Abdelrahman M, Wei Z, Rohila J S, Zhao K. 2021.
Multiplex genome-editing technologies for revolutionizing plant biology and
crop improvement. Frontiers in Plant Science, 12,
721203.
Aman R, Ali Z, Butt H, Mahas A, Aljedaani F, Khan M Z,
Ding S W, Mahfouz M. 2018. RNA virus interference via CRISPR/Cas13a system in
plants. Genome Biology, 19, 1.
Bennypaul H, Gill U S. 2022. Barley stripe mosaic virus
(BSMV)-based virus-induced gene silencing to functionally characterize genes in
wheat and barley. Methods in Molecular Biology, 2408,
85–93.
Berthomieu P, Jouanin L. 1992. Transformation of rapid
cycling cabbage (Brassica oleracea var. capitata) with Agrobacterium rhizogenes. Plant Cell Reports, 11, 334–338.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay
S, Lahaye T, Nickstadt A, Bonas U. 2009. Breaking the code of DNA binding
specificity of TAL-type III effectors. Science, 326, 1509–1512.
Bortesi L, Fischer R. 2015. The CRISPR/Cas9 system for
plant genome editing and beyond. Biotechnology Advances, 33,
41–52.
Bouzroud S, Gasparini K, Hu G, Barbosa M A M, Rosa B L,
Fahr M, Bendaou N, Bouzayen M, Zsögön A, Smouni A, Zouine M. 2020. Down regulation
and loss of auxin response factor 4 function using CRISPR/Cas9 alters plant
growth, stomatal function and improves tomato tolerance to salinity and osmotic
stress. Genes, 11, 272.
Campisi L, Fambrini M, Michelotti V, Salvini M, Giuntini
D, Pugliesi C. 2006. Phytoene accumulation in sunflower decreases the
transcript levels of the phytoene synthase gene. Plant Growth Regulation, 48, 79–87.
Cazzonelli C I, Pogson B I. 2010. Source to sink:
Regulation of carotenoid biosynthesis in plants. Trends in Plant Science, 15, 266–274.
Chen S Y, Zhang N, Zhou G H, Hussain S, Ahmed S, Tian H
N, Wang S C. 2021. Knockout of the entire family of AITR genes in Arabidopsis leads to enhanced drought and salinity tolerance without fitness costs. BMC Plant Biology, 21, 137.
Christian M, Qi Y, Zhang Y, Voytas D F. 2013. Targeted
mutagenesis of Arabidopsis thaliana using engineered TAL effector
nucleases. G3: Genes Genomes Genetics, 3,
1697–1705.
Cong L, Ran F A, Cox D, Lin S L, Barretto R, Habib N,
Hsu P D, Wu X B, Jiang W Y, Marraffini L A, Zhang F. 2013. Multiplex genome
engineering using CRISPR/Cas systems. Science, 339, 819–823.
Curtis I S, Nam H G. 2001. Transgenic radish (Raphanus sativus L. longipinnatus Bailey) by floral-dip method - plant
development and surfactant are important in optimizing transformation
efficiency. Transgenic Research, 10, 363–371.
Fagerlund R D, Staals R H J, Fineran P C. 2015. The Cpf1
CRISPR-Cas protein expands genome-editing tools. Genome Biology, 16,
251.
Gong Y, Li Y, Liu D, Jiang L, Liang H, Wu Y, Wang F,
Yang J. 2023. Analysis of lysine acetylation in tomato spot wilt virus
infection in Nicotiana benthamiana. Frontiers in Microbiology, 14, 1046163.
He Y H, Zhang Z R, Xu Y P, Chen S Y, Cai X Z. 2022.
Genome-wide identification of rapid alkalinization factor family in Brassica napus and functional analysis of BnRALF10 in immunity to Sclerotinia sclerotiorum. Frontiers in Plant Science, 13,
877404.
Hsieh M H, Lu H C, Pan Z J, Yeh H H, Wang S S, Chen W H,
Chen H H. 2013. Optimizing virus-induced gene silencing efficiency with Cymbidium mosaic virus in Phalaenopsis flower. Plant Science, 201,
25–41.
Hu Z, He Z, Li Y, Wang Q, Yi P, Yang J, Yang C,
Borovskii G, Cheng X, Hu R, Zhang W. 2023. Transcriptomic and metabolic
regulatory network characterization of drought responses in tobacco. Frontiers in Plant Science, 13, 1067076.
Huang Y, Cui L, Chen W F, Liu Z X, Yuan W L, Zhu F J,
Jiao Z B, Zhang Z X, Deng X H, Wang L P, Qiu Z M, Yan C H. 2022. Comprehensive
analysis of NAC transcription factors and their expressions during taproot
coloration in radish (Raphanus sativus L.). Scientia Horticulturae, 299, 111047.
Kim Y G, Cha J, Chandrasegaran S. 1996. Hybrid
restriction enzymes: Zinc finger fusions to Fok I cleavage domain. Proceedings of the National Academy of Sciences of the United States of America, 93,
1156–1160.
Li F Q, Tzfadia O, Wurtzel E T. 2009. The phytoene
synthase gene family in the Grasses: Subfunctionalization provides
tissue-specific control of carotenogenesis. Plant Signaling and Behavior, 4, 208–211.
Li Z F, Pi Y, Fan J M, Yang X X, Zhai C S, Chen H, Wang
F, Ding J, Gu T T, Li Y, Wu H. 2022. High mobility group A3 enhances
transcription of the DNA demethylase gene SlDML2 to promote tomato fruit
ripening. Plant Physiology, 189, 315–328.
Liu J X, Li T, Wang H, Liu Y H, Feng K, Duan A Q, Liu H,
Shu S, Xiong A S. 2022. CRISPR/Cas9-mediated precise targeted mutagenesis of
phytoene desaturase in celery. Horticulture Research, 9,
1-3.
Lowe K, Wu E, Wang N, Hoerster G, Hastings C, Cho M J,
Scelonge C, Lenderts B, Chamberlin M, Cushatt J, Wang L J, Ryan L, Khan T,
Chow-Yiu J, Hua W, Yu M, Banh J, Bao Z M, Brink K, Igo E, et al. 2016. Morphogenic regulators baby boom and Wuschel improve monocot
transformation. The Plant Cell, 28, 1998–2015.
Ma C F, Liu M C, Li Q F, Si J, Ren X S, Song H Y. 2019.
Efficient BoPDS gene editing in cabbage by the CRISPR/Cas9 system. Horticultural Plant Journal, 5, 6.
Ma X, Liu Y G. 2016. CRISPR/Cas9-based multiplex genome
editing in monocot and dicot plants. Current Protocols in Molecular Biology, 115, 1–21.
Mitsui Y, Shimomura M, Komatsu K, Namiki N,
Shibata-Hatta M, Imai M, Katayose Y, Mukai Y, Kanamori H, Kurita K, Kagami T,
Wakatsuki A, Ohyanagi H, Ikawa H, Minaka N, Nakagawa K, Shiwa Y, Sasaki T.
2015. The radish genome and comprehensive gene expression profile of tuberous
root formation and development. Scientific Reports, 5,
10835.
Muntha S T, Zhang L L, Zhou Y F, Zhao X, Hu Z Y, Yang J
H, Zhang M F. 2019. Phytochrome A signal transduction 1 and CONSTANS-LIKE 13
coordinately orchestrate shoot branching and flowering in leafy Brassica juncea. Plant Biotechnology Journal, 17,
1333–1343.
Muthappa S K, Mysore K S. 2011. Virus-induced gene
silencing can persist for more than 2 years and also be transmitted to progeny
seedlings in Nicotiana benthamiana and tomato. Plant Biotechnology Journal, 9, 797–806.
Muto N, Komatsu K, Matsumoto T. 2021. Efficient Agrobacterium-mediated
genetic transformation method using hypocotyl explants of radish (Raphanus sativus L.). Plant Biotechnology, 38, 457–461.
Muto N, Matsumoto T. 2022. CRISPR/Cas9-mediated genome
editing of RsGL1a and RsGL1b in radish (Raphanus sativus L.). Frontiers in Plant Science, 13, 1–11.
Ota S, Hisano Y, Ikawa Y, Kawahara A. 2014. Multiple
genome modifications by the CRISPR/Cas9 system in zebrafish. Genes to Cells, 19, 555–564.
Park C H, Yeo H J, Lim H S, Hyeon H, Kim J K, Park S U.
2022. Gene expression and metabolic analyses of nontransgenic and AtPAP1
transgenic tobacco infected with Potato Virus X (PVX). Journal of Agricultural and Food Chemistry, 19, 5838–5848.
Peele C, Jordan C V, Muangsan N, Turnage M, Egelkrout E,
Eagle P, Hanley-Bowdoin L, Robertson D. 2001. Silencing of a meristematic gene
using geminivirus-derived vectors. The Plant Journal, 27,
357–366.
Pervitasari A N, Nugroho A B D, Kin D H, Kim J K, Jung W
H. 2022. An efficient Agrobacterium tumefaciens-mediated
transformation of apical meristem in radish (Raphanus sativus L.)
using a needle perforation. Plant Cell, Tissue and Organ Culture, 148, 305–318.
Schuck J, Gursinsky T, Pantaleo V, Burgyan J, Behrens S
E. 2013. AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system. Nucleic Acids Research, 41, 5090–5103.
Shan Q W, Wang Y P, Li J, Zhang Y, Chen K L, Liang Z,
Zhang K, Liu J X, Xi J Z J, Qiu J L, Gao C X. 2013. Targeted genome
modification of crop plants using a CRISPR-Cas system. Nature Biotechnology, 31, 686–688.
Singh K, Gupta K, Tyagi V, Rajkumar S. 2020. Plant
genetic resources in India: Management and utilization. Vavilovskii Zhurnal Genet Selektsii, 24, 306–314.
Soyk S, Müller N A, Park S J, Schmalenbach I, Jiang K,
Hayama R, Zhang L, Eck J V, Jiménez-Gómez J M, Lippman Z B. 2017. Variation in
the flowering gene SELF PRUNING 5G promotes day-neutrality and
early yield in tomato. Nature Genetics, 49, 162–168.
Steinbrenner S J, Sandmann G S. 2006. Transformation of
the green alga Haematococcus pluvialis with a phytoene desaturase for
accelerated astaxanthin biosynthesis. Applied and Environmental Microbiology, 72, 7477–7484.
Di Stilio V S, Kumar R A, Oddone A M, Tolkin T R, Salles
P, McCarty K. 2010. Virus-induced gene silencing as a tool for comparative
functional studies in Thalictrum. PLoS ONE, 5,
e12064.
Sudhir K, Glen S, Li M, Christina K, Koichiro T. 2018.
MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549.
Tanaka N, Hayakawa M, Mano Y, Ohkawa H, Matsui C. 1985.
Infection of turnip and radish storage roots with Agrobacterium rhizogenes. Plant Cell Reports, 4, 74–77.
Wang K, Shi L, Liang X N, Zhao P, Wang W X, Liu J X,
Chang Y N, Hiei Y, Yanagihara C, Du L P, Ishida Y, Ye X G. 2022a. The gene TaWOX5 overcomes genotype dependency in wheat genetic transformation. Nature Plants, 8, 110–117.
Wang K, Xu L, Wang Y, Ying J L, Li J X, Dong J H, Li C,
Zhang X L, Liu L W. 2022b. Genome-wide characterization of homeodomain-leucine
zipper genes reveals RsHDZ17 enhances the heat tolerance in radish (Raphanus sativus L.). Physiologia Plantarum, 174, e13789.
Wang Q B, Wang Y P, Sun H H, Sun L, Zhang L. 2020.
Transposon-induced methylation of the RsMYB1 promoter disturbs
anthocyanin accumulation in red-fleshed radish. Journal of Experimental Botany, 71, 2537–2550.
Xiao Z L, Xing M M, Liu X, Fang Z Y, Yang L M, Zhang Y
Y, Wang Y, Zhuang M, Lv H H. 2020. An efficient virus-induced gene silencing
(VIGS) system for functional genomics in Brassicas using a cabbage leaf curl
virus (CaLCuV)-based vector. Planta, 252, 42.
Xie X, Ma X, Zhu Q, Zeng D, Li G, Liu Y G. 2017.
CRISPR-GE: A convenient software toolkit for CRISPR-based genome editing. Molecular Plant, 10, 1246–1249.
Xu H, Xu L F, Yang P P, Cao Y W, Tang Y C, He G R, Yuan
S X, Lei J Y, Ming J. 2019. Virus-induced Phytoene Desaturase (PDS)
gene silencing using Tobacco rattle virus in Lilium×formolongi. Horticultural Plant Journal, 5, 31–38.
Xu L, Wang Y, Dong J H, Zhang W, Tang M J, Zhang W L,
Wang K, Chen Y L, Zhang X L, He Q, Zhang X Y, Wang K, Wang L, Ma Y B, Xia K,
Liu L W. 2023. A chromosome-level genome assembly of radish (Raphanus sativus L.) reveals insights into genome adaptation and differential bolting
regulation. Plant Biotechnology Journal, 21,
990–1004.
Xu Z S, Feng K, Xiong A S. 2019. CRISPR/Cas9-mediated
multiply targeted mutagenesis in orange and purple carrot plants. Molecular Biotechnology, 61, 191–199.
Yang H, Gao P, Rajashankar K R, Patel D J. 2016.
PAM-dependent target DNA recognition and cleavage by C2c1 CRISPR-Cas
endonuclease. Cell, 167, 1814–1828.
Yu J, Yang X D, Wang Q, Gao L W, Yang Y, Xiao D, Liu T
K, Li Y, Hou X L, Zhang C W. 2018. Efficient virus-induced gene silencing in Brassica rapa using a turnip yellow mosaic virus vector. Biologia Plantarum, 62, 826–834.
Zhang H M, Li S, Yang L, Cai G H, Chen H M, Gao D L, Lin
T, Cui Q Z, Wang D H, Li Z, Cai R, Bai S N, Lucas W J, Huang S W, Zhang Z H,
Sun J J. 2021. Gain-of-function of the 1-aminocyclopropane-1-carboxylate
synthase gene ACS1G induces female flower development in cucumber
gynoecy. The Plant Cell, 33, 306–321.
Zhang Y, Zhou P, Bozorov T A, Zhang D Y. 2021.
Application of CRISPR/Cas9 technology in wild apple (Malus sieverii)
for paired sites gene editing. Plant Methods, 17, 79.
Zhu C X, Song Y Z, Yin G H, Wen F J. 2009. Induction of
RNA-mediated multiple viral resistance to Potato virus y, Tobacco
mosaic virus and Cucumber mosaic virus. Journal of Phytopathology, 157, 101–107.
|