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Establishing VIGS and CRISPR/Cas9 techniques to verify RsPDS function in radish

Jiali Ying, Yan Wang, Liang Xu, Tiaojiao Qin, Kai Xia, Peng Zhang, Yinbo Ma, Keyun Zhang, Lun Wang, Junhui Dong, Lianxue Fan, Yuelin Zhu, Liwang Liu
2024, 23 (5): 1557-1567.   DOI: 10.1016/j.jia.2024.03.059
Abstract134)      PDF in ScienceDirect      
Virus-induced gene silencing (VIGS) and clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/Cas) systems are effective technologies for rapid and accurate gene function verification in modern plant biotechnology.  However, the investigation of gene silencing and editing in radish remains limited.  In this study, a bleaching phenotype was generated through the knockdown of RsPDS using tobacco rattle virus (TRV)- and turnip yellow mosaic virus (TYMV)-mediated gene silencing vectors.  The TYMV-mediated gene silencing efficiency was higher than the TRV-based VIGS system in radish.  The expression level of RsPDS was significantly inhibited using VIGS in ‘NAU-067’ radish leaves.  The rootless seedlings of ‘NAU-067’ were infected with Agrobacterium rhizogenes using the 2300GN-Ubi-RsPDS-Cas9 vector with two target sequences.  Nine adventitious roots were blue with GUS staining, and four of these adventitious roots were edited at target sequence 1 of the RsPDS gene as indicated by Sanger sequencing.  Furthermore, albino lines were generated with Atumefaciens-mediated transformation of radish cotyledons.  Five base substitutions and three base deletions occurred at target sequence 2 in Line 1, and three base insertions and three base substitutions occurred at target sequence 1 in Line 2.  This study shows that VIGS and CRISPR/Cas9 techniques can be employed to precisely verify the biological functions of genes in radish, which will facilitate the genetic improvement of vital horticultural traits in radish breeding program
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Potential global distribution of the guava root-knot nematode Meloidogyne enterolobii under different climate change scenarios using MaxEnt ecological niche modeling
PAN Song, PENG De-liang, LI Ying-mei, CHEN Zhi-jie, ZHAI Ying-yan, LIU Chen, HONG Bo
2023, 22 (7): 2138-2150.   DOI: 10.1016/j.jia.2023.06.022
Abstract139)      PDF in ScienceDirect      

In recent years, Meloidogyne enterolobii has emerged as a major parasitic nematode infesting many plants in tropical or subtropical areas. However, the regions of potential distribution and the main contributing environmental variables for this nematode are unclear. Under the current climate scenario, we predicted the potential geographic distributions of M. enterolobii worldwide and in China using a Maximum Entropy (MaxEnt) model with the occurrence data of this species. Furthermore, the potential distributions of M. enterolobii were projected under three future climate scenarios (BCC-CSM2-MR, CanESM5 and CNRM-CM6-1) for the periods 2050s and 2090s. Changes in the potential distribution were also predicted under different climate conditions. The results showed that highly suitable regions for M. enterolobii were concentrated in Africa, South America, Asia, and North America between latitudes 30° S to 30° N. Bio16 (precipitation of the wettest quarter), bio10 (mean temperature of the warmest quarter), and bio11 (mean temperature of the coldest quarter) were the variables contributing most in predicting potential distributions of M. enterolobii. In addition, the potential suitable areas for M. enterolobii will shift toward higher latitudes under future climate scenarios. This study provides a theoretical basis for controlling and managing this nematode.

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Enhancing boll protein synthesis and carbohydrate conversion by the application of exogenous amino acids at the peak flowering stage increased the boll Bt toxin concentration and lint yield in cotton
LIU Zhen-yu, LI Yi-yang, Leila. I. M. TAMBEL, LIU Yu-ting, DAI Yu-yang, XU Ze, LENG Xin-hua, ZHANG Xiang, CHEN De-hua, CHEN Yuan
2023, 22 (6): 1684-1694.   DOI: 10.1016/j.jia.2022.10.003
Abstract198)      PDF in ScienceDirect      

In Bacillus thuringenesis (Bt) transgenic cotton, the cotton boll has the lowest insecticidal protein content when compared to the other organs.  The present study investigated the effects of amino acid spray application at the peak flowering stage on the cotton boll Bt toxin concentration and yield formation.  Boll protein synthesis and carbohydrate conversion were also studied to reveal the fundamental mechanism.  Three treatments (i.e., CK, the untreated control; LA1, five amino acids; LA2, 21 amino acids) were applied to two Bt cultivars of Ghirsutum (i.e., the hybrid Sikang 3 and the conventional Sikang 1) in the cotton-growing seasons during 2017 and 2018.  Amino acid spray application at the peak flowering stage resulted in an increase of 5.2–16.4% in the boll Bt protein concentration and an increase of 5.5–11.3% in the seed cotton yield, but there was no difference between the two amino acid treatments.  In addition, amino acid applications led to increases in the amino acid content, soluble protein content, glutamate pyruvate transaminase (GPT) activity, glutamate oxaloacetate transaminase (GOT) activity, glucose content, fructose content and soluble acid invertase (SAI) activity.  This study also found that Bt protein content, enhanced boll number and the weight of opened bolls were closely related to carbon and nitrogen metabolism.  The Bt protein content had significant linear positive correlations with amino acid and soluble protein contents.  Enhanced boll number had significant linear positive correlations with the GPT and GOT activities from 15–25 days after flowering (DAF).  The weight of opened bolls from 55–65 DAF had a significant linear positive correlation with the SAI activity.  These results indicate that the enhancement of boll protein synthesis and carbohydrate conversion by amino acid application resulted in a simultaneous increase in the boll Bt protein concentration and cotton lint yield.

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Identification and characterization of long-InDels through whole genome resequencing to facilitate fine-mapping of a QTL for plant height in soybean (Glycine max L. Merr.)
LIU Chen, TIAN Yu, LIU Zhang-xiong, GU Yong-zhe, ZHANG Bo, LI Ying-hui, NA Jie, QIU Li-juan
2022, 21 (7): 1903-1912.   DOI: 10.1016/S2095-3119(21)63675-4
Abstract248)      PDF in ScienceDirect      
With the development of sequencing technology, insertions-deletions (InDels) have been increasingly reported to be involved in the genetic deter mination of agronomical traits.  However, most studies have focused on the identification and application of short-InDels (1–15 bp) for genetic analysis.  The objective of this study was to deeply deploy long-InDels (>15 bp) for the genetic analysis of important agronomic traits in soybean.  A total of 13 573 polymorphic long-InDels were identified between parents Zhongpin 03-5373 (ZP) and Zhonghuang 13 (ZH), which were unevenly distributed on 20 chromosomes of soybean, varying from 321 in Chr11 to 1 246 in Chr18.  Consistent with the distribution pattern of annotated genes, the average density of long-InDels in arm regions was significantly higher than that in pericentromeric regions at the P=0.01 level.  A total of 2 704 (19.9% of total) long-InDels were located in genic regions, including 319 large-effect long-InDels, which resulted in truncated or elongated protein sequences.  A previously identified QTL (qPH16) underlying plant height was further analyzed, and it was found that 26 out of 35 (74.3%) long-InDel markers located in the qPH16 region showed clear polymorphisms between parents ZP and ZH.  Seven markers, including three long-InDels and four previously reported SNP markers, were used to genotype 242 recombinant inbred lines derived from ZP×ZH.  As a result, the qPH16 locus was narrowed from a 960-kb region to a 477.55-kb region, containing 65 annotated genes.  Therefore, these long-InDels are a complementary genetic resource of SNPs and short-InDels for plant height and can facilitate genetic studies and molecular assisted selection breeding in soybean.
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QTL analysis for plant height and fine mapping of two environmentally stable QTLs with major effects in soybean
TIAN Yu, YANG Lei, LU Hong-feng, ZHANG Bo, LI Yan-fei, LIU Chen, GE Tian-li, LIU Yu-lin, HAN Jia-nan, LI Ying-hui, QIU Li-juan
2022, 21 (4): 933-946.   DOI: 10.1016/S2095-3119(21)63693-6
Abstract241)      PDF in ScienceDirect      
Plant height is an important agronomic trait, which is governed by multiple genes with major or minor effects.  Of numerous QTLs for plant height reported in soybean, most are in large genomic regions, which results in a still unknown molecular mechanism for plant height.  Increasing the density of molecular markers in genetic maps will significantly improve the efficiency and accuracy of QTL mapping.  This study constructed a high-density genetic map using 4 011 recombination bin markers developed from whole genome re-sequencing of 241 recombinant inbred lines (RILs) and their bi-parents, Zhonghuang 13 (ZH) and Zhongpin 03-5373 (ZP).  The total genetic distance of this bin map was 3 139.15 cM, with an average interval of 0.78 cM between adjacent bin markers.  Comparative genomic analysis indicated that this genetic map showed a high collinearity with the soybean reference genome.  Based on this bin map, nine QTLs for plant height were detected across six environments, including three novel loci (qPH-b_11, qPH-b_17 and qPH-b_18).  Of them, two environmentally stable QTLs qPH-b_13 and qPH-b_19-1 played a major role in plant height, which explained 10.56–32.7% of the phenotypic variance.  They were fine-mapped to 440.12 and 237.06 kb region, covering 54 and 28 annotated genes, respectively.  Via the function of homologous genes in Arabidopsis and expression analysis, two genes of them were preferentially predicted as candidate genes for further study.
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Genome-wide development of interspecific microsatellite markers for Saccharum officinarum and Saccharum spontaneum
LIU Lei, WANG Heng-bo, LI Yi-han, CHEN Shu-qi, WU Ming-xing, DOU Mei-jie, QI Yi-yin, FANG Jing-ping, ZHANG Ji-sen
2022, 21 (11): 3230-3244.   DOI: 10.1016/j.jia.2022.08.129
Abstract258)      PDF in ScienceDirect      

Sugarcane has a large, complex, polyploid genome that has hindered the progress of genomic research and molecular marker-assisted selection.  The user-friendly SSR markers have attracted considerable attention owing to their ideal genetic attributes.  However, these markers were not characterized and developed at the genome-wide scale due to the previously lacking high-quality chromosome-level assembled sugarcane genomes.  In this present study, 744 305 and 361 638 candidate SSRs were identified from the genomes of Sofficinarum and Sspontaneum, respectively.  We verified the reliability of the predicted SSRs by using 1 200 interspecific SSR primer pairs to detect polymorphisms among 11 representative accessions of Saccharum, including Sspontaneum, Sofficinarum, Srobustum, and modern sugarcane hybrid.  The results showed that 660 SSR markers displayed interspecific polymorphisms among these accessions.  Furthermore, 100 SSRs were randomly selected to detect the genetic diversity for 39 representative Saccharum accessions.  A total of 320 alleles were generated using 100 polymorphic primers, with each marker ranging from two to seven alleles.  The genetic diversity analysis revealed that these accessions were distributed in four main groups, including group I (14 Sspontaneum accessions), group II (two Sofficinarum accessions), group III (18 modern sugarcane hybrid accessions), and group IV (five Srobustum accessions).  Experimental verification supported the reliability of the SSR markers based on genome-wide predictions.  The development of a large number of SSR markers based on wet experiments is valuable for genetic studies, including genetic linkage maps, comparative genome analysis, genome-wide association studies, and marker-assisted selection in Saccharum.

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Identification of blast-resistance loci through genome-wide association analysis in foxtail millet (Setaria italica (L.) Beauv.)
LI Zhi-jiang, JIA Guan-qing, LI Xiang-yu, LI Yi-chu, ZHI Hui, TANG Sha, MA Jin-feng, ZHANG Shuo, LI Yan-dong, SHANG Zhong-lin, DIAO Xian-min
2021, 20 (8): 2056-2064.   DOI: 10.1016/S2095-3119(20)63196-3
Abstract198)      PDF in ScienceDirect      
Blast disease caused by the fungus Magnaporthe grisea results in significant yield losses of cereal crops across the world.  To date, very few regulatory genes contributing to blast resistance in grass species have been identified and the genetic basis of blast resistance in cereals remains elusive.  Here, a core collection of foxtail millet (Setaria italica) containing 888 accessions was evaluated through inoculation with the blast strain HN-1 and a genome-wide association study (GWAS) was performed to detect regulators responsible for blast disease resistance in foxtail millet.  The phenotypic variation of foxtail millet accessions inoculated with the blast strain HN-1 indicated that less than 1.60% of the samples were highly resistant, 35.25% were moderately resistant, 57.09% were moderately susceptible, and 6.08% were highly susceptible.  The geographical pattern of blast-resistant samples revealed that a high proportion of resistant accessions were located in lower latitude regions where the foxtail millet growing season has higher rain precipitation.  Using 720 000 SNP markers covering the Setaria genome, GWAS showed that two genomic loci from chromosomes 2 and 9 were significantly associated with blast disease resistance in foxtail millet.  Finally, eight putative genes were identified using rice blast-related transcriptomic data.  The results of this work lay a foundation for the foxtail millet blast resistance biology and provide guidance for breeding practices in this promising crop species and other cereals.
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Changes of oxidative metabolism in the roots of wheat (Triticum aestivum L.) seedlings in response to elevated ammonium concentrations
LIU Yang, LI Yu-xiang, LI Yi-xiang, TIAN Zhong-wei, HU Jin-ling, Steve ADKINS, DAI Ting-bo
2021, 20 (5): 1216-1228.   DOI: 10.1016/S2095-3119(20)63216-6
Abstract157)      PDF in ScienceDirect      
To elucidate the response of oxidative metabolism, triggered by elevated ammonium (NH4+) concentrations, on root growth of wheat seedlings, Yumai 49 (NH4+-tolerant) and Lumai 15 (NH4+-sensitive) cultivars were supplied with either 5.0 mmol L–1 NH4+-N (EAC) or 5.0 mmol L–1 NO3-N (CON) under hydroponic conditions.  Root growth in both cultivars was significantly reduced under EAC, and the negative effect was greater in Lumai 15.  EAC enhanced the activities of monodehydroascorbate reductase and dehydroascorbate reductase in the roots of both cultivars, while it decreased ascorbic acid (ASA) content and GDP-mannose pyrophosphorylase (GMPase) activity at the 12th day after treatment in Lumai 15 by 62.0 and 71.4%; and in Yumai 49 by 38.8 and 62.2%, respectively, indicating that the regeneration of ASA was increased, but the biosynthesis of ASA was reduced under EAC treatment.  Moreover, EAC increased DHA/ASA, reactive oxygen species (ROS), and malondialdehyde contents, as well as antioxidant enzyme activities in the roots of both cultivars.  Relatively greater increases in ROS and soluble sugar, and lower antioxidant enzyme activities in Lumai 15 indicate severe disruption of oxidative metabolism when compared to Yumai 49.  Results reveal that the reduction of ASA biosynthesis via decreased GMPase activity under the EAC condition probably acts as a trigger for accumulated ROS and imbalanced redox status, resulting in root growth inhibition during wheat seedling growth stage.  Yumai 49, being an NH4+-tolerant cultivar, had the stronger capacity to protect itself from oxidative stress, which allowed it to retain a lower DHA to ASA ratio by maintaining a better redox homeostasis than could be maintained in the NH4+-sensitive cultivar Lumai 15.
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Phosphate rock reduces the bioavailability of heavy metals by influencing the bacterial communities during aerobic composting
CUI Hu, OU Yang, WANG Li-xia, YAN Bai-xing, LI Ying-xin, DING Da-wei
2021, 20 (5): 1137-1146.   DOI: 10.1016/S2095-3119(20)63300-7
Abstract122)      PDF in ScienceDirect      
Available information on the microbial mechanisms associated with heavy metal (HM) passivation during co-composting amended with phosphate rock (PR) remains limited.  Thus, this study investigated the dynamic changes in bacterial communities and HM-fractions (Zn, Cu, Cd, Cr and Pb) during swine manure composting with maize straw, and ascertained the bacterial influence on HM-passivation.  The results demonstrated that the addition of PR improved HM-passivation, especially for Zn and Cd, with their bioavailability factors (BFs) reduced by 247.41 and 176.25%, respectively.  As for bacterial communities, the proportion of Firmicutes decreased, while the proportions of Proteobacteria, Bacteroidetes, Deinococcus-Thermus and Gemmatimonadetes increased in all treatments.  PR significantly changed the primary bacterial phyla in the thermophilic phase.  Bacteroidetes were the main bacterial component controlling the passivation of Zn, Cu and Cr, while Deinococcus-Thermus mainly regulated the mobility of Zn and Pb, and Proteobacteria only dominated the transformation among Cd-fractions.  These results may provide a reference for the use of HM-passivation techniques during composting.
 
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Susceptibility and tissue specificity of Spodoptera frugiperda to Junonia coenia densovirus
CHEN Zu-wen, YANG Yan-chao, ZHANG Jian-feng, JIN Ming-hui, XIAO Yu-tao, XIA Zhi-chao, LIU Yuan-yuan, YU Sai-zhen, YANG Yong-bo, WANG Yuan, LI Yi, LIU Kai-yu
2021, 20 (3): 840-849.   DOI: 10.1016/S2095-3119(20)63163-X
Abstract113)      PDF in ScienceDirect      
The fall armyworm, Spodoptera frugiperda, which destroys many economic crops such as rice and maize, has recently invaded China.  Insect viruses as biological control agents play important roles in killing pests.  One potential viral insecticide is the environmentally highly infective and virulent densovirus.  We successfully rescued Junonia coenia densovirus (JcDV) using its infectious clone in different insect cell lines and larvae of three insect species.  Results showed that the lysate of cultured insect cells transfected by the JcDV infectious clone killed the 2nd instar S. frugiperda.  The LD50 of homogenate from JcDV-infected Spodoptera litura to the 2nd instar S. frugiperda (1.76×108 viral genome copies per larva during 10 d post infection) was higher than that of the 2nd instar S. litura (7.39×107 JcDV genome copies) or Helicoverpa armigera larvae (9.71×107 JcDV genome copies).  The LT50 of the S. litura homogenate (2.60×109 viral genome copies each larva) to the 2nd instar S. frugiperda was 6.96 d, longer than that of the S. litura (6.18 d) or the 2nd instar H. armigera (5.94 d).  JcDV could infect the fat body of H. armigera, but not S. frugiperda or S. litura.  Although JcDV can infect all three lepidopteran species, their susceptibility to the virus differs.  JcDV has great potential as a biological control agent against pests such as S. frugiperda.
 
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The effect of amylose on kernel phenotypic characteristics, starch-related gene expression and amylose inheritance in naturally mutated high-amylose maize
ZHANG Xu-dong, GAO Xue-chun, LI Zhi-wei, XU Lu-chun, LI Yi-bo, ZHANG Ren-he, XUE Ji-quan, GUO Dong-wei
2020, 19 (6): 1554-1564.   DOI: 10.1016/S2095-3119(19)62779-6
Abstract122)      PDF in ScienceDirect      
High-amylose maize starch has great potential for widespread industrial use due to its ability to form strong gels and film and in the food processing field, thus serving as a resistant starch source.  However, there is still a substantial shortage of high-amylose maize due to the limitation of natural germplasm resources, although the well-known amylose extender (ae) gene mutants have been found to produce high-amylose maize lines since 1948.  In this context, high-amylose maize lines (13 inbreds and 18 hybrids) originating from a natural amylose mutant in our testing field were utilized to study the correlation between amylose content (AC) and phenotypic traits (kernel morphology and endosperm glossiness), grain filling characteristics, gene expression, and amylose inheritance.  Our results showed that AC was negatively correlated with total starch content but was not correlated with grain phenotypes, such as kernel fullness, kernel morphology and endosperm glossiness.  Maize lines with higher amylose had a greater grain filling rate than that of the control (B73) during the first 20 days after pollination (DAP).  Both starch debranching enzyme (DBE) groups and starch branching enzyme IIb (SBEIIb) groups showed a greater abundance in the control (B73) than in the high-amylose maize lines.  Male parents directly predicted AC of F1, which was moderately positively correlated with the F2 generation.
 
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Gene mapping and candidate gene analysis of aberrant-floral spikelet 1 (afs1) in rice (Oryza sativa L.)
ZHANG Ting, YOU Jing, YU Guo-ling, ZHANG Yi, CHEN Huan, LI Yi-dan, YE Li, YAO Wan-yue, TU Yu-jie, LING Ying-hua, HE Guang-hua, LI Yun-feng
2020, 19 (4): 921-930.   DOI: 10.1016/S2095-3119(19)62847-9
Abstract136)      PDF in ScienceDirect      
The spikelet is a unique inflorescence structure in grasses.  However, the molecular mechanism that regulates its development remains unclear, and we therefore characterize a spikelet mutant of rice (Oryza sativa L.), aberrant-floral spikelet 1 (afs1), which was derived from treatment of Xinong 1B with ethyl methanesulfonate.  In the afs1 mutant, the spikelet developed an additional lemma-like organ alongside the other normally developed floral organs, and the paleae were degenerated to differing degrees with or without normally developed inner floral organs.  Genetic analysis revealed that the afs1 phenotype was controlled by a single recessive gene.  The AFS1 gene was mapped between the insertion/deletion (InDel) marker Indel19 and the simple sequence repeat marker RM16893, with a physical distance of 128.5 kb on chromosome 4.  Using sequence analysis, we identified the deletion of a 5-bp fragment and a transversion from G to A within LOC_Os04g32510/ LAX2, which caused early termination of translation in the afs1 mutant.  These findings suggest that AFS1 may be a new allele of LAX2, and is involved in the development of floral organs by regulating the expression of genes related to their development.  The above results provide a new view on the function of LAX2, which may also regulate the development of spikelets.
 
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An improved protein expression system for T3SS genes regulation analysis in Xanthomonas oryzae pv. oryzae
XU Jin-bo, ZHANG Cui-ping, WUNIERBIEKE Mei-li, YANG Xiao-fei, LI Yi-lang, CHEN Xiao-bin, CHEN Gong-you, ZOU Li-fang
2019, 18 (6): 1189-1198.   DOI: 10.1016/S2095-3119(19)62606-7
Abstract248)      PDF in ScienceDirect      
Xanthomonas oryzea pv. oryzae (Xoo) is the causal agent of bacterial blight of rice, which is a significant threat to many of rice-growing regions. The type III secretion system (T3SS) is an essential virulence factor in Xoo. Expression of the T3SS is often induced in the host environment or in hrp-inducing medium but is repressed in nutrient-rich medium. The elucidation of molecular mechanism underlying induction of T3SS genes expression is a very important step to lift the veil on global virulence regulation network in Xoo. Thus, an efficient and reliable genetic tool system is required for detection of the T3SS proteins. In this study, we constructed a protein expression vector pH3-flag based on the backbone of pHM1, a most widely used vector in Xoo strains, especially a model strain PXO99A. This vector contains a synthesized MCS-FLAG cassette that consists of a multiple cloning site (MCS), containing a modified pUC18 polylinker, and Flag as a C-terminal tag. The cassette is flanked by transcriptional terminators to eliminate interference of external transcription enabling detection of accurate protein expression. We evaluated the potential of this expression vector as T3SS proteins detection system and demonstrated it is applicable in the study of T3SS genes expression regulation in Xoo. This improved expression system could be very effectively used as a molecular tool in understanding some virulence genes expression and regulation in Xoo and other Xanthomonas spp.
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Spatial variability of soil bulk density and its controlling factors in an agricultural intensive area of Chengdu Plain, Southwest China
LI Shan, LI Qi-quan, WANG Chang-quan, LI Bing, GAO Xue-song, LI Yi-ding, WU De-yong
2019, 18 (2): 290-300.   DOI: 10.1016/S2095-3119(18)61930-6
Abstract273)      PDF (3344KB)(261)      
Soil bulk density is a basic but important physic soil property related to soil porosity, soil moisture and hydraulic conductivity, which is crucial to soil quality assessment and land use management.  In this study, we evaluated the spatial variability of soil bulk density in the 0–20, 20–40, 40–60 and 60–100 cm layers as well as its affecting factors in Southwest China’s agricultural intensive area.  Results indicated the mean value of surface soil bulk density (0–20 cm) was 1.26 g cm–3, significantly lower than that of subsoil (20–100 cm).  No statistical difference existed among the subsoil with a mean soil bulk density of 1.54 g cm–3.  Spatially, soil bulk density played a similar spatial pattern in soil profile, whereas obvious differences were found in details.  The nugget effects for soil bulk density in the 0–20 and 20–40 cm layers were 27.22 and 27.02% while 12.06 and 3.46% in the 40–60 and 60–100 cm layers, respectively, gradually decreasing in the soil profile, indicating that the spatial variability of soil bulk density above 40 cm was affected by structural and random factors while dominated by structural factors under 40 cm.  Soil organic matter was the controlling factor on the spatial variability of soil bulk density in each layer.  Land use and elevation were another two dominated factor controlling the spatial variability of soil bulk density in the 0–20 and 40–60 cm layers, respectively.  Soil genus was one of the dominated factors controlling the spatial variability of soil bulk below 40 cm. 
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Overexpression of the Suaeda salsa SsNHX1 gene confers enhanced salt and drought tolerance to transgenic Zea mays
HUANG Ying, ZHANG Xiao-xia, LI Yi-hong, DING Jian-zhou, DU Han-mei, ZHAO Zhuo, ZHOU Li-na, LIU Chan, GAO Shi-bin, CAO Mo-ju, LU Yan-li, ZHANG Su-zhi
2018, 17 (12): 2612-2623.   DOI: 10.1016/S2095-3119(18)61998-7
Abstract300)      PDF in ScienceDirect      
Maize is one of the most important crops worldwide, but it suffers from salt stress when grown in saline-alkaline soil. There is therefore an urgent need to improve maize salt tolerance and crop yield. In this study, the SsNHX1 gene of Suaeda salsa, which encodes a vacuolar membrane Na+/H+ antiporter, was transformed into the maize inbred line 18-599 by Agrobacterium-mediated transformation. Transgenic maize plants overexpressing the SsNHX1 gene showed less growth retardation when treated with an increasing NaCl gradient of up to 1%, indicating enhanced salt tolerance. The improved salt tolerance of transgenic plants was also demonstrated by a significantly elevated seed germination rate (79%) and a reduction in seminal root length inhibition. Moreover, transgenic plants under salt stress exhibited less physiological damage. SsNHX1-overexpressing transgenic maize accumulated more Na+ and K+ than wild-type (WT) plants particularly in the leaves, resulting in a higher ratio of K+/Na+ in the leaves under salt stress. This result revealed that the improved salt tolerance of SsNHX1-overexpressing transgenic maize plants was likely attributed to SsNHX1-mediated localization of Na+ to vacuoles and subsequent maintenance of the cytosolic ionic balance. In addition, SsNHX1 overexpression also improved the drought tolerance of the transgenic maize plants, as rehydrated transgenic plants were restored to normal growth while WT plants did not grow normally after dehydration treatment. Therefore, based on our engineering approach, SsNHX1 represents a promising candidate gene for improving the salt and drought tolerance of maize and other crops.
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Overexpression of AmDUF1517 enhanced tolerance to salinity, drought, and cold stress in transgenic cotton
HAO Yu-qiong, LU Guo-qing, WANG Li-hua, WANG Chun-ling, GUO Hui-ming, LI Yi-fei, CHENG Hong-mei
2018, 17 (10): 2204-2214.   DOI: 10.1016/S2095-3119(17)61897-5
Abstract474)      PDF (4492KB)(386)      
As abiotic stresses become more severe as a result of global climate changes, the growth and development of plants are restricted. In the development of agricultural crops with greater stress tolerance, AmDUF1517 had been isolated from the highly stress-tolerant shrub Ammopiptanthus mongolicus, and can significantly enhance stress tolerance when inserted in Arabidopsis thaliana. In this study, we inserted this gene into cotton to analyze its potential for conferring stress tolerance. Two independent transgenic cotton lines were used. Southern blot analyses indicated that AmDUF1517 was integrated into the cotton genome. Physiological analysis demonstrated that AmDUF1517-transgenic cotton had stronger resistance than the control when treated with salt, drought, and cold stresses. Further analysis showed that trans-AmDUF1517 cotton displayed significantly higher antioxidant enzyme (superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and glutathione S-transferase (GST)) activity and less reactive oxygen species (ROS) accumulation, which suggests that overexpression of AmDUF1517 can improve cotton resistance to stress by maintaining ROS homeostasis, as well as by alleviating cell membrane injury. These results imply that AmDUF1517 is a candidate gene in improving cotton resistance to abiotic stress. 
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Insecticide resistance of the field populations of oriental armyworm, Mythimna separata (Walker) in Shaanxi and Shanxi provinces of China
ZHAO Yu-yu, SU Li, LI Shuai, LI Yi-ping, XU Xiang-li, CHENG Wei-ning, WANG Yi, WU Jun-xiang
2018, 17 (07): 1556-1562.   DOI: 10.1016/S2095-3119(17)61787-8
Abstract518)      PDF in ScienceDirect      
Resistance of five field populations of Mythimna separata (Walker) collected from Shaanxi and Shanxi provinces of China to six different insecticides was evaluated by leaf dip method in the laboratory.  The results showed that all populations were relatively sensitive to emamectin benzoate with a resistance ratio (RR) of 0.583–1.583 folds.  All populations showed susceptible or low level resistance to chlorantraniliprole and beta-cypermethrin.  Compared with a relatively susceptible strain of M. separata, the resistance level of the whole populations ranged from susceptible to moderate to chlorpyrifos and lambda-cyhalothrin, moderate to high to phoxim (RR=19.367–70.100) except for population from Sanyuan County (RR=2.567).  Pair-wise correlation analysis among different insecticides indicated that chlorpyrifos has a significantly positive and significant correlation with emamectin benzoate.  Chlorantraniliprole didn’t have significant correlation with emamectin benzoate, chlorpyrifos and phoxim.  Therefore, emamectin benzoate, chlorantraniliprole and beta-cypermethrin are recommended to control oriental armyworm.  Meanwhile, to postpone the occurrence and development of insecticide resistance in Shaanxi and Shanxi provinces, alternative and rotational application of insecticides between chlorantraniliprole and emamectin benzoate or chlorpyrifos is necessary.
 
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Long-term grazing exclusion influences arbuscular mycorrhizal fungi and their association with vegetation in typical steppe of Inner Mongolia, China
CHEN Xue-jiao, LIN Qi-mei, ZHAO Xiao-rong, CHEN Hao, WEN Jing, LI Ying, LI Gui-tong
2018, 17 (06): 1445-1453.   DOI: 10.1016/S2095-3119(17)61881-1
Abstract485)      PDF in ScienceDirect      
It is not certain that long-term grazing exclusion influences arbuscular mycorrhizal (AM) fungi and their association with steppe vegetation.  In this study, soil and plant samples were collected from two sites of grazing exclusion since 1983 (E83) and 1996 (E96), and one site of free-grazing (FG) in the typical steppe of Xilinguole League, Inner Mongolia, China, and assayed for soil basic physicochemical properties, AM fungal parameters, aboveground biomass and shoot phosphorus (P) uptake as well.  The results showed that long-term grazing exclusion of E83 and E96 led to less drastic seasonal changes and significant increases in spore density, hyphal length density and root colonization intensity of AM fungi and even soil alkaline phosphatase activity, by up to 300, 168, 110 and 102%, respectively, compared with those of FG site.  In addition, the total aboveground biomass and shoot P uptake of E83 and E96 were 75–992% and 58–645%, respectively, higher than those of FG.  Generally, the root colonization intensity, spore density, and hyphal length density of AM fungi were all positively correlated with the aboveground biomass and even shoot P uptake of plant.  These results may imply that grazing exclusion play a critical role in increasing the growth of AM fungi, and subsequently, may increase plant P uptake and aboveground biomass production.  Moreover, the spore density could sensitively reflect the impacts of long-term grazing exclusion on AM fungi since survival strategy of spores in soil.
 
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Ultrastructure of the sensilla on antennae and mouthparts of larval and adult Plutella xylostella (Lepidoptera: Plutellidae)
LI Yi-ping, DU Xiao, LIU Fang-fang, LI Yin, LIU Tong-xian
2018, 17 (06): 1409-1420.   DOI: 10.1016/S2095-3119(17)61844-6
Abstract519)      PDF in ScienceDirect      
Plutella xylostella (L.) (Plutellidae) is an important agricultural pest throughout the world.  In this study, the morphology of antennal and mouthpart sensilla in the larvae and adults of P. xylostella (L.) was observed by using a scanning electron microscope.  The larval antennae possess six sensilla basiconica, two sensilla chaetica and one sensillum styloconicum.  Larval mouthparts possess six types of sensilla: sensilla chaetica, sensilla digitiformia, sensilla epipharyngeal, sensilla basiconica, sensilla styloconica and sensilla placodea.  In the adult, seven types of sensilla are found on the antennae in males and six types of sensilla (sensilla basiconica absent) occur in females.  Sexual dimorphism is also found in the number and size of these sensilla on the antennae of adults.  We describe for the first time the five types of sensilla on the mouthparts of the adult of P. xylostella.  This study provides useful information for further research into the function of these sensilla, and better understanding the behavioral mechanisms involved in pest control.
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Isolation and expression analysis of NtCHS6, a new chalcone synthase gene from Nicotiana tabacum
CHEN Shuai, ZHANG Yin-chao, PAN Xu-hao, LI Yi-ting, CUI Li-jie, WU Feng-yan, CAO Mo-ju, YANG Ai-guo , PAN Guang-tang
2017, 16 (07): 1443-1450.   DOI: 10.1016/S2095-3119(16)61503-4
Abstract771)      PDF in ScienceDirect      
Chalcone synthases (CHS, EC 2.3.1.74) are key enzymes that catalyze the first committed step in flavonoid biosynthesis. In this study, we isolated a chalcone synthase, named NtCHS6, from Nicotiana tabacum.  This synthase shared high homology with the NSCHSL (Y14507) gene and contained most of the conserved active sites that are in CHS proteins.  The phylogenetic analysis suggested that NtCHS6 protein shared a large genetic distance with other Solanaceae CHS proteins and was the most closely-related to an uncharacterized CHS from Solanum lycopersicum.  The expression analysis indicated
that NtCHS6 was abundantly expressed in leaves, especially in mature leaves.  By scrutinizing its upstream promoter sequences, multiple cis-regulatory elements involved in light and drought responsive were detected.  Furthermore, NtCHS6 expression decreased significantly under dark treatment and increased significantly under drought stress.  Our results suggested that NtCHS6 expression exhibited both light responsiveness and drought responsiveness, and might play important roles in ultraviolet protection and drought tolerance.
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Sod gene of Curvularia lunata is associated with the virulence in maize leaf
GAO Shi-gang, NI Xuan, LI Ying-ying, FU Ke-he, YU Chuan-jin, GAO Jin-xin, WANG Meng, LI Ya-qian, CHEN Jie
2017, 16 (04): 874-883.   DOI: 10.1016/S2095-3119(16)61513-7
Abstract976)      PDF in ScienceDirect      
Curvularia leaf spot, caused mainly by Curvularia lunata, is a widespread plant disease in China.  In the recent years, directional host selection by the pathogen, which likely results in the virulence differentiation in pathogens, is widely reported.  Among the hallmarks potentially associated to pathogen variation in virulence, superoxide dismutase gene Sod has been found to be closely related to the enhancement of virulence.  In the present study, the full-length of Sod was obtained via Blastn alignment against GenBank and the whole genome of C. lunata.  In order to understand the role of Sod in the virulence variation in C. lunata, targeted gene disruption was performed to construct Sod mutants.  The cell wall degrading enzyme (CWDE) activities and toxin production of ΔSod were not distinctly different from wild-type strain CX-3 and its complon.  However, at an early stage of infection, ΔSod virulence appeared to be lower than CX-3 and the complon, while at a later stage, its virulence gradually returned to the level of CX-3 and the complon.  Furthermore, the melanin production of ΔSod was significantly reduced compared to CX-3 and the complon, suggesting that Sod gene influences the virulence by regulating melanin production at an early stage of infection but is not essential for pathogenicity.  However, the disruption of Sod did not significantly affect the transcriptional expression of the melanin biosynthesis-associated genes, brn1 and scd.  Therefore, we infer that Sod in C. lunata are involved, to some extent, with the virulence in maize leaf, but still needs further studies to have a clear understanding of its mechanism.
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Identification of suitable reference genes in leaves and roots of rapeseed (Brassica napus L.) under different nutrient deficiencies
HAN Pei-pei, QIN Lu, LI Yin-shui, LIAO Xiang-sheng, XU Zi-xian, HU Xiao-jia, XIE Li-hua, YU Chang-bing, WU Yan-feng, LIAO Xing
2017, 16 (04): 809-819.   DOI: 10.1016/S2095-3119(16)61436-3
Abstract760)      PDF in ScienceDirect      
Nutrient deficiency stresses often occur simultaneously in soil.  Thus, it’s necessary to investigate the mechanisms underlying plant responses to multiple stresses through identification of some key stress-responsive genes.  Quantitative real-time PCR (qRT-PCR) is essential for detecting the expression of the interested genes, of which the selection of suitable reference genes is a crucial step before qRT-PCR.  To date, reliable reference genes to normalize qRT-PCR data under different nutrient deficiencies have not been reported in plants.  In this study, expression of ten candidate reference genes was detected in leaves and roots of rapeseed (Brassica napus L.) after implementing different nutrient deficiencies for 14 days.  These candidate genes, included two traditionally used reference genes and eight genes selected from an RNA-Seq dataset.  Two software packages (GeNorm, NormFinder) were employed to evaluate candidate gene stability.  Results showed that VHA-E1 was the highest-ranked gene in leaves of nutrient-deficient rapeseed, while VHA-G1 and UBC21 were most stable in nutrient-deficient roots.  When rapeseed leaves and roots were combined, UBC21, HTB1, VHA-G1 and ACT7 were most stable among all samples.  To evaluate the stabilities of the highest-ranked genes, the relative expression of two target genes, BnTrx1;1 and BnPht1;3 were further determined.  The results showed that the relative expression of BnTrx1;1 depended on reference gene selection, suggesting that it’s necessary to evaluate the stability of reference gene prior to qRT-PCR.  This study provides suitable reference genes for gene expression analysis of rapeseed responses to different nutrient deficiencies, which is essential for elucidation of mechanisms underlying rapeseed responses to multiple nutrient deficiency stresses.
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Evaluation of parameters affecting Agrobacterium-mediated transient expression in citrus
LI Fang, DAI Su-ming, DENG Zi-niu, LI Da-zhi, LONG Gui-you, LI Na, LI Yi, Alexandra Gentile
2017, 16 (03): 572-579.   DOI: 10.1016/S2095-3119(16)61460-0
Abstract762)      PDF in ScienceDirect      
Agrobacterium-mediated transient expression assays are a convenient alternative to stable expression because they are simple, easy to perform, and achieve gene expression rapidly.  This study investigated the factors affecting transient gene expression efficiency in citrus by observing the cryo-sectioning of leaf samples under a laser confocal microscope.  These factors included the composition of the infiltration buffer, the Agrobacterium cell density, the leaf development stage, the incubation temperature, and plant genotype.  The highest transient expression level of yellow fluorescent protein (YFP) was detected in Mexican lime (Citrus aurantifolia) on the third day after the intermediate-aged leaves were infiltrated with the improved infiltration buffer 1 (15 mmol L-1 2-(N-morpholino) ethanesulfonic acid, 10 mmol L-1 MgCl2, and 200 μmol L-1 acetosyringone), which had an optical density of 0.8 and was incubated at 22°C.  Additionally, this transient expression assay was applied to other citrus genotypes.  Of note, trifoliate orange (Poncirus trifoliata) and kumquat (Fortunella obovate) had higher expression efficiency than other six genotypes of the Citrus genus.  Our study provides research basis for the selection of optimization strategies in transient gene expression and improves the method for available genome investigation in citrus.
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The identification of presence/absence variants associated with the apparent differences of growth period structures between cultivated and wild soybeans
LI Yan-fei, HONG Hui-long, LI Ying-hui, MA Yan-song, CHANG Ru-zhen, QIU Li-juan
2016, 15 (2): 262-270.   DOI: 10.1016/S2095-3119(15)61048-6
Abstract1832)      PDF in ScienceDirect      
The cultivated soybean (Glycine max (L.) Merr.) was distinguished from its wild progenitor Glycine soja Sieb. & Zucc. in growth period structure, by a shorter vegetative phase (V), a prolonged reproductive phase (R) and hence a larger R/V ratio. However, the genetic basis of the domestication of soybean from wild materials is unclear. Here, a panel of 123 cultivated and 97 wild accessions were genotyped using a set of 24 presence/absence variants (PAVs) while at the same time the materials were phenotyped with respect to flowering and maturity times at two trial sites located at very different latitudes. The major result of this study showed that variation at PAVs is informative for assessing patterns of genetic diversity in Glycine spp. The genotyping was largely consistent with the taxonomic status, although a few accessions were intermediate between the two major clades identified. Allelic diversity was much higher in the wild germplasm than in the cultivated materials. A significant domestication signal was detected at 11 of the PAVs at 0.01 level. In particular, this study has provided information for revealing the genetic basis of photoperiodism which was a prominent feature for the domestication of soybean. A significant marker-trait association with R/V ratio was detected at 14 of the PAVs, but stripping out population structure reduced this to three. These results will provide markers information for further finding of R/V related genes that can help to understand the domestication process and introgress novel genes in wild soybean to broaden the genetic base of modern soybean cultivars.
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Programmed cell death, antioxidant response and oxidative stress in wheat flag leaves induced by chemical hybridization agent SQ-1
WANG Shu-ping, ZHANG Gai-sheng, SONG Qi-lu, ZHANG Ying-xin, LI Ying, GUO Jia-lin, CHEN Zheng, NIU Na, MA Shou-cai, WANG Jun-wei
2016, 15 (1): 76-86.   DOI: 10.1016/S2095-3119(14)60977-1
Abstract2101)      PDF in ScienceDirect      
Male sterility induced by a chemical hybridization agent (CHA) is an important tool for utilizing crop heterosis. Leaves, especially the flag leaves, as CHA initial recipients play a decisive role in inducing male sterility. To investigate effects of different treatment times of CHA-SQ-1 used, morphological, biochemical and physiological responses of wheat flag leaves were detected in this study. CHA induced programmed cell death (PCD) as shown in terminal deoxynucleotidyl transferase-mediated dUTP nick end-labelling (TUNEL) and DNA laddering analysis. In the early phase, CHA-SQ-1 triggered organelle changes and PCD in wheat leaves accompanied by excess production of reactive oxygen species (O2 -. and H2O2) and down-regulation of the activities of superoxide dismutase (SOD), catalase (CAT) and guaiacol peroxidase (POD). Meanwhile, leaf cell DNAs showed ladder-like patterns on agarose gel, indicating that CHA-SQ-1 led to the activation of the responsible endonuclease. The oxidative stress assays showed that lipid peroxidation was strongly activated and photosynthesis was obviously inhibited in SQ-1-induced leaves. However, CHA contents in wheat leaves gradually reduced along with the time CHA-SQ-1 applied. Young flags returned to an oxidative/antioxidative balance and ultimately developed into mature green leaves. These results provide explanation of the relations between PCD and anther abortion and practical application of CHA for hybrid breeding.
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Identification of additional QTLs for flowering time by removing the effect of the maturity gene E1 in soybean
LU Si-jia, LI Ying, WANG Jia-lin, NAN Hai-yang, CAO Dong, LI Xiao-ming, SHI Dan-ning, FANG Chao, SHI Xin-yi, YUAN Xiao-hui, Jun Abe, LIU Bao-hui, KONG Fan-jiang
2016, 15 (1): 42-49.   DOI: 10.1016/S2095-3119(15)61046-2
Abstract2078)      PDF in ScienceDirect      
The adaptability of soybean to be grown at a wide range of latitudes is attributed to natural variation in the major genes and quantitative trait loci (QTLs) that control flowering time and maturity. Thus, the identification of genes controlling flowering time and maturity and the understanding of their molecular basis are critical for improving soybean productivity. However, due to the great effect of the major maturity gene E1 on flowering time, it is difficult to detect other small-effect QTLs. In this study, aiming to reduce the effect of the QTL, associated with the E1 gene, on the detection of other QTLs, we divided a population of 96 recombinant inbred lines (RILs) into two sub-populations: one with the E1 allele and another with the e1nl allele. Compared with the results of using all 96 recombinant inbred lines, additional QTLs for flowering time were identified in the sub-populations, two (qFT-B1 and qFT-H) in RILs with the E1 allele and one (qFT-J-2) in the RILs with the e1nl allele, respectively. The three QTLs, qFT-B1, qFT-H and qFT-J-2 were true QTLs and played an important role in the regulation of growth period. Our data provides valuable information for the genetic mapping and gene cloning of traits controlling flowering time and maturity and will help a better understanding of the mechanism of photoperiod-regulated flowering and molecular breeding in soybean.
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In vitro establishment of a highly effective method of castor bean (Ricinus communis L.) regeneration using shoot explants
ZHANG Ji-xing, WANG Xiao-yu, FENG Zi-zhou, GENG Xue-jun, MU Sha-moli, HUO Hong-yan, TONG Huan, LI Meng-zhu, LI Yi, CHI Yue, CHEN Yong-sheng
2016, 15 (06): 1417-1422.   DOI: 10.1016/S1671-2927(00)10558
Abstract1089)      PDF in ScienceDirect      
An efficient plant regeneration protocol was established for castor bean (Ricinus communis L.), in which 0.3 mg L–1 thidiazuron (TDZ) induced shoot clusters and increased the number of adventitious shoots from hypocotyl tissue. Our results showed that treatment under dark conditions significantly promoted the average number of shoots per explant to 37.36±4.54 (with a 6-d treatment). Modified 1/2 Murashige and Skoog (MS) basal medium supplemented with 440 mg L–1 Ca2+, 0.2 mg L–1 gibberellic acid and 0.1 mg L–1 TDZ significantly increased shoot elongation rates and lowered vitrification rates. Furthermore, 1/2 MS media supplemented with 0.2 mg L–1 1-naphthaleneacetic acid induced a higher rooting rate compared with other culture conditions.
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Effects of different nitrogen fertilizer management practices on wheat yields and N2O emissions from wheat fields in North China
LIU Ya-nan, LI Ying-chun, PENG Zheng-ping, WANG Yan-qun, MA Shao-yun, GUO Li-ping, LIN Er-da, HAN Xue
2015, 14 (6): 1184-1191.   DOI: 10.1016/S2095-3119(14)60867-4
Abstract2177)      PDF in ScienceDirect      
Nitrogen (N) is one of the macronutrients required for plant growth, and reasonable application of N fertilizers can increase crop yields and improve their quality. However, excessive application of N fertilizers will decrease N use efficiency and also lead to increases in N2O emissions from agricultural soils and many other environmental issues. Research on the effects of different N fertilizer management practices on wheat yields and N2O emissions will assist the selection of effective N management measures which enable achieving high wheat yields while reducing N2O emissions. To investigate the effects of different N management practices on wheat yields and soil N2O emissions, we conducted field trials with 5 treatments of no N fertilizer (CK), farmers common N rate (AN), optimal N rate (ON), 20% reduction in optimal rate+dicyandiamide (ON80%+DCD), 20% reduction in optimal rate+nano-carbon (ON80%+NC). The static closed chamber gas chromatography method was used to monitor N2O emissions during the wheat growing season. The results showed that there were obvious seasonal characteristics of N2O emissions under each treatment and N2O emissions were mainly concentrated in the sowing- greening stage, accounting for 54.6–68.2% of the overall emissions. Compared with AN, N2O emissions were decreased by 23.1, 45.4 and 33.7%, respectively, under ON, ON80%+DCD and ON80%+NC, and emission factors were declined by 22.2, 66.7 and 33.3%, respectively. Wheat yield was increased significantly under ON80%+DCD and ON80%+NC by 12.3 and 11.9%, respectively, relative to AN while there was no significant change in yield in the ON treatment. Compared with ON, overall N2O emissions were decreased by 29.1 and 13.9% while wheat yields improved by 18.3 and 17.9% under ON80%+DCD and ON80%+NC, respectively. We therefore recommend that ON80%+DCD and ON80%+NC be referred as effective N management practices increasing yields while mitigating emissions.
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The Minimal Active Fragment of the Cry1Ai Toxin is Located Between 36I and 605I
ZHOU Zi-shan, LIN Hui-yan, LI Ying, SHU Chang-long, SONG Fu-ping , ZHANG Jie
2014, 13 (5): 1036-1042.   DOI: 10.1016/S2095-3119(13)60532-8
Abstract1894)      PDF in ScienceDirect      
The novel cry1Ai gene that cloned from Bacillus thuringiensis strain SC6H8 encoded a protein exhibiting strong toxicity against Plutella xylostella and Chilo suppressalis in our previous study. Using the available information for the active fragments of other Cry toxins, eight truncated fragments were constructed to identify the minimal active fragment of Cry1Ai. All truncated fragments were expressed in Escherichia coli strain BL21 (DE3), and the insecticidal activity against 2nd- instar P. xylostella larvae was assessed using full-length Cry1Ai as a positive control. The results indicate that the minimal active fragment of the Cry1Ai toxin against P. xylostella is located between amino acid residues 36I and 605I, which is smaller than the regions previously reported for Cry1A. The first two amino acids (34T and 35P) on helix α-1 and whole helix α-2 of domain I and sheet β-32 of domain III are necessary for Cry1Ai toxin to keep its toxicity against P. xylostella.
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Development of Double Antibody Sandwich ELISA for Detection of Duck or Goose Flavivirus
NIU Hui-min, HUANG Xin-mei, HAN Kai-kai, LIU Yu-zhuo, ZHAO Dong-min, ZHANG Jing-feng, LIU Fei, LI Tong-tong, ZHOU Xiao-bo, LI Xiang-rui , LI Yin
2013, 12 (9): 1638-1643.   DOI: 10.1016/S2095-3119(13)60332-9
Abstract1229)      PDF in ScienceDirect      
In order to establish double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) for detection of duck or goose flavivirus, polyclonal antibody against the flavivirus strain JS804 in geese and monoclonal antibody against the E protein of flavivirus strain JS804 in geese were used as the capture antibody and detection antibody, respectively. The optimal dilution of the capture antibody and detecting antibody capable of detecting the flavivirus strain JS804 in geese were 1:3 200 and 1:160 in the check-board titration, respectively. The reaction time of sample was 1 h, and the optimal working dilution of HRP-labeled goat-anti-mouse IgG was 1:10 000. The positive standard value was 0.247 (OD450 nm). The geese flavivirus could be detected at a minimal concentration of 1.875 μg mL-1. The ELISA had no cross-reaction with Newcastle disease virus (NDV), Avian influenza virus (AIV), Infectious bronchitis virus (IBV), Infectious bursal disease virus (IBDV), Duck hepatitis virus (DHV), and Gosling plague virus (GPV). Twenty clinical samples were detected by the DAS-ELISA and RT-PCR respectively, with the agreement rate of 75%. The results revealed that the DAS-ELISA possessed favorable specificity and higher sensitivity, indicating a suitable method for rapid detection of the duck or goose flavivirus.
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