1009 granules, suggesting a control efficiency of 49.67%.  Furthermore, in a naturally F. graminearum-infected field, Trichoderma granules, when applied for 3 consecutive years, showed significant control of stalk rot and increased yields.
 
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Winter wheat identification by integrating spectral and temporal information derived from multi-resolution remote sensing data
ZHANG Xi-wang, LIU Jian-feng, Zhenyue Qin, QIN Fen
2019, 18 (11): 2628-2643.   DOI: 10.1016/S2095-3119(19)62615-8
Abstract133)      PDF in ScienceDirect      
Timely crop acreage and distribution information are the basic data which drive many agriculture related applications.  For identifying crop types based on remote sensing, methods using only a single image type have significant limitations.  Current research that integrates fine and coarser spatial resolution images, using techniques such as unmixing methods, regression models, and others, usually results in coarse resolution abundance without sufficient detail within pixels, and limited attention has been paid to the spatial relationship between the pixels from these two kinds of images.  Here we propose a new solution to identify winter wheat by integrating spectral and temporal information derived from multi-resolution remote sensing data and determine the spatial distribution of sub-pixels within the coarse resolution pixels.  Firstly, the membership of pixels which belong to winter wheat is calculated using a 25-m resolution resampled Landsat Thematic Mapper (TM) image based on the Bayesian equation.  Then, the winter wheat abundance (acreage fraction in a pixel) is assessed by using a multiple regression model based on the unique temporal change features from moderate resolution imaging spectroradiometer (MODIS) time series data.  Finally, winter wheat is identified by the proposed Abundance-Membership (AM) model based on the spatial relationship between the two types of pixels.  Specifically, winter wheat is identified by comparing the spatially corresponding 10×10 membership pixels of each abundance pixel.  In other words, this method takes advantage of the relative size of membership in a local space, rather than the absolute size in the entire study area.  This method is tested in the major agricultural area of Yiluo Basin, China, and the results show that acreage accuracy (Aa) is 93.01% and sampling accuracy (As) is 91.40%.  Confusion matrix shows that overall accuracy (OA) is 91.4% and the kappa coefficient (Kappa) is 0.755.  These values are significantly improved compared to the traditional Maximum Likelihood classification (MLC) and Random Forest classification (RFC) which rely on spectral features.  The results demonstrate that the identification accuracy can be improved by integrating spectral and temporal information.  Since the identification of winter wheat is performed in the space corresponding to each MODIS pixel, the influence of differences of environmental conditions is greatly reduced.  This advantage allows the proposed method to be effectively applied in other places.
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Shade stress decreases stem strength of soybean through restraining lignin biosynthesis
LIU Wei-guo, Sajad Hussain, LIU Ting, ZOU Jun-lin, REN Meng-lu, ZHOU Tao, LIU Jiang, YANG Feng, YANG Wen-yu
2019, 18 (1): 43-53.   DOI: 10.1016/S2095-3119(18)61905-7
Abstract287)      PDF in ScienceDirect      
Lodging is the most important constraint for soybean growth at seedling stage in maize-soybean relay strip intercropping system.  In the field experiments, three soybean cultivars Nandou 032-4 (shade susceptible cultivar; B1), Jiuyuehuang (moderately shade tolerant cultivar; B2), and Nandou 12 (shade tolerant cultivar; B3) were used to evaluate the relationship between stem stress and lignin metabolism in the stem of soybean.  Results showed that the intercropped soybean was in variable light condition throughout the day time and co-growth stage with maize.  The xylem area and cross section ratio played a main role to form the stem stress.  The B3 both in intercropping and monocropping expressed a high stem stress with higher xylem area, lignin content, and activity of enzymes (phenylalanine ammonia-lyase (PAL), 4-coumarate: CoA ligase (4CL), cinnamyl alcohol dehydrogenase (CAD), and peroxidase (POD)) than those of B1 and B2.  Among the soybean cultivars and planting pattern, lignin content was positively correlated with stem stress.  However, a negative correlation was found between lignin content and actual rate of lodging.  In conclusion, the shade tolerant soybean cultivar had larger xylem area, higher lignin content and activities of CAD, 4CL, PAL, and POD than other soybean cultivars in intercropping.  The lodging in maize-soybean intercropping can be minimized by planting shade tolerant and lodging resistant cultivar of soybean.  The lignin content in stem could be a useful indicator for the evaluation of lodging resistance of soybean in intercropping and activities of enzymes were the key factors that influence the lignin biosynthesis.
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Rapid mapping of candidate genes for cold tolerance in Oryza rufipogon Griff. by QTL-seq of seedlings
LUO Xiang-dong, LIU Jian, ZHAO Jun, DAI Liang-fang, CHEN Ya-ling, ZHANG Ling, ZHANG Fan-tao, HU Biao-lin, XIE Jian-kun
2018, 17 (2): 265-275.   DOI: 10.1016/S2095-3119(17)61712-X
Abstract809)      PDF in ScienceDirect      
Cold stress is a major problem in rice production.  To rapidly identify genes for cold tolerance in Dongxiang wild rice (DWR, Oryza rufipogon Griff.), sequencing-based bulked segregant analysis of QTL-seq method was used to resequence the extremely resistant (R) and susceptible (S) bulks of a backcross inbred lines (BILs) population (derived from Oryza sativa×O. rufipogon) and their parents.  Single nucleotide polymorphisms (SNP)-index graphs and corresponding Δ(SNP-index) graphs (at 99 and 95% confidence levels) for R- and S-bulks detected a total of 2 609 candidate SNPs, including 58 candidate cold-tolerance genes.  Quantitative real-time PCR analysis revealed that 5 out of the 58 candidate genes had significant differences in expression between O. sativa and O. rufipogon.  Structural variation and functional annotations of the 5 candidate genes were also analyzed, and allowed us to identify 2 insertion-deletion (InDel) markers (12-7 and 12-16) that were linked with candidate genes on chromosome 12 in DWR.  These results are helpful for cloning and using cold tolerance genes from common wild rice in cultivated rice.
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Suitability of the DNDC model to simulate yield production and nitrogen uptake for maize and soybean intercropping in the North China Plain
ZHANG Yi-tao, LIU Jian, WANG Hong-yuan, LEI Qiu-liang, LIU Hong-bin, ZHAI Li-mei, REN Tian-zhi, ZHANG Ji-zong
2018, 17 (12): 2790-2801.   DOI: 10.1016/S2095-3119(18)61945-8
Abstract285)      PDF (577KB)(671)      
Intercropping is an important agronomic practice.  However, assessment of intercropping systems using field experiments is often limited by time and cost.  In this study, the suitability of using the DeNitrification DeComposition (DNDC) model to simulate intercropping of maize (Zea mays L.) and soybean (Glycine max L.) and its aftereffect on the succeeding wheat (Triticum aestivum L.) crop was tested in the North China Plain.  First, the model was calibrated and corroborated to simulate crop yield and nitrogen (N) uptake based on a field experiment with a typical double cropping system.  With a wheat crop in winter, the experiment included five treatments in summer: maize monoculture, soybean monoculture, intercropping of maize and soybean with no N topdressing to maize (N0), intercropping of maize and soybean with 75 kg N ha–1 topdressing to maize (N75), and intercropping of maize and soybean with 180 kg N ha–1 topdressing to maize (N180).  All treatments had 45 kg N ha–1 as basal fertilizer.  After calibration and corroboration, DNDC was used to simulate long-term (1955 to 2012) treatment effects on yield.  Results showed that DNDC could stringently capture the yield and N uptake of the intercropping system under all N management scenarios, though it tended to underestimate wheat yield and N uptake under N0 and N75.  Long-term simulation results showed that N75 led to the highest maize and soybean yields per unit planting area among all treatments, increasing maize yield by 59% and soybean yield by 24%, resulting in a land utilization rate 42% higher than monoculture.  The results suggest a high potential to promote soybean production by intercropping soybean with maize in the North China Plain, which will help to meet the large national demand for soybean.
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Effect of shade stress on lignin biosynthesis in soybean stems
LIU Wei-guo, REN Meng-lu, LIU Ting, DU Yong-li, ZHOU Tao, LIU Xiao-ming, LIU Jiang, Sajad Hussain, YANG Wen-yu
2018, 17 (07): 1594-1604.   DOI: 10.1016/S2095-3119(17)61807-0
Abstract509)      PDF in ScienceDirect      
To clarify how shade stress affects lignin biosynthesis in soybean stem, two varieties, Nandou 12 (shade tolerant) and Nan 032-4 (shade susceptible) grew under normal light and shade conditions (the photosynthetically active radiation and the ratio of red:far-red were lower than normal light condition).  Lignin accumulation, transcripts of genes involved in lignin biosynthesis, and intermediates content of lignin biosynthesis were analyzed.  Both soybean varieties suffered shade stress had increased plant heights and internode lengths, and reduced stem diameters and lignin accumulation in stems.  The expression levels of lignin-related genes were significantly influenced by shade stress, with interactions between the light environment and variety.  The gene of 3-hydroxylase (C3H), cinnamoyl-CoA reductase (CCR), caffeoyl-CoA O-methyltransferase (CCoAOMT), and peroxidase (POD) attributed to lignin biosynthesis under shade stress, and the down-regulation of these genes resulted in lower caffeic, sinapic, and ferulic acid levels, which caused a further decrease in lignin biosynthesis.  Under shade stress, the shade tolerant soybean variety (Nandou 12) showed stiffer stems, higher lignin content, and greater gene expression level and higher metabolite contents than shade susceptible one.  So these characteristics could be used for screening the shade-tolerant soybean for intercropping.
 
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Maize-soybean strip intercropping: Achieved a balance between high productivity and sustainability
DU Jun-bo, HAN Tian-fu, GAI Jun-yi, YONG Tai-wen, SUN Xin, WANG Xiao-chun, YANG Feng, LIU Jiang, SHU Kai, LIU Wei-guo, YANG Wen-yu
2018, 17 (04): 747-754.   DOI: 10.1016/S2095-3119(17)61789-1
Abstract1055)      PDF in ScienceDirect      
Intercropping is one of the most vital practice to improve land utilization rate in China that has limited arable land resource. However, the traditional intercropping systems have many disadvantages including illogical field lay-out of crops, low economic value, and labor deficiency, which cannot balance the crop production and agricultural sustainability. In view of this, we developed a novel soybean strip intercropping model using maize as the partner, the regular maize-soybean strip intercropping mainly popularized in northern China and maize-soybean relay-strip intercropping principally extended in southwestern China. Compared to the traditional maize-soybean intercropping systems, the main innovation of field lay-out style in our present intercropping systems is that the distance of two adjacent maize rows are shrunk as a narrow strip, and a strip called wide strip between two adjacent narrow strips is expanded reserving for the growth of two or three rows of soybean plants.  The distance between outer rows of maize and soybean strips are expanded enough for light use efficiency improvement and tractors working in the soybean strips.  Importantly, optimal cultivar screening and increase of plant density achieved a high yield of both the two crops in the intercropping systems and increased land equivalent ratio as high as 2.2.  Annually alternative rotation of the adjacent maize- and soybean-strips increased the grain yield of next seasonal maize, improved the absorption of nitrogen, phosphorus, and potasium of maize, while prevented the continuous cropping obstacles.  Extra soybean production was obtained without affecting maize yield in our strip intercropping systems, which balanced the high crop production and agricultural sustainability.
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Optimize nitrogen fertilization location in root-growing zone to increase grain yield and nitrogen use efficiency of transplanted rice in subtropical China
WU Meng, LIU Ming, LIU Jia, LI Wei-tao, JIANG Chun-yu, LI Zhong-pei
2017, 16 (09): 2073-2081.   DOI: 10.1016/S2095-3119(16)61544-7
Abstract891)      PDF in ScienceDirect      
The optimized nitrogen fertilization location differs in different rice-growing regions.  We optimized nitrogen deep-point application in root-growing zone (NARZ) for transplanted rice in subtropical China.  Field plot experiments were conducted over two years (2014–2015) in a double-rice cropping system to evaluate the effects of nitrogen (N) fertilizer location on grain yield and N use efficiency (NUE).  Four different nitrogen deep-point application methods (DN) were compared with traditional broadcast application (BN) using granular urea.  The results showed that grain yield,  recovery efficiency of N (REN), agronomic efficiency of N (AEN), and partial factor productivity of N (PFPN) significantly increased 10.3–63.4, 13.7–56.7, 24.7–201.9 and 10.2–63.4%, respectively, in DN treatment compared to BN, respectively.  We also find that DN treatments increased grain yield as well as grain N content, and thus grain quality, in comparison with conventional BN treatment.  Correlation analysis indicated that significant improvement in grain yield and NUE mainly resulted from increases in productive panicle number and grain N content.  In our proposed NARZ method, granular urea should be placed 0 to 5 cm around the rice seeding at a 12-cm depth druing rice transplanting.  In NARZ, balanced application of N, P and K further improved grain yield and NUE over treatments with a single N deep-point application.  High N uptake by the rice plant did not cause significant soil fertility depletion, demonstrating that this method could guarantee sustainable rice production.    
 
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Dissection of the genetic architecture for tassel branch number by QTL analysis in two related populations in maize
CHEN Zheng-jie, YANG Cong, TANG Deng-guo, ZHANG Lei, ZHANG Ling, QU Jing-tao, LIU Jian
2017, 16 (07): 1432-1442.   DOI: 10.1016/S2095-3119(16)61538-1
Abstract1012)      PDF in ScienceDirect      
    Tassel branch number (TBN) is the principal component of maize tassel inflorescence architecture and is a typical quantitative trait controlled by multiple genes. The main objective of this research was to detect quantitative trait loci (QTLs) for TBN. The maize inbred line SICAU1212 was used as the common parent to develop BC1S1 and recombinant inbred line (RIL) populations with inbred lines 3237 and B73, respectively. The two related populations consisted of 123 and 238 lines, respectively. Each population was grown and phenotyped for TBN in two environments. Eleven QTLs were detected in the BC1S1 population, located on chromosomes 2, 3, 5, and 7, accounted for 4.45–26.58% of the phenotypic variation. Two QTLs (qB11Jtbn2-1, qB12Ctbn2-1, qBJtbn2-1; q11JBtbn5-1, qB12Ctbn5-1, qBJtbn5-1) that accounted for more than 10% of the phenotypic variation were identified. Three QTLs located on chromosomes 2, 3 and 5, exhibited stable expression in the two environments. Ten QTLs were detected in the RIL population, located on chromosomes 2, 3, 5, 8, and 10, accounted for 2.69–13.58% of the TBN variation. One QTL (qR14Dtbn2-2) explained >10% of the phenotypic variation. One common QTL (qB12Ctbn2-2, qR14Dtbn2-2, qRJtbn2-2) was detected between the two related populations. Three pairs of epistatic effects were identified between two loci with or without additive effects and accounted for 1.19–4.26% of the phenotypic variance. These results demonstrated that TBN variation was mainly caused by major effects, minor effects and slightly modified by epistatic effects. Thus, identification of QTL for TBN may help elucidate the genetic basis of TBN and also facilitate map-based cloning and marker-assisted selection (MAS) in maize breeding programs.
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Shade adaptive response and yield analysis of different soybean genotypes in relay intercropping systems
WU Yu-shan, YANG Feng, GONG Wan-zhuo, Shoaib Ahmed, FAN Yuan-fang, WU Xiao-ling, YONG Tai-wen, LIU Wei-guo, SHU Kai, LIU Jiang, DU Jun-bo, YANG Wen-yu
2017, 16 (06): 1331-1340.   DOI: 10.1016/S2095-3119(16)61525-3
Abstract917)      PDF in ScienceDirect      
Soybean is one of the major oil seed crops, which is usually intercropped with other crops to increase soybean production area and yield.  However, soybean is highly sensitive to shading.  It is unclear if soybean morphology responds to shading (i.e., shade tolerance or avoidance) and which features may be suitable as screening materials in relay strip intercropping.  Therefore, in this study, various agronomic characteristics of different soybean genotypes were analyzed under relay intercropping conditions.  The soybean materials used in this study exhibited genetic diversity, and the coefficient of variations of the agronomic parameters ranged from 13.84 to 72.08% during the shade period and from 6.44 to 52.49% during the maturity period.  The ratios of shading to full irradiance in stem mass fraction (SMF) were almost greater than 1, whereas opposite results were found in the leaves.  Compared with full irradiance, the average stem length (SL), leaf area ratio (LAR) and specific leaf area (SLA) for the two years (2013 and 2014) increased by 0.78, 0.47 and 0.65 under shady conditions, respectively.  However, the stem diameter (SD), total biomass (TB), leaf area (LA), number of nodes (NN) on the main stem, and number of branches (BN) all decreased.  During the shady period, the SL and SMF exhibited a significant negative correlation with yield, and the SD exhibited a significant positive correlation with yield.  The correlation between the soybean yield and agronomic parameters during the mature period, except for SL, the first pod height (FPH), 100-seed weight (100-SW), and reproductive growth period (RGP), were significant (P<0.01), especially for seed weight per branch (SWB), pods per plant (PP), BN, and vegetative growth period (VGP).  These results provide an insight into screening the shade tolerance of soybean varieties and can be useful in targeted breeding programs of relay intercropped soybeans.  
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QTL mapping for leaf area in maize (Zea mays L.) under multi-environments
CUI Ting-ting, HE Kun-hui, CHANG Li-guo, ZHANG Xing-hua, XUE Ji-quan, LIU Jian-chao
2017, 16 (04): 800-808.   DOI: 10.1016/S2095-3119(16)61524-1
Abstract1119)      PDF in ScienceDirect      
Leaves are the main organs of photosynthesis in green plants.  Leaf area plays a vital role in dry matter accumulation and grain yield in maize (Zea mays L.).  Thus, investigating the genetic basis of leaf area will aid efforts to breed maize with high yield.  In this study, a total of 150 F7 recombinant inbred lines (RILs) derived from a cross between the maize lines Xu 178 and K12 were used to evaluate three ear-leaves area (TELA) under multi-environments.  Inclusive composite interval mapping (ICIM) was used to identify quantitative trait loci (QTLs) for TELA under a single environment and estimated breeding value (EBV).  A total of eight QTLs were detected under a single environmental condition, and four QTLs were identified for EBV which also can be detected in single environment.  This indicated that the EBV-detected QTLs have high genetic stability.  A major QTL (qTELA_2-9) located in chromosome bin 2.04/2.05 could be detected in four environments and has a high phenotypic contribution rate (ranging from 10.79 to 16.51%) that making it a good target for molecular breeding.  In addition, joint analysis was used to reveal the genetic basis of leaf area in six environments.  In total, six QTL×environment interactions and nine epistatic interactions were identified.  Our results reveal that the genetic basis of the leaf area is not only mainly determined by additive effects, but also affected by epistatic effects environmental interaction effects.
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Perspective of Chinese GF-1 high-resolution satellite data in agricultural remote sensing monitoring
ZHOU Qing-bo, YU Qiang-yi, LIU Jia, WU Wen-bin, TANG Hua-jun
2017, 16 (02): 242-251.   DOI: 10.1016/S2095-3119(16)61479-X
Abstract1119)      PDF in ScienceDirect      
High-resolution satellite data have been playing an important role in agricultural remote sensing monitoring.  However, the major data sources of high-resolution images are not owned by China.  The cost of large scale use of high resolution imagery data becomes prohibitive.  In pace of the launch of the Chinese “High Resolution Earth Observation Systems”, China is able to receive superb high-resolution remotely sensed images (GF series) that equalizes or even surpasses foreign similar satellites in respect of spatial resolution, scanning width and revisit period.  This paper provides a perspective of using high resolution remote sensing data from satellite GF-1 for agriculture monitoring.  It also assesses the applicability of GF-1 data for agricultural monitoring, and identifies potential applications from regional to national scales.  GF-1’s high resolution (i.e., 2 m/8 m), high revisit cycle (i.e., 4 days), and its visible and near-infrared (VNIR) spectral bands enable a continuous, efficient and effective agricultural dynamics monitoring.  Thus, it has gradually substituted the foreign data sources for mapping crop planting areas, monitoring crop growth, estimating crop yield, monitoring natural disasters, and supporting precision and facility agriculture in China agricultural remote sensing monitoring system (CHARMS).  However, it is still at the initial stage of GF-1 data application in agricultural remote sensing monitoring.  Advanced algorithms for estimating agronomic parameters and soil quality with GF-1 data need to be further investigated, especially for improving the performance of remote sensing monitoring in the fragmented landscapes.  In addition, the thematic product series in terms of land cover, crop allocation, crop growth and production are required to be developed in association with other data sources at multiple spatial scales.  Despite the advantages, the issues such as low spectrum resolution and image distortion associated with high spatial resolution and wide swath width, might pose challenges for GF-1 data applications and need to be addressed in future agricultural monitoring.
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The variation of NAD+-SDH gene in mutant white-fleshed loquat
LI Jing, WANG Yong-qing, CHEN Dong, TU Mei-yan, XIE Hong-jiang, JIANG Guo-liang, LIU Jia, SUN Shu-xia
2016, 15 (8): 1744-1750.   DOI: 10.1016/S2095-3119(15)61297-7
Abstract1834)      PDF in ScienceDirect      
   Loquat (Eriobotrya japonica Lindl.) can be divided into yellow- and white-fleshed cultivars by flesh color. However, a Dongting loquat mutant, which involved bud sport and growing white-fleshed fruit in the central region of the trunk (as wild loquat bears yellow-fleshed fruits naturally), was discovered in the preliminary study. The study cloned the coding sequence (CDS) of NAD+-dependent sorbitol dehydrogenase (NAD+-SDH ) gene from the selected materials of mutant loquat, wild loquat and other nine loquat cultivars/accessions, and found that the CDS of NAD+-SDH gene from the mutant loquat, other than the rest two types of materials, had three single nucleotide polymorphisms (SNPs) loci; in addition, the amino acid encoded at variation loci changed accordingly. NAD+-SDH plays an active role in converting sorbitol into fructose in loquat cultivars. For the mutant white-fleshed loquat, the activity of NAD+-SDH rises first and then drops, the sorbitol content decreases steadily, and its fructose content is higher than that in wild loquat from coloration to maturation stage. As demonstrated by the real-time fluorescence quantification PCR analysis, the expression level of NAD+-SDH gene at maturation stage is about 5-fold lower than wild type. It may be assumed that, the three SNPs loci might lead to excessive conversion of sorbitol into fructose under the catalytic action of NAD+-SDH of white-fleshed mutant loquat at maturation stage, resulting in the increase of fructose content and reduced expression abundance of mRNA after transcription. Besides, NAD+-SDH gene may be related to flesh color and carbohydrate variation of white-fleshed mutant loquat.
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