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Combining nitrogen effects and metabolomics to reveal the response mechanisms to nitrogen stress and the potential for nitrogen reduction in maize
LU Yan-li, SONG Gui-pei, WANG Yu-hong, WANG Luo-bin, XU Meng-ze, ZHOU Li-ping, WANG Lei
2023, 22 (9): 2660-2672.   DOI: 10.1016/j.jia.2023.03.002
Abstract217)      PDF in ScienceDirect      

The physiological and metabolic differences in maize under different nitrogen (N) levels are the basis of reasonable N management, which is vital in improving fertilizer utilization and reducing environmental pollution.  In this paper, on the premise of defining the N fertilizer efficiency and yield under different long-term N fertilization treatments, the corresponding differential metabolites and their metabolic pathways were analyzed by untargeted metabolomics in maize.  N stress, including deficiency and excess, affects the balance of carbon (C) metabolism and N metabolism by regulating C metabolites (sugar alcohols and tricarboxylic acid (TCA) cycle intermediates) and N metabolites (various amino acids and their derivatives).  L-alanine, L-phenylalanine, L-histidine, and L-glutamine decreased under N deficiency, and L-valine, proline, and L-histidine increased under N excess.  In addition to sugar alcohols and the above amino acids in C and N metabolism, differential secondary metabolites, flavonoids (e.g., kaempferol, luteolin, rutin, and diosmetin), and hormones (e.g., indoleacetic acid, trans-zeatin, and jasmonic acid) were initially considered as indicators for N stress diagnosis under this experimental conditions.  This study also indicated that the leaf metabolic levels of N2 (120 kg ha–1 N) and N3 (180 kg ha–1 N) were similar, consistent with the differences in their physiological indexes and yields over 12 years.  This study verified the feasibility of reducing N fertilization from 180 kg ha–1 (locally recommended) to 120 kg ha–1 at the metabolic level, which provided a mechanistic basis for reducing N fertilization without reducing yield, further improving the N utilization rate and protecting the ecological environment.

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Asset specificity and farmers’ intergenerational succession willingness of apple management
ZHANG Qiang-qiang, GAO Xi-xi, Nazir Muhammad ABDULLAHI, WANG Yue, HUO Xue-xi
2023, 22 (8): 2553-2566.   DOI: 10.1016/j.jia.2023.04.016
Abstract153)      PDF in ScienceDirect      
Understanding the factors behind apple farmers’ willingness to pass on the management of their farms to their descendants is crucial to the continuity of apple production. Due to the high specificity of the human capital, physical assets, land assets, and geographical location in apple production, this study used a binary logistic regression and a mediating effect model to explore the impact of asset specificity on farmers’ intergenerational succession willingness of apple management (FISWAM) and to examine the mediating effects of loss aversion in the impact of asset specificity on the FISWAM. The results showed that about 18.68% of the respondents expressed willingness to transfer their apple business between generations, and the FISWAM was generally weak. In addition to the negative impact of geographical location specificity (GLS), human capital specificity (HCS), physical assets specificity (PAS), and land assets specificity (LAS) can enhance the FISWAM. Loss aversion plays a partial mediating role in the impact of PAS, LAS, and GLS on the FISWAM
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Host niche, genotype, and field location shape the diversity and composition of the soybean microbiome
YANG Hong-jun, YE Wen-wu, YU Ze, SHEN Wei-liang, LI Su-zhen, WANG Xing, CHEN Jia-jia, WANG Yuan-chao, ZHENG Xiao-bo
2023, 22 (8): 2412-2425.   DOI: 10.1016/j.jia.2023.01.006
Abstract281)      PDF in ScienceDirect      
Plant-associated microbes represent a key determinant of plant fitness through acquiring nutrients, promoting growth, and resisting to abiotic and biotic stresses.  However, an extensive characterization of the bacterial and fungal microbiomes present in different plant compartments of soybean in field conditions has remained elusive.  In this study, we investigated the effects of four niches (roots, stems, leaves, and pods), four genotypes (Andou 203, Hedou 12, Sanning 16, and Zhonghuang 13), and three field locations (Jining, Suzhou, and Xuzhou) on the diversity and composition of bacterial and fungal communities in soybean using 16S and internal transcribed spacer rRNA amplicon sequencing, respectively.  The soybean microbiome significantly differed across organs.  Host genotypes explained more variation in stem bacterial community composition and leaf fungal community composition.  Field location significantly affected the composition of bacterial communities in all compartments and the effects were stronger in the root and stem than in the leaf and pod, whereas field location explained more variation in stem and leaf fungal community composition than in the root and pod.  The relative abundances of potential soybean fungal pathogens also differed among host organs and genotypes, reflecting the niches of these microbes in the host and probably their compatibility to the host genotypes.  Systematic profiling of the microbiome composition and diversity will aid the development of plant protection technologies to benefit soybean health.  
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A single nucleotide substitution in the MATE transporter gene regulates plastochron and many noded dwarf phenotype in barley (Hordeum vulgare L.)
GUO Bao-jian, SUN Hong-wei, QI Jiang, HUANG Xin-yu, HONG Yi, HOU Jian, LÜ Chao, WANG Yu-lin, WANG Fei-fei, ZHU Juan, GUO Gang-gang, XU Ru-gen
2023, 22 (8): 2295-2305.   DOI: 10.1016/j.jia.2023.02.006
Abstract366)      PDF in ScienceDirect      
In higher plants, the shoot apical meristem produces lateral organs in a regular spacing (phyllotaxy) and timing (plastochron).  The molecular analysis of mutants associated with phyllotaxy and plastochron would increase our understanding of the mechanism of shoot architecture formation.  In this study, we identified mutant mnd8ynp5 that shows an increased rate of leaf emergence and a larger number of nodes in combination with a dwarfed growth habit from an EMS-treated population of the elite barley cultivar Yangnongpi 5.  Using a map-based cloning strategy, the mnd8 gene was narrowed down to a 6.7-kb genomic interval on the long arm of chromosome 5H.  Sequence analysis revealed that a C to T single-nucleotide mutation occurred at the first exon (position 953) of HORVU5Hr1G118820, leading to an alanine (Ala) to valine (Val) substitution at the 318th amino acid site.  Next, HORVU5Hr1G118820 was defined as the candidate gene of MND8 encoding 514 amino acids and containing two multidrug and toxic compound extrusion (MATE) domains.  It is highly homologous to maize Bige1 and has a conserved function in the regulation of plant development by controlling the leaf initiation rate.  Examination of modern barely varieties showed that Hap-1 was the dominant haplotype and was selected in barley breeding around the world.  Collectively, our results indicated that mnd8ynp5 is a novel allele of the HORVU5Hr1G118820 gene that is possibly responsible for the shortened plastochron and many noded dwarf phenotype in barley.
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Mapping winter rapeseed in South China using Sentinel-2 data based on a novel separability index
TAO Jian-bin, ZHANG Xin-yue, WU Qi-fan, WANG Yun
2023, 22 (6): 1645-1657.   DOI: 10.1016/j.jia.2022.10.008
Abstract230)      PDF in ScienceDirect      
Large-scale crop mapping using remote sensing data is of great significance for agricultural production, food security and the sustainable development of human societies. Winter rapeseed is an important oil crop in China that is mainly distributed in the Yangtze River Valley. Traditional winter rapeseed mapping practices are insufficient since they only use the spectral characteristics during the critical phenological period of winter rapeseed, which are usually limited to a small region and cannot meet the needs of large-scale applications. In this study, a novel phenology-based winter rapeseed index (PWRI) was proposed to map winter rapeseed in the Yangtze River Valley. PWRI expands the date window for distinguishing winter rapeseed and winter wheat, and it has good separability throughout the flowering period of winter rapeseed. PWRI also improves the separability of winter rapeseed and winter wheat, which traditionally have been two easily confused winter crops. A PWRI-based method was applied to the Middle Reaches of the Yangtze River Valley to map winter rapeseed on the Google Earth Engine platform. Time series composited Sentinel-2 data were used to map winter rapeseed with 10 m resolution. The mapping achieved a good result with overall accuracy and kappa coefficients exceeding 92% and 0.85, respectively. The PWRI-based method provides a new solution for high spatial resolution winter rapeseed mapping at a large scale.
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The effects of co-utilizing green manure and rice straw on soil aggregates and soil carbon stability in a paddy soil in southern China
ZHANG Zi-han, NIE Jun, LIANG Hai, WEI Cui-lan, WANG Yun, LIAO Yu-lin, LU Yan-hong, ZHOU Guo-peng, GAO Song-juan, CAO Wei-dong
2023, 22 (5): 1529-1545.   DOI: 10.1016/j.jia.2022.09.025
Abstract260)      PDF in ScienceDirect      
The co-utilization of green manure (GM) and rice straw (RS) in paddy fields has been widely applied as an effective practice in southern China. However, its effects on soil aggregate and soil organic carbon (SOC) stability remain unclear. In the present study, the effect of GM, RS, and co-utilization of GM and RS on particle size distribution of soil aggregates and SOC density fractions were measured in a field experiment. The experiment included six treatments, i.e., winter fallow (WF) without RS return (Ctrl), WF with 50% RS return (1/2RS), WF with 100% RS return (RS), GM without RS return (GM), GM with 50% RS return (GM1/2RS) and GM with 100% RS return (GMRS). The results showed that the proportion of small macro-aggregates (0.25–2 mm) and the mean weight diameter (MWD) of aggregates in the GMRS treatment was greater (by 18.9 and 3.41%, respectively) than in the RS treatment, while the proportion of silt+clay particles (<0.053 mm) was lower (by 14.4%). The concentration of SOC in microaggregates (0.053–0.25 mm) and silt+clay particles was higher in the GMRS treatment than in GM and RS treatments individually. The concentration and proportion of free light organic carbon (fLOC) in aggregates of various particle sizes and bulk soil was greater in the GMRS treatment than the RS treatment, whereas the concentration and proportion of mineral-associated organic carbon in small macroaggregates, microaggregates, and bulk was lower in the GMRS treatment than in the RS treatment. The proportion of intra-aggregate particulate organic carbon (iPOC) was greater in the GMRS treatment than in GM treatment. The GMRS treatment had strong positive effects on iPOC in small macroaggregates, suggesting that SOC was transferred from fLOC to iPOC. In conclusion, co-utilizing green manure and rice straw cultivated the SOC pool by increasing the concentration of fLOC and improved soil carbon stability by promoting the sequestration of organic carbon in iPOC as a form of physical protection.
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Ensiling vine tea (Ampelopsis grossedentata) residue with Lactobacillus plantarum inoculant as an animal unconventional fodder
WANG Yuan, ZHOU Hong-zhang, GAO Yu, WANG Ning-wei, LIU Han, YANG Fu-yu, NI Kui-kui
2023, 22 (4): 1172-1183.   DOI: 10.1016/j.jia.2022.10.001
Abstract221)      PDF in ScienceDirect      

The study aimed to evaluate the application of silage fermentation in storing vine tea residue.  Dynamic of fermentation-related product, chemical component and bacterial community of silage with or without Lactobacillus plantarum F1 inoculant were analyzed.  The results showed that F1 treatment had a significant (P<0.05) impact on the lactic acid and ammoniacal nitrogen concentrations and pH value.  Total phenols were well preserved in both treatments.  After 30 days of ensiling, Lplantarum occupied the majority of Lactobacillus genus (more than 95%) in all silage samples.  Spearman revealed a positive (P<0.01) correlation between lactic acid content and Lactobacillus.  Overall, ensiling vine tea residue with Lplantarum can effectively preserve the nutritional attributes and total phenols, which offers a new insight into utilizing vine tea residue.

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Characterization of the microbial community response to replant diseases in peach orchards
LI Wei-hua, CHEN Peng, WANG Yu-zhu, LIU Qi-zhi
2023, 22 (4): 1082-1092.   DOI: 10.1016/j.jia.2022.08.121
Abstract213)      PDF in ScienceDirect      

This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees.  The replanted soil (RS) and nonreplanted soil (NRS) were collected from peach orchards with different growth years (1, 3, 5, 7, 9, 11, and 13 years) in the same region.  The soil bacterial and fungal community diversities were analyzed by high-throughput sequencing technology.  Redundancy analysis (RDA) was used to show the correlation between the soil microbial community and environmental variables.  The alpha diversities of the bacterial and fungal communities indicated that RS contained a higher abundance of bacterial and fungal operational taxonomic units (OTUs) than NRS.  NMDS and ANOSIM analyses showed that the soil bacterial and fungal communities were significantly (P<0.01) affected by planting years, and that the main changes occurred in the first and ninth planting years.  The presence of the bacterial orders Sphingobacteriales, Burkholderiales and Actinomycetales changed significantly after replanting.  Some bacteria associated with bioremediation, such as Burkholderiales and Intrasporangiaceae, and some harmful pathogens, such as Penicillium and Ophiostomatales, significantly increased after replanting (LDA score>3.0).  In addition, the soil nutrient contents were lower in RS than in NRS in the early stage (1–5 years), and the RDA showed that bacterial and fungal phyla are closely associated with environmental variables, including the potential of hydrogen (pH), ammonium nitrogen (AN), available phosphorus (AP) and available potassium (AK).  These results lead to a deeper understanding of the microbial responses to replanting in peach orchards. 

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Effects of erect panicle genotype and environment interactions on rice yield and yield components
WANG Yuan-zheng, Olusegun IDOWU, WANG Yun, HOMMA Koki, NAKAZAKI Tetsuya, ZHENG Wen-jing, XU Zheng-jin, SHIRAIWA Tatsuhiko
2023, 22 (3): 716-726.   DOI: 10.1016/j.jia.2022.08.013
Abstract241)      PDF in ScienceDirect      

The dense and erect panicle (EP) genotype conferred by DEP1 has been widely used in the breeding of high-yield Chinese japonica rice varieties.  However, the breeding value of the EP genotype has rarely been determined at the plant population level.  Therefore, the effects of the interaction of EP genotype and the environment at different locations and times on rice yield and its various components were investigated in this study.  Two sets of near-isogenic lines (NILs) of EP and non-EP (NEP) genotypes with Liaojing 5 (LG5) and Akitakomachi (AKI) backgrounds were grown in the field in 2016 and 2017 in Shenyang, China, and Kyoto, Japan.  In 2018, these sets were grown only in Kyoto, Japan.  The average yields of the EP and NEP genotypes were 6.67 and 6.13 t ha−1 for the AKI background, and 6.66 and 6.58 t ha−1 for the LG5 background, respectively.  The EP genotype positively affected panicle number (PN) and grain number per square meter (GNPM), mostly resulting in a positive effect on harvest index (HI).  In contrast, the EP genotype exerted a negative effect on thousand-grain weight (KGW).  The ratio of the performance of the EP genotype relative to the NEP genotype in terms of yield and total biomass correlated positively with mean daily solar radiation during a 40-day period around heading.  These results indicate that the effectiveness of the EP genotype depends on the availability of solar radiation, and the effect of this genotype is consistently positive for sink formation, conditional in terms of source capacity, and positive in a high-radiation environment.

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Identifying the critical phosphorus balance for optimizing phosphorus input and regulating soil phosphorus effectiveness in a typical winter wheat-summer maize rotation system in North China
XU Meng-ze, WANG Yu-hong, NIE Cai-e, SONG Gui-pei, XIN Su-ning, LU Yan-li, BAI You-lu, ZHANG Yin-jie, WANG Lei
2023, 22 (12): 3769-3782.   DOI: 10.1016/j.jia.2023.05.030
Abstract156)      PDF in ScienceDirect      

Phosphorus (P) is a nonrenewable resource and a critical element for plant growth that plays an important role in improving crop yield.  Excessive P fertilizer application is widespread in agricultural production, which not only wastes phosphate resources but also causes P accumulation and groundwater pollution.  Here, we hypothesized that the apparent P balance of a crop system could be used as an indicator for identifying the critical P input in order to obtain a high yield with high phosphorus use efficiency (PUE).  A 12-year field experiment with P fertilization rates of 0, 45, 90, 135, 180, and 225 kg P2O5 ha–1 was conducted to determine the crop yield, PUE, and soil Olsen-P value response to P balance, and to optimize the P input.  Annual yield stagnation occurred when the P fertilizer application exceeded a certain level, and high yield and PUE levels were achieved with annual P fertilizer application rates of 90–135 kg P2O5 ha–1.  A critical P balance range of 2.15–4.45 kg P ha–1 was recommended to achieve optimum yield with minimal environmental risk.  The critical P input range estimated from the P balance was 95.7–101 kg P2O5 ha–1, which improved relative yield (>90%) and PUE (90.0–94.9%).  In addition, the P input–output balance helps in assessing future changes in Olsen-P values, which increased by 4.07 mg kg–1 of P for every 100 kg of P surplus.  Overall, the P balance can be used as a critical indicator for P management in agriculture, providing a robust reference for limiting P excess and developing a more productive, efficient and environmentally friendly P fertilizer management strategy.

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Growth of tandem long-mat rice seedlings using controlled release fertilizers: Mechanical transplantation can be more economical and high yielding
HE Wen-jun, HE Bin, WU Bo-yang, WANG Yu-hui, YAN Fei-yu, DING Yan-feng, LI Gang-hua
2023, 22 (12): 3652-3666.   DOI: 10.1016/j.jia.2023.05.007
Abstract179)      PDF in ScienceDirect      
The traditional soil-based rice seedling production methods for mechanical transplanting are resource-intensive, time consuming and laborious. The improvement and optimization of nutrient management in soil-less nursery raising methods like tandem long-mat seedlings (TLMS) are necessary for the resource-efficient cultivation of rice. In the present study, a controlled-release fertilizer (CRF)-polymer-coated compound fertilizer with 3 months release period (PCCF-3M) was applied as seedling fertilizer (SF), and five different dosages of SF (SF-0, SF-10, SF-20, SF-30, and SF-40) were compared with an organic substrate as the control (CK). Among all SF treatments, the best results were obtained with the application of 20 g/tray of SF (SF-20), as the seedling quality and machine transplanting quality were comparable to those of CK. In contrast, the lower dosages (SF-0 and SF-10) resulted in low nitrogen content and reduced shoot growth, while the higher dosages (SF-30 and SF-40) resulted in toxicity (increased malondialdehyde accumulation) and inhibited the root growth. Similarly, SF-20 increased panicle number (5.6–7.0%) and yield (4.3–5.3%) compared with CK, which might be related to the remaining SF entangled in the roots supporting the tiller growth of rice seedlings in the field. Moreover, SF-20 reduced the seedling block weight (53.1%) and cost of seedling production (23.5%) but increased the gross margin, indicating that it was easy to handle and economical. Taken together, our results indicate that SF-20 is a cost-effective way to promote the growth and transplanting efficiency of rice seedlings. To our knowledge, this study is the first to determine the optimum dosage of CRF for the soil-less production of rice seedlings.
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QTL analysis of early flowering of female flowers in zucchini (Cucurbita pepo L.)
QU Shu-ping, YANG Dan, YU Hai-yang, CHEN Fang-yuan, WANG Ke-xin, DING Wen-qi, XU Wen-long, WANG Yun-li
2023, 22 (11): 3321-3330.   DOI: 10.1016/j.jia.2022.09.009
Abstract188)      PDF in ScienceDirect      

Early flowering promotes early maturity, production, and the capacity to counteract biotic and abiotic stresses, making it an important agronomic trait in zucchini.  The present study demonstrated that the zucchini inbred line ‘19’ consistently flowered early, taking significantly fewer days to bloom the first female flower (DFF) than the inbred line ‘113’.  Genetic analysis revealed that DFF, an inheritable quantitative trait, is controlled by multiple genes.  Based on the strategy of quantitative trait locus (QTL) sequencing (QTL-seq) combined with linkage analysis, three QTLs for DFF were identified on chromosomes 4, 11, and 20.  This study used additional F2 populations grown under different environmental conditions for QTL mapping analysis of DFF with insertion/deletion (InDel) markers to validate these results.  Using the composite interval mapping (CIM) method of R/qtl software, we only identified one major locus under all environmental conditions, located in a 117-kb candidate region on chromosome 20.  Based on gene annotation, gene sequence alignment, and qRT-PCR analysis, we found that the Cp4.1LG20g08050 gene encoding a RING finger protein may be a candidate gene for the opposite regulation of early flowering in zucchini.  In summary, these results lay a foundation for a better understanding of early flowering and improving early flowering-based breeding strategies in zucchini.

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Development and application of KASP marker for high throughput detection of the seedless trait in grapevine
WANG Fu-qiang, BIAN Lu, QIU Peng-peng, GUO Shuo, GUO Jing-han, GUO Chen-shuo, JIANG Jian-fu, LIU Chong-huai, WANG Yong, LIU Guo-tian, WANG Yue-jin, XU Yan
2023, 22 (11): 3269-3283.   DOI: 10.1016/j.jia.2023.10.014
Abstract207)      PDF in ScienceDirect      

Molecular marker-assisted selection (MAS) can significantly accelerate and improve the efficiency of the breeding process in seedless grape cultivars.  In this study, we developed the KASP_VviAGL11 and VviAGL11_410 markers based on a single nucleotide polymorphism (SNP) site (Chr18: 26889437 (A/C)) of the VviAGL11 gene, and compared them with previously reported SSR markers p3_VvAGL11 and 5U_VviAGL11 by testing 101 cultivars and 81 F1 hybrid progenies.  The results showed that both of the proposed markers obtained 100% accuracy rates in detecting allele A, which was closely associated with the seedless trait in grapes, while p3_VvAGL11 and 5U_VviAGL11 had lower accuracy rates due to their tendency to produce false positives.  After careful evaluation of the technical advantages and disadvantages associated with these markers, we concluded that KASP_VviAGL11 was superior in terms of simplicity, cost-effectiveness, efficiency, and accuracy.  Thus, we optimized the process of molecular MAS for seedless grapes, focusing on the KASP_VviAGL11 marker as a central component, to provide key technical support for the development of new seedless grape cultivars.

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The collagen type I alpha 1 chain gene is an alternative safe harbor locus in the porcine genome
XIANG Guang-ming, ZHANG Xiu-ling, XU Chang-jiang, FAN Zi-yao, XU Kui, WANG Nan, WANG Yue, CHE Jing-jing, XU Song-song, MU Yu-lian, LI Kui, LIU Zhi-guo
2023, 22 (1): 202-213.   DOI: 10.1016/j.jia.2022.08.105
Abstract283)      PDF in ScienceDirect      

Efficient and stable expression of foreign genes in cells and transgenic animals is important for gain-of-function studies and the establishment of bioreactors.  Safe harbor loci in the animal genome enable consistent overexpression of foreign genes, without side effects.  However, relatively few safe harbor loci are available in pigs, a fact which has impeded the development of multi-transgenic pig research.  We report a strategy for efficient transgene knock-in in the endogenous collagen type I alpha 1 chain (COL1A1) gene using the clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) system.  After the knock-in of a 2A peptide-green fluorescence protein (2A-GFP) transgene in the last codon of COL1A1 in multiple porcine cells, including porcine kidney epithelial (PK15), porcine embryonic fibroblast (PEF) and porcine intestinal epithelial (IPI-2I) cells, quantitative PCR (qPCR), Western blotting, RNA-seq and CCK8 assay were performed to assess the safety of COL1A1 locus.  The qPCR results showed that the GFP knock-in had no effect (P=0.29, P=0.66 and P=0.20 for PK15, PEF and IPI-2I cells, respectively) on the mRNA expression of COL1A1 gene.  Similarly, no significant differences (P=0.64, P=0.48 and P=0.80 for PK15, PEF and IPI-2I cells, respectively) were found between the GFP knock-in and wild type cells by Western blotting.  RNA-seq results revealed that the transcriptome of GFP knock-in PEF cells had a significant positive correlation (P<2.2e–16) with that of the wild type cells, indicating that the GFP knock-in did not alter the global expression of endogenous genes.  Furthermore, the CCK8 assay showed that the GFP knock-in events had no adverse effects (P24h=0.31, P48h=0.96, P72h=0.24, P96h=0.17, and P120h=0.38) on cell proliferation of PK15 cells.  These results indicate that the COL1A1 locus can be used as a safe harbor for foreign genes knock-in into the pig genome and can be broadly applied to farm animal breeding and biomedical model establishment

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Border effects of the main and ratoon crops in rice ratooning system
ZHENG Chang, WANG Yue-chao, XU Wen-ba, YANG De-sheng, YANG Guo-dong, YANG Chen, HUANG Jian-liang, PENG Shao-bing
2023, 22 (1): 80-91.   DOI: 10.1016/j.jia.2022.08.048
Abstract537)      PDF in ScienceDirect      

The border effect (BE) is widely observed in crop field experiments, and it has been extensively studied in many crops.  However, only limited attention has been paid to the BE of ratoon rice.  We conducted field experiments on ratoon rice in Qichun County, Hubei Province, Central China in 2018 and 2019 to compare the BE in the main and ratoon crops, and to quantify the contribution of BE in the main crop to that in the ratoon crop.  The BE of two hybrid varieties was measured for the outermost, second outermost, and third outermost rows in each plot of both crops.  To determine the contribution of BE between the two crops, portions of hills in the outermost and second outermost rows were uprooted during the harvest of the main crop so that the second and third outermost rows then became the outermost rows in the ratoon crop.  Overall, the BE on grain yield was greater in the main crop than in the ratoon crop.  In the main crop, the BE on grain yield was 98.3% in the outermost row, which was explained by the BE on panicles m–2, spikelets/panicle, spikelets m–2, and total dry weight.  In the ratoon crop, the BE on grain yield was reduced to 60.9 and 27.6% with and without the contribution of the BE in the main crop, respectively.  Consequently, 55.1% of the BE on grain yield in the ratoon crop was contributed from the main crop.  High stubble dry weight and non-structural carbohydrate (NSC) accumulation at the harvest of the main crop were responsible for the contribution of BE in the main crop to that in the ratoon crop.  Our results suggest that increases in stubble dry weight and NSC accumulation at the harvest of the main crop could be important strategies for developing high-yielding cropping practices in the rice ratooning system.

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Cold plasma promotes Sertoli cell proliferation via AMPK-mTOR signaling pathway
ZHANG Jiao-jiao, LI Ya-qi, SHI Mei, WANG Yu-sha, TANG Yao, WANG Xian-zhong
2022, 21 (9): 2700-2719.   DOI: 10.1016/j.jia.2022.07.010
Abstract295)      PDF in ScienceDirect      

This study investigated cold plasmas for multiple biological applications.  Our previous work has found dielectric barrier discharge plasma improves chicken sperm quality.  The number of Sertoli cells (SCs) decides spermatogenesis.  However, whether cold plasma can regulate SC proliferation remains unclear.  This study explored the effects of cold plasma on immature chicken SC proliferation and the regulation mechanism.  Results showed that cold plasma exposure at 2.4 W for 30 s twice with an interval of 6 h produced (P<0.05) the maximum SC viability, cell growth, and cell cycle progression.  SC proliferation-promoting effect of cold plasma treatment was regulated by increasing (P<0.05) the adenosine triphosphate production and the respiratory enzyme activity in the mitochondria.  This process was potentially mediated by the adenosine monophosphate-activated protein kinase (AMPK)–mammalian target of rapamycin (mTOR) signaling pathway, which was regulated by the microRNA (miRNA) targeting regulation directly and by the intracellular reactive oxygen species homeostasis indirectly.  The cold plasma treatment increased (P<0.01) the miR-7450-5p expression and led to a decreased (P<0.01) AMPKα1 level.  On the other hand, miR-100-5p expression was reduced (P<0.05) and led to an increased (P<0.05) mTOR level in SCs.  A single-stranded synthetic miR-7450-5p antagomir and a double-stranded synthetic miR-100-5p agomir reduced (P<0.05) the SC proliferation.  However, this could be ameliorated (P<0.05) by the cold plasma treatment.  Our findings suggest that appropriate cold plasma treatment provides a safe strategy to improve SC proliferation, which is beneficial to elevating male chicken reproductive capacity.

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PPAR gamma2: The main isoform of PPARγ that positively regulates the expression of the chicken Plin1 gene
SUN Yu-hang, ZHAI Gui-ying, PANG Yong-jia, LI Rui, LI Yu-mao, CAO Zhi-ping, WANG Ning, LI Hui, WANG Yu-xiang
2022, 21 (8): 2357-2371.   DOI: 10.1016/S2095-3119(21)63896-0
Abstract152)      PDF in ScienceDirect      

Perilipin1 (PLIN1) is a major phosphorylated protein that specifically coats the surface of neutral lipid droplets (LDs) in adipocytes and plays a crucial role in regulating the accumulation and hydrolysis of triacylglycerol (TG).  Mammalian studies have shown that Plin1 gene transcription is mainly regulated by peroxisome proliferator-activated receptor-gamma (PPARγ), the master regulator of adipogenesis.  However, the regulatory mechanism of the chicken Plin1 (cPlin1) gene is poorly understood.  The present study aimed to investigate whether Plin1 is regulated by PPARγ in chickens and identify its exact molecular mechanism.  Reporter gene and expression assays showed that PPARγ2, but not PPARγ1, activated (P<0.01) the cPlin1 gene promoter.  An electrophoretic mobility shift assay and mutational analysis revealed that PPARγ2 bound to a special site in the cPlin1 gene promoter to enhance its expression.  In summary, our results show that PPARγ promotes the expression of the cPlin1 gene and that PPARγ2 is the main regulatory isoform.

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An economic and viable approach to improve wheat quality in Qinghai–Tibetan Plateau, China
WANG Yu-jiao, TAO Zhi-qiang, WANG De-mei, WANG Yan-jie, YANG Yu-shuang, ZHAO Guang-cai, SHI Shu-bing, CHANG Xu-hong
2022, 21 (8): 2227-2240.   DOI: 10.1016/S2095-3119(21)63677-8
Abstract156)      PDF in ScienceDirect      

Wheat flour products are the main dietary component of the Qinghai–Tibetan Plateau (QTP) population in China.  However, the high altitude restricts the local wheat quality and quantity, and the applied nitrogen rate is higher than the optimal rate for wheat planting.  In this study, we considered whether reducing the amount of nitrogen fertilizer and introducing the superior varieties from the North China Plain (NCP) are viable ways to increase the wheat quality and quantity in the QTP.  Three and four winter wheat cultivars from QTP and NCP, respectively, were planted in Lhasa at an altitude of 3 647 m with reduced topdressing nitrogen application at the jointing stage.  The wheat from NCP exhibited higher grain hardness index and test weight, and better flour and dough quality.  Reducing the topdressing nitrogen fertilizer from 135 to 75 kg N ha−1 at the jointing stage (with the same basal fertilization of 105 kg N ha−1) did not significantly (P<0.05) affect the grain yield, grain quality, flour quality or dough quality in any of the cultivars.  In summary, introducing high-quality winter wheat varieties from the NCP to the Lhasa plateau is a viable way to enhance the wheat supply and quality in the QTP.  Reducing a certain amount of the nitrogen fertilizer is an economic and feasible approach for the QTP region.

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Transcriptional profiling between yellow- and black-seeded Brassica napus reveals molecular modulations on flavonoid and fatty acid content
RONG Hao, YANG Wen-jing, XIE Tao, WANG Yue, WANG Xia-qin, JIANG Jin-jin, WANG You-ping
2022, 21 (8): 2211-2226.   DOI: 10.1016/S2095-3119(21)63656-0
Abstract225)      PDF in ScienceDirect      

Brassica napus is an important cash crop broadly grown for the vegetable and oil values.  Yellow-seeded Bnapus is preferred by breeders due to its improved oil and protein quality, less pigments and lignin compared with the black-seeded counterpart.  This study compared the differences in flavonoid and fatty acid contents between yellow rapeseed from the progenies of BnapusSinapis alba somatic hybrids and the black-seeded counterpart using RNA-seq analysis.  Through HPLC-PDA-ESI(−)/MS2 analysis, it was found that phenylpropanoids and flavonoids (i.e., isorhamnetin, epicatechin, kaempferol, and other derivatives) in yellow seed were significantly lower than those in black seed.  The fatty acid (FA) content in yellow rapeseed was higher than that in black rapeseed due to the variation of C16:0, C18:0, C18:1, C18:2, and C18:3 contents.  RNA-seq analysis of seeds at four and five weeks after flowering (WAF) indicated that differentially expressed genes (DEGs) between black and yellow rapeseeds were enriched in flavonoid and FA biosynthesis, including BnTT3, BnTT4, BnTT18, and BnFAD2.  Also, genes related to FA biosynthesis, desaturation and elongation (FAD3, LEC1, FUS3, and LPAT2) in yellow seed were up-regulated compared to those in black seed, while genes involved in beta-oxidation cycle (AIM1 and KAT2) of yellow seed were down-regulated compared to those in black seed.  The DEGs related to the variation of flavonoids, phenylpropanoids, and FAs would help improve the knowledge of yellow seed character in Bnapus and promote rapeseed improvement.

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Grain yield and grain moisture associations with leaf, stem and root characteristics in maize
XU Chen-chen, ZHANG Ping, WANG Yuan-yuan, LUO Ning, TIAN Bei-jing, LIU Xi-wei, WANG Pu, HUANG Shou-bing
2022, 21 (7): 1941-1951.   DOI: 10.1016/S2095-3119(20)63598-5
Abstract240)      PDF in ScienceDirect      
Improving grain yield (GY) and reducing grain moisture (GM) are urgent demands for directly harvesting kernels with combine harvesters in maize production.  GY and GM are both related to leaf, stem and root characteristics, but the relationships are not fully understood.  To better understand these relationships, we conducted a field trial involving 12 maize hybrids with two sowing dates in 2017 and 10 maize hybrids with one sowing date in 2019.  GY ranged from 6.5–14.6 t ha–1 in early-sown varieties and 9.3–12.7 t ha–1 in late-sown varieties in 2017, and 5.9–7.4 t ha–1 in 2019, respectively, with corresponding GM variations of 29.8–34.9%, 29.4–34.5% and 31.9–37.1% at harvest.  A large maximum leaf area contributed to a high yield, a fast leaf senescence rate accelerated grain dehydration in the late growth period, and a compact root structure resulted in both of high-yield and fast-grain dehydration.  A strong stem improved lodging resistance but maintained a high GM at harvest, and it is challenging to combine high GY and low GM in maize.  High GY co-existed with low GM in some varieties that should have a rapid grain filling, a relatively long grain-filling duration, and a rapid grain dehydration in the late growth period.  A high daily temperature in the late growth period also improved GY and reduced GM by influencing grain filling and dehydration, suggesting that adjusting the sowing date should be an alternative strategy to combine high GY and low GM in kernel harvesting. 
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Effects of exogenous paclobutrazol and sampling time on the efficiency of in vitro embryo rescue in the breeding of new seedless grape varieties
XU Teng-fei, GUO Yu-rui, YUAN Xiao-jian, CHU Yan-nan, WANG Xiao-wei, HAN Yu-lei, WANG Wen-yuan, WANG Yue-jin, SONG Rui, FANG Yu-lin, WANG Lu-jun, XU Yan
2022, 21 (6): 1633-1644.   DOI: 10.1016/S2095-3119(21)63815-7
Abstract347)      PDF in ScienceDirect      

Embryo rescue technology plays an important role in seedless grape breeding.  However, the efficiency of embryo rescue, including the embryo formation, germination, and seedling rates, is closely related to the parental genotypes, degree of abortion, growth medium, and plant growth regulators.  In this study, we investigated the effects of different concentrations of paclobutrazol (PAC), a plant growth regulator, and embryo collection times on the embryo formation, germination, and seedling rates for different hybrid combinations of grape breeding varieties used for their aroma and cold-resistance traits.  The results showed that the different PAC concentrations had varying impacts on the development of ovules and embryos from the different grape varieties.  The embryo formation rates of the ‘Sultanina Rose’בBeibinghong’ and ‘Kunxiang Seedless’בTaishan-2’ crosses were the highest under the 5.1 μmol L–1 PAC treatment.  The 1.0 μmol L–1 PAC treatment was optimal for the germination and seedling development of the ‘Sultanina Rose’בBeibinghong’ embryos, whereas the 0.2 μmol L–1 PAC treatment induced the highest germination rate for the ‘Sultanina Rose’בKunxiang Seedless’ cross.  The optimal sampling times for each cross varied as 39 d after pollination (DAP) for the ‘Flame Seedless’בMuscat Hamburg’ cross, 46 DAP for the ‘Kunxiang Seedless’בBeibinghong’ cross, and 41 DAP for the ‘Ruby Seedless’בBeibinghong’ and ‘Fantasy Seedless’בShuangyou’ crosses.  Moreover, the medium modified with 0.5 g L–1 of indole-3-butyric acid allowed the malformed seedlings to develop into plantlets and achieve larger progenies.  This study provides a useful basis for further studies into grape embryo rescue and could improve breeding efforts for new seedless grape varieties.

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Characteristics of lodging resistance of high-yield winter wheat as affected by nitrogen rate and irrigation managements
LI Wen-qian, HAN Ming-ming, PANG Dang-wei, CHEN Jin, WANG Yuan-yuan, DONG He-he, CHANG Yong-lan, JIN Min, LUO Yong-li, LI Yong, WANG Zhen-lin
2022, 21 (5): 1290-1309.   DOI: 10.1016/S2095-3119(20)63566-3
Abstract279)      PDF in ScienceDirect      
High yields of wheat are mainly obtained through a high level of nitrogen and irrigation supplementation.  However, excessive nitrogen and irrigation supplication increase the risk of lodging.  The main objectives of this work were to clarify the capacity of lodging resistance of wheat in response to nitrogen and irrigation, as well as to explore the effective ways of improving lodging resistance in a high-yield wheat cultivar. In this study, field experiments were conducted in the 2015–2016 and 2016–2017 growing seasons.  A wheat cultivar Jimai 22 (JM22), which is widely planted in the northern of Huang-Huai winter wheat region, was grown at Tai’an, Shandong Province, under three nitrogen rates and four irrigation treatments.  The lodging risk was increased with increased nitrogen rate, as indicated by increasing lodging index (LI) and lodging rate across both growing seasons.  With nitrogen increasing, the plant height, the basal internode length and the center of gravity height, which were positively correlated with LI, increased significantly.  While the density of the basal 2nd internode (for culm and leaf sheath) and cell wall component contents, which were negatively correlated with LI, decreased conspicuous along with nitrogen increased.  Increasing irrigation supplementation increased the 2nd internode culm wall thickness, breaking strength and leaf sheath density within limits which increased stem strength.  Among the treatments, nitrogen application at a rate of 240 kg ha–1 and irrigation application at 600 m3 ha–1 at both the jointing and anthesis stages resulted in the highest yield and strongest stem.  A suitable plant height ensures sufficient biomass for high yield, and higher stem stiffness, which was primarily attributed to thicker culm wall, greater density of the culm and leaf sheaths and higher cell wall component contents are the characteristics that should be taken into account to improving wheat lodging resistance.

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Effects of different types of slow- and controlled-release fertilizers on rice yield
WU Qiong, WANG Yu-hui, DING Yan-feng, TAO Wei-ke, GAO Shen, LI Quan-xin, LI Wei-wei, LIU Zheng-hui, LI Gang-hua
2021, 20 (6): 1503-1514.   DOI: 10.1016/S2095-3119(20)63406-2
Abstract148)      PDF in ScienceDirect      
This experiment explored the effects of single application of seven types of slow- and controlled-release fertilizers on rice yield and various population characteristics.  Based on a study of the nitrogen (N) release characteristics of these fertilizers, pot experiments were conducted in 2018 and 2019 with split fertilization (CK, urea applied split equally at basal and panicle initiation stages, respectively) as control, which assessed the effects on SPAD value, yield and yield components, dynamic changes of rice tillers and dry matter accumulation.  The results showed that the N release characteristics of different types of slow- and controlled-release fertilizers were significantly different.  Polymer-coated urea (PCU) showed a controlled-release mode and provided sustained release throughout the whole growth stages.  Sulfur-coated urea (SCU) exhibited a slow-release mode, providing insufficient release at the middle and late stages.  Urease inhibitor urea (AHA) and urea-formaldehyde (UF) yielded a rapid-release mode, with an explosive N release at the early stage and no release at the middle and late stages.  These results showed that PCU delayed the peak seedling stage.  Compared with CK, dry matter accumulation and SPAD showed no significant differences, and due to the continuous release of N throughout the growth stages, rice yield, spikelets per panicle, seed setting rate, and 1 000-grain weight were all increased.  Owing to the lack of N supply at the late stage and the low number of spikelets, SCU led to a reduction of rice yield, which is nevertheless not statistically significant.  AHA and UF were susceptible to environmental factors and had varying effects on rice yield.  The results of this experiment indicated that given a fixed amount of N applied in a pot, the stronger the N supply capacity and the longer the effective duration time of the fertilizer, the higher the dry matter accumulation at the late growth stage, and the higher the rice yield.
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Effects of nitrogen management on the ratoon crop yield and head rice yield in South USA
WANG Yue-chao, LI Xiu-fen, Lee Tarpley, PENG Shao-bing, DOU Fu-gen
2021, 20 (6): 1457-1464.   DOI: 10.1016/S2095-3119(20)63452-9
Abstract113)      PDF in ScienceDirect      
Ratoon rice cropping is an important component of the rice cropping system in Texas and south Louisiana, USA, and expanding in Asian countries.  Two field studies were conducted with widely planted rice (Oryza sativa L.) cultivars at Eagle Lake, Texas, USA to determine the effects of nitrogen (N) management in main (first) crop (MC) and ratoon (second) crop (RC) on RC yield.  In 2012 and 2013, one cultivar (Presidio) was adopted to determine the effects of RC N management on ratoon yield and head rice yield.  In 2016 and 2017, CL153, CL163 and CL272 in addition to Presidio were adopted to examine the effect of MC N management on ratoon yield and head rice yield.  N applied at preflood after MC harvest considerably improved RC yield.  Application of 99 kg N ha–1 at preflood after MC harvest was practically adequate for RC regrowth, development and approaching the yield potential for Presidio.  RC could produce quite high average grain yields of 5.90 to 6.53 t ha–1 in 2012 and 2013, respectively.  Main crop N rate only significantly affected MC yield; however, given N applied of 99 kg ha–1 at preflood after MC harvest, ratoon yield was not significantly affected by MC N rate.  Neither the main nor ratoon crop N management had a significant effect on RC head rice yield.  Considerable RC head rice yields (55–65%) were observed in all of the four cultivars and 4 years except for CL272 in 2016.  These results indicat that without very high N fertilizer application, rice ratoon crop could produce a considerable grain yield and an expectative head rice yield.  Rice ratooning could be a practical way to increase rice yields with the minimal input in south Texas and regions with a similar climate.
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An improved scheme for infectious bursal disease virus genotype classification based on both genome-segments A and B
WANG Yu-long, FAN Lin-jin, JIANG Nan, GAO Li, LI Kai, GAO Yu-long, LIU Chang-jun, CUI Hong-yu, PAN Qing, ZHANG Yan-ping, WANG Xiao-mei, QI Xiao-le
2021, 20 (5): 1372-1381.   DOI: 10.1016/S2095-3119(20)63424-4
Abstract141)      PDF in ScienceDirect      
Infectious bursal disease (IBD) is caused by infectious bursal disease virus (IBDV), which has a genome consisting of two segments of double-stranded linear RNA.  IBDVs have been traditionally divided into four phenotypes based on their pathogenicity and antigenicity, including classic, variant, very virulent, and attenuated IBDV.  With the emergences of divergent molecular characteristics of novel strains produced by continuous mutations and recombination, it is increasingly difficult to define new IBDV strains using the traditional descriptive classification method.  The most common classification scheme for IBDV with segmented genome is based solely on segment A, while the significance of segment B has been largely neglected.  In this study, an improved scheme for IBDV genotype classification based on the molecular characteristics of both VP2 (a viral capsid protein encoded by segment A) and VP1 (an RNA-dependent RNA polymerase protein encoded by segment B) was proposed for the first time.  In this scheme, IBDV was classified into nine genogroups of A and five genogroups of B, respectively; the genogroup A2 was further divided into four lineages.  The commonly used phenotypic classifications of classic, variant, very virulent, and attenuated IBDVs correspond to the A1B1, A2B1, A3B2, and A8B1 genotypes of the proposed classification scheme.  The novel variant IBDVs including the strains identified in this study were classified as belonging to genotype A2dB1.  The flexibility and versatility of this improved classification scheme will allow the unambiguous identification of existing and emerging IBDV strains, which will greatly facilitate molecular epidemiology studies of IBDV.
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Susceptibility and tissue specificity of Spodoptera frugiperda to Junonia coenia densovirus
CHEN Zu-wen, YANG Yan-chao, ZHANG Jian-feng, JIN Ming-hui, XIAO Yu-tao, XIA Zhi-chao, LIU Yuan-yuan, YU Sai-zhen, YANG Yong-bo, WANG Yuan, LI Yi, LIU Kai-yu
2021, 20 (3): 840-849.   DOI: 10.1016/S2095-3119(20)63163-X
Abstract113)      PDF in ScienceDirect      
The fall armyworm, Spodoptera frugiperda, which destroys many economic crops such as rice and maize, has recently invaded China.  Insect viruses as biological control agents play important roles in killing pests.  One potential viral insecticide is the environmentally highly infective and virulent densovirus.  We successfully rescued Junonia coenia densovirus (JcDV) using its infectious clone in different insect cell lines and larvae of three insect species.  Results showed that the lysate of cultured insect cells transfected by the JcDV infectious clone killed the 2nd instar S. frugiperda.  The LD50 of homogenate from JcDV-infected Spodoptera litura to the 2nd instar S. frugiperda (1.76×108 viral genome copies per larva during 10 d post infection) was higher than that of the 2nd instar S. litura (7.39×107 JcDV genome copies) or Helicoverpa armigera larvae (9.71×107 JcDV genome copies).  The LT50 of the S. litura homogenate (2.60×109 viral genome copies each larva) to the 2nd instar S. frugiperda was 6.96 d, longer than that of the S. litura (6.18 d) or the 2nd instar H. armigera (5.94 d).  JcDV could infect the fat body of H. armigera, but not S. frugiperda or S. litura.  Although JcDV can infect all three lepidopteran species, their susceptibility to the virus differs.  JcDV has great potential as a biological control agent against pests such as S. frugiperda.
 
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Overexpression of the MADS-box gene SlMBP21 alters leaf morphology and affects reproductive development in tomato
WANG Yun-shu, GUO Peng-yu, ZHANG Jian-ling, XIE Qiao-li, SHEN Hui, HU Zong-li, CHEN Guo-ping
2021, 20 (12): 3170-3185.   DOI: 10.1016/S2095-3119(21)63638-9
Abstract230)      PDF in ScienceDirect      
Fruit yield is the most important horticultural trait of tomato.  SlMBP21, a SEPALLATA subclass MADS-box gene has been reported to have functions in regulating pedicel abscission zone identity and development and controlling sepal size in tomato.  However, we generated transgenic tomato plants which overexpress SlMBP21 and found the transformants displayed curly leaves, abnormally shaped flowers with twisted and opened stamens, reduced yield parameters, and small and light seeds.  Our studies on the gain-of-function phenotype and gene expression level showed that its novel aspects played important roles in determining leaf morphology, flower and inflorescence architecture, and seed size, as well as the fruit yield.  Overexpression of SlMBP21 in tomato resulted in curly leaves with fewer leaflets due to the regulation of the critical leaf polarity genes that cause an imbalance between the midvein adaxial–abaxial cell growth.  Defects in the architecture of flowers and inflorescences resulted in reduced fruit set.  Furthermore, we demonstrated that SlMBP21 plays its role through inhibiting the expression of the genes involved in the determination of seed development in tomato and SlMBP21 protein can interact with other MADS-box protein (SlAGL11, TAGL1 and SlMBP3) to control seed size.  Thus, these results suggest that overexpression of SlMBP21 causes multiple types of damage to plant growth and development, especially fruit yield, in tomato.
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Metabolic responses to combined water deficit and salt stress in maize primary roots
LI Peng-cheng, YANG Xiao-yi, WANG Hou-miao, PAN Ting, YANG Ji-yuan, WANG Yun-yun, XU Yang, YANG Ze-feng, XU Chen-wu
2021, 20 (1): 109-119.   DOI: 10.1016/S2095-3119(20)63242-7
Abstract143)      PDF in ScienceDirect      
Soil water deficit and salt stress are major limiting factors of plant growth and agricultural productivity.  The primary root is the first organ to perceive the stress signals for drought and salt stress.  In this study, maize plant subjected to drought, salt and combined stresses displayed a significantly reduced primary root length relative to the control plants.  GC-MS was used to determine changes in the metabolites of the primary root of maize in response to salt, drought and combined stresses.  A total of 86 metabolites were measured, including 29 amino acids and amines, 21 organic acids, four fatty acids, six phosphoric acids, 10 sugars, 10 polyols, and six others.  Among these, 53 metabolites with a significant change under different stresses were identified in the primary root, and the content of most metabolites showed down-accumulation.  A total of four and 18 metabolites showed significant up- and down-accumulation to all three treatments, respectively.  The levels of several compatible solutes, including sugars and polyols, were increased to help maintain the osmotic balance.  The levels of metabolites involved in the TCA cycle, including citric acid, ketoglutaric acid, fumaric acid, and malic acid, were reduced in the primary root.  The contents of metabolites in the shikimate pathway, such as quinic acid and shikimic acid, were significantly decreased.  This study reveals the complex metabolic responses of the primary root to combined drought and salt stresses and extends our understanding of the mechanisms involved in root responses to abiotic tolerance in maize.
 
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A LAMP-assay-based specific microbiota analysis reveals community dynamics and potential interactions of 13 major soybean root pathogens
YE Wen-wu, ZENG Dan-dan, XU Miao, YANG Jin, MA Jia-xin, WANG Yuan-chao, ZHENG Xiao-bo
2020, 19 (8): 2056-2063.   DOI: 10.1016/S2095-3119(19)62855-8
Abstract168)      PDF in ScienceDirect      
Soybean root diseases are associated with numerous fungal and oomycete pathogens; however, the community dynamics and interactions of these pathogens are largely unknown.  We performed 13 loop-mediated isothermal amplification (LAMP) assays that targeted specific soybean root pathogens, and traditional isolation assays.  A total of 159 samples were collected from three locations in the Huang-Huai-Hai region of China at three soybean growth stages (30, 60, and 90 days after planting) in 2016.  In LAMP results, we found that pathogen communities differed slightly among locations, but changed dramatically between soybean growth stages.  Phytophthora sojae, Rhizoctonia solani, and Fusarium oxysporum were most frequently detected at the early stage, whereas Phomopsis longicolla, Fusarium equiseti, and Fusarium virguliforme were most common in the later stages.  Most samples (86%) contained two to six pathogen species.  Interestingly, the less detectable species tended to exist in the samples containing more detected species, and some pathogens preferentially co-occurred in diseased tissue, including P. sojaeR. solaniF. oxysporum and F. virguliformeCalonectria ilicicola, implying potential interactions during infection.  The LAMP detection results were confirmed by traditional isolation methods.  The isolated strains exhibited different virulence to soybean, further implying a beneficial interaction among some pathogens.
 
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First report of the South American tomato leafminer, Tuta absoluta (Meyrick), in China
ZHANG Gui-fen, MA De-ying, WANG Yu-sheng, GAO You-hua, LIU Wan-xue, ZHANG Rong, FU Wen-jun, XIAN Xiao-qing, WANG Jun, KUANG Meng, WAN Fang-hao
2020, 19 (7): 1912-1917.   DOI: 10.1016/S2095-3119(20)63165-3
Abstract497)      PDF in ScienceDirect      
Tuta absoluta (Meyrick) originated in South America and is one of the most serious pests of tomatoes.  It is also known to attack other solanaceous crops, including potato, eggplant, pepper, tobacco, and weedy species such as black nightshade.  After accidental introduction into Spain in 2006, this pest spread rapidly throughout Afro-Eurasia and has become a major threat to tomato production worldwide.  Here, we report the first record of T. absoluta as an invasive pest in China.  It was found in tomato fields in Ili Kazakg Autonomous Prefecture, Xinjiang Uygur Autonomous Region (Ili, Xinjiang), China, and its occurrence was confirmed by both morphological and molecular approaches.  In Ili, T. absoluta has been found to attack eggplant, potato, and black nightshade.  We found the larvae generally mining and feeding on leaves and boring into tomato fruits, with multiple larvae sometimes observed in a single fruit.  Its infestation levels differ among the tomato fields and host species.  In all of the surveyed tomato fields, T. absoluta infested 100% of plants.  In some of the fields, up to 90% of the eggplant and 100% of the potato plants were infested.  Since no natural enemies were found under field conditions, suitable management practices are urgently needed to stop the further spread of this destructive pest in China.
 
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