Bai S, Tian Y, Tan C, Bai S, Hao J, Hasi A. 2020. Genome-wide identification of microRNAs involved in the regulation of fruit ripening and climacteric stages in melon (Cucumis melo). Horticulture Research, 7, 106.
Catala R, Lopez-Cobollo R, Mar Castellano M, Angosto T, Alonso J M, Ecker J R, Salinas J. 2014. The Arabidopsis 14-3-3 protein RARE COLD INDUCIBLE 1A links low-temperature response and ethylene biosynthesis to regulate freezing tolerance and cold acclimation. Plant Cell, 26, 3326–3342.
Chen C, Chen H, Zhang Y, Thomas H R, Frank M H, He Y, Xia R. 2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13, 1194–1202.
Chen J, Yin Y. 2017. WRKY transcription factors are involved in brassinosteroid signaling and mediate the crosstalk between plant growth and drought tolerance. Plant Signaling & Behavior, 12, e1365212.
Chen J H, Jiang H W, Hsieh E J, Chen H Y, Chien C T, Hsieh H L, Lin T P. 2012. Drought and salt stress tolerance of an Arabidopsis glutathione S-transferase U17 knockout mutant are attributed to the combined effect of glutathione and abscisic acid. Plant Physiology, 158, 340–351.
Cui Y, Li S, Dong Y, Wu H, Gao Y, Feng Z, Zhao X, Shan L, Zhang Z, Liu Z, Song L, Liu X, Ren H. 2023. Genetic regulation and molecular mechanism of immature cucumber peel color: A review. Vegetable Research, 3, 1–6.
Diao P, Chen C, Zhang Y, Meng Q, Lv W, Ma N. 2020. The role of NAC transcription factor in plant cold response. Plant Signaling & Behavior, 15, 1785668.
Du X, Su M, Jiao Y, Xu S, Song J, Wang H, Li Q. 2022. A transcription factor SlNAC10 gene of Suaeda liaotungensis regulates proline synthesis and enhances salt and drought tolerance. International Journal of Molecular Sciences, 23, 9625.
Duan M, Zhang R, Zhu F, Zhang Z, Gou L, Wen J, Dong J, Wang T. 2017. A lipid-anchored NAC transcription factor is translocated into the nucleus and activates glyoxalase I expression during drought stress. Plant Cell, 29, 1748–1772.
Duvaud S, Gabella C, Lisacek F, Stockinger H, Ioannidis V, Durinx C. 2021. Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. Nucleic Acids Research, 49, W216–W227.
El-Gebali S, Mistry J, Bateman A, Eddy S R, Luciani A, Potter S C, Qureshi M, Richardson L J, Salazar G A, Smart A, Sonnhammer E L L, Hirsh L, Paladin L, Piovesan D, Tosatto S C E, Finn R D. 2019. The Pfam protein families database in 2019. Nucleic Acids Research, 47, D427–D432.
Fenn M A, Giovannoni J J. 2021. Phytohormones in fruit development and maturation. Plant Journal, 105, 446–458.
Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran L S, Yamaguchi-Shinozaki K, Shinozaki K. 2004. A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant Journal, 39, 863–876.
Gao Y, Fan Z Q, Zhang Q, Li H L, Liu G S, Jing Y, Zhang Y P, Zhu B Z, Zhu H L, Chen J Y, Grierson D, Luo Y B, Zhao X D, Fu D Q. 2021. A tomato NAC transcription factor, SlNAM1, positively regulates ethylene biosynthesis and the onset of tomato fruit ripening. Plant Journal, 108, 1317–1331.
Gao Y, Wei W, Zhao X, Tan X, Fan Z, Zhang Y, Jing Y, Meng L, Zhu B, Zhu H, Chen J, Jiang C Z, Grierson D, Luo Y, Fu D Q. 2018. A NAC transcription factor, NOR-like1, is a new positive regulator of tomato fruit ripening. Horticulture Research, 5, 75.
Gao Y, Xu Z, Zhang L, Li S, Wang S, Yang H, Liu X, Zeng D, Liu Q, Qian Q, Zhang B, Zhou Y. 2020. MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice. Nature Communications, 11, 5219.
Gapper N E, Mcquinn R P, Giovannoni J J. 2013. Molecular and genetic regulation of fruit ripening. Plant Molecular Biology, 82, 575–591.
Garapati P, Feil R, Lunn J E, Van Dijck P, Balazadeh S, Mueller-Roeber B. 2015. Transcription factor Arabidopsis activating factor1 integrates carbon starvation responses with trehalose metabolism. Plant Physiology, 169, 379–390.
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González V M, Hénaff E, Câmara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodríguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, et al. 2012. The genome of melon (Cucumis melo L.). Proceedings of the National Academy of Sciences of the United States of America, 109, 11872–11877.
Guo W, Zhang J, Zhang N, Xin M, Peng H, Hu Z, Ni Z, Du J. 2015. The wheat NAC transcription factor TaNAC2L is regulated at the transcriptional and post-translational levels and promotes heat stress tolerance in transgenic Arabidopsis. PLoS ONE, 10, e0135667.
Hajdukiewicz P, Svab Z, Maliga P. 1994. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Molecular Biology, 25, 989–994.
Hong Y, Zhang H, Huang L, Li D, Song F. 2016. Overexpression of a stress-responsive NAC transcription factor gene ONAC022 improves drought and salt tolerance in rice. Frontiers in Plant Science, 7, 4.
Hu B, Jin J, Guo A Y, Zhang H, Luo J, Gao G. 2015. GSDS 2.0: An upgraded gene feature visualization server. Bioinformatics, 31, 1296–1297.
Huang C, Zhao J, Huang Q, Peng L, Huang Z, Li W, Sun S, He Y, Wang Z. 2024. OsNAC3 regulates seed germination involving abscisic acid pathway and cell elongation in rice. New Phytologist, 241, 650–664.
Jiang H W, Liu M J, Chen I C, Huang C H, Chao L Y, Hsieh H L. 2010. A glutathione S-transferase regulated by light and hormones participates in the modulation of Arabidopsis seedling development. Plant Physiology, 154, 1646–1658.
Jin J F, Wang Z Q, He Q Y, Wang J Y, Li P F, Xu J M, Zheng S J, Fan W, Yang J L. 2020. Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress. BMC Genomics, 21, 288.
Kai W, Wang J, Liang B, Fu Y, Zheng Y, Zhang W, Li Q, Leng P. 2019. PYL9 is involved in the regulation of ABA signaling during tomato fruit ripening. Journal of Experimental Botany, 70, 6305–6319.
Kesh H, Kaushik P. 2021. Advances in melon (Cucumis melo L.) breeding: An update. Scientia Horticulturae, 282, 110045.
Khan N, Hu C M, Amjad Khan W, Hou X. 2018. Genome-wide identification, classification, and expression divergence of glutathione-transferase family in Brassica rapa under multiple hormone treatments. BioMed Research International, 2018, 6023457.
Klee H J, Giovannoni J J. 2011. Genetics and control of tomato fruit ripening and quality attributes. Annual Review of Genetics, 45, 41–59.
Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874.
Larrainzar E, Molenaar J A, Wienkoop S, Gil-Quintana E, Alibert B, Limami A M, Arrese-Igor C, Gonzalez E M. 2014. Drought stress provokes the down-regulation of methionine and ethylene biosynthesis pathways in Medicago truncatula roots and nodules. Plant Cell & Environment, 37, 2051–2063.
Le D T, Nishiyama R, Watanabe Y, Mochida K, Yamaguchi-Shinozaki K, Shinozaki K, Tran L S. 2011. Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Research, 18, 263–276.
Lee D K, Chung P J, Jeong J S, Jang G, Bang S W, Jung H, Kim Y S, Ha S H, Choi Y D, Kim J K. 2017. The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance. Plant Biotechnology Journal, 15, 754–764.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van De Peer Y, Rouzé P, Rombauts S. 2002. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325–327.
Letunic I, Bork P. 2021. Interactive tree of life (iTOL) v5: An online tool for phylogenetic tree display and annotation. Nucleic Acids Research, 49, W293–W296.
Li T, Xu Y, Zhang L, Ji Y, Tan D, Yuan H, Wang A. 2017. The Jasmonate-activated transcription factor MdMYC2 regulates ETHYLENE RESPONSE FACTOR and ethylene biosynthetic genes to promote ethylene biosynthesis during apple fruit ripening. Plant Cell, 29, 1316–1334.
Li X, Martín-Pizarro C, Zhou L, Hou B, Wang Y, Shen Y, Li B, Posé D, Qin G. 2023. Deciphering the regulatory network of the NAC transcription factor FvRIF, a key regulator of strawberry (Fragaria vesca) fruit ripening. Plant Cell, 35, 4020–4045.
Li Z, Wei X, Tong X, Zhao J, Liu X, Wang H, Tang L, Shu Y, Li G, Wang Y, Ying J, Jiao G, Hu H, Hu P, Zhang J. 2022. The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice. Molecular Plant, 15, 706–722.
Liu X, Wang T, Bartholomew E, Black K, Dong M, Zhang Y, Yang S, Cai Y, Xue S, Weng Y, Ren H. 2018. Comprehensive analysis of NAC transcription factors and their expression during fruit spine development in cucumber (Cucumis sativus L.). Horticulture Research, 5, 31.
Lu S, Wang J, Chitsaz F, Derbyshire M K, Geer R C, Gonzales N R, Gwadz M, Hurwitz D I, Marchler G H, Song J S, Thanki N, Yamashita R A, Yang M, Zhang D, Zheng C, Lanczycki C J, Marchler-Bauer A. 2020. CDD/SPARCLE: The conserved domain database in 2020. Nucleic Acids Research, 48, D265–D268.
Ma M, Liu S, Wang Z, Shao R, Ye J, Yan W, Lv H, Hasi A, Che G. 2022. Genome-wide identification of the SUN gene family in melon (Cucumis melo) and functional characterization of two CmSUN genes in regulating fruit shape variation. International Journal of Molecular Sciences, 23, 16047.
Ma N, Feng H, Meng X, Li D, Yang D, Wu C, Meng Q. 2014. Overexpression of tomato SlNAC1 transcription factor alters fruit pigmentation and softening. BMC Plant Biology, 14, 351.
Martín-Pizarro C, Vallarino J G, Osorio S, Meco V, Urrutia M, Pillet J, Casañal A, Merchante C, Amaya I, Willmitzer L, Fernie A R, Giovannoni J J, Botella M A, Valpuesta V, Posé D. 2021. The NAC transcription factor FaRIF controls fruit ripening in strawberry. Plant Cell, 33, 1574–1593.
Meng C, Yang D, Ma X, Zhao W, Liang X, Ma N, Meng Q. 2016. Suppression of tomato SlNAC1 transcription factor delays fruit ripening. Journal of Plant Physiology, 193, 88–96.
Olsen A N, Ernst H A, Leggio L L, Skriver K. 2005. NAC transcription factors: Structurally distinct, functionally diverse. Trends in Plant Science, 10, 79–87.
Ooka H, Satoh K, Doi K, Nagata T, Otomo Y, Murakami K, Matsubara K, Osato N, Kawai J, Carninci P, Hayashizaki Y, Suzuki K, Kojima K, Takahara Y, Yamamoto K, Kikuchi S. 2003. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Research, 10, 239–247.
Patil M, Ramu S V, Jathish P, Sreevathsa R, Udayakumar M. 2014. Overexpression of AtNAC2 (ANAC092) in groundnut (Arachis hypogaea L.) improves abiotic stress tolerance. Plant Biotechnology Reports, 8, 161–169.
Peng H, Phung J, Zhai Y, Neff M M. 2020. Self-transcriptional repression of the Arabidopsis NAC transcription factor ATAF2 and its genetic interaction with phytochrome A in modulating seedling photomorphogenesis. Planta, 252, 48.
Qin G, Wang Y, Cao B, Wang W, Tian S. 2012. Unraveling the regulatory network of the MADS box transcription factor RIN in fruit ripening. Plant Journal, 70, 243–255.
Rios P, Argyris J, Vegas J, Leida C, Kenigswald M, Tzuri G, Troadec C, Bendahmane A, Katzir N, Pico B, Monforte A J, Garcia-Mas J. 2017. ETHQV6.3 is involved in melon climacteric fruit ripening and is encoded by a NAC domain transcription factor. Plant Journal, 91, 671–683.
Rolim P M, Fidelis G P, Padilha C E A, Santos E S, Rocha H A O, Macedo G R. 2018. Phenolic profile and antioxidant activity from peels and seeds of melon (Cucumis melo L. var. reticulatus) and their antiproliferative effect in cancer cells. Brazilian Journal of Medical and Biological Research, 51, e6069.
Shan W, Kuang J F, Lu W J, Chen J Y. 2014. Banana fruit NAC transcription factor MaNAC1 is a direct target of MaICE1 and involved in cold stress through interacting with MaCBF1. Plant Cell & Environment, 37, 2116–2127.
Souer E, Van Houwelingen A, Kloos D, Mol J, Koes R. 1996. The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell, 85, 159–170.
Srivastava M K, Dwivedi U N. 2000. Delayed ripening of banana fruit by salicylic acid. Plant Science, 158, 87–96.
Sun Q, Jiang S, Zhang T, Xu H, Fang H, Zhang J, Su M, Wang Y, Zhang Z, Wang N, Chen X. 2019. Apple NAC transcription factor MdNAC52 regulates biosynthesis of anthocyanin and proanthocyanidin through MdMYB9 and MdMYB11. Plant Science, 289, 110286.
Tran L S, Nakashima K, Sakuma Y, Simpson S D, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell, 16, 2481–2498.
Trishla V S, Kirti P B. 2021. Structure-function relationship of Gossypium hirsutum NAC transcription factor, GhNAC4 with regard to ABA and abiotic stress responses. Plant Science, 302, 110718.
Wang J, Tian S, Yu Y, Ren Y, Guo S, Zhang J, Li M, Zhang H, Gong G, Wang M, Xu Y. 2022. Natural variation in the NAC transcription factor NONRIPENING contributes to melon fruit ripening. Journal of Integrative Plant Biology, 64, 1448–1461.
Wang J, Zheng C, Shao X, Hu Z, Li J, Wang P, Wang A, Yu J, Shi K. 2020. Transcriptomic and genetic approaches reveal an essential role of the NAC transcription factor SlNAP1 in the growth and defense response of tomato. Horticulture Research, 7, 209.
Wang L, Fu H, Zhao J, Wang J, Dong S, Yuan X, Li X, Chen M. 2023. Genome-wide identification and expression profiling of glutathione S-transferase gene family in foxtail millet (Setaria italica L.). Plants (Basel), 12, 1138.
Wang P, Lu S, Zhang X, Hyden B, Qin L, Liu L, Bai Y, Han Y, Wen Z, Xu J, Cao H, Chen H. 2021. Double NCED isozymes control ABA biosynthesis for ripening and senescent regulation in peach fruits. Plant Science, 304, 110739.
Wang Y, Cui Y, Liu B, Wang Y, Sun S, Wang J, Tan M, Yan H, Zhang Y. 2022. Lilium pumilum stress-responsive NAC transcription factor LpNAC17 enhances salt stress tolerance in tobacco. Frontiers in Plant Science, 13, 993841.
Wang Y, Tang H, Debarry J D, Tan X, Li J, Wang X, Lee T H, Jin H, Marler B, Guo H, Kissinger J C, Paterson A H. 2012. MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Research, 40, e49.
Wei S, Gao L, Zhang Y, Zhang F, Yang X, Huang D. 2016. Genome-wide investigation of the NAC transcription factor family in melon (Cucumis melo L.) and their expression analysis under salt stress. Plant Cell Reports, 35, 1827–1839.
Xu S, Zhang Z, Zhou J, Han X, Song K, Gu H, Zhu S, Sun L. 2022. Comprehensive analysis of NAC genes reveals differential expression patterns in response to pst DC3000 and their overlapping expression pattern during PTI and ETI in tomato. Genes (Basel), 13, 2015.
Yue P, Lu Q, Liu Z, Lv T, Li X, Bu H, Liu W, Xu Y, Yuan H, Wang A. 2020. Auxin-activated MdARF5 induces the expression of ethylene biosynthetic genes to initiate apple fruit ripening. New Phytologist, 226, 1781–1795.
Zhang X M, Yu H J, Sun C, Deng J, Zhang X, Liu P, Li Y Y, Li Q, Jiang W J. 2017. Genome-wide characterization and expression profiling of the NAC genes under abiotic stresses in Cucumis sativus. Plant Physiology and Biochemistry, 113, 98–109.
Zheng Y, Wu S, Bai Y, Sun H, Jiao C, Guo S, Zhao K, Blanca J, Zhang Z, Huang S, Xu Y, Weng Y, Mazourek M, Reddy U K, Ando K, Mccreight J D, Schaffer A A, Burger J, Tadmor Y, Katzir N, et al. 2019. Cucurbit Genomics Database (CuGenDB): A central portal for comparative and functional genomics of cucurbit crops. Nucleic Acids Research, 47, D1128–D1136.
Zhu F, Luo T, Liu C, Wang Y, Zheng L, Xiao X, Zhang M, Yang H, Yang W, Xu R, Zeng Y, Ye J, Xu J, Xu J, Larkin R M, Wang P, Wen W, Deng X, Fernie A R, Cheng Y. 2020. A NAC transcription factor and its interaction protein hinder abscisic acid biosynthesis by synergistically repressing NCED5 in Citrus reticulata. Journal of Experimental Botany, 71, 3613–3625.
Zhu M, Chen G, Zhou S, Tu Y, Wang Y, Dong T, Hu Z. 2014. A new tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation. Plant and Cell Physiology, 55, 119–135.
|