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Identification of QTLs for seed storability in rice under natural aging conditions using two RILs with the same parent Shennong 265 |
DONG Xiao-yan, FAN Shu-xiu, LIU Jin, WANG Qi, LI Mei-rong, JIANG Xin, LIU Zhen-yu, YIN Ye-chao, WANG Jia-yu |
Rice Research Institute, Shenyang Agricultural University/Key Laboratory of Northeast Rice Biology and Breeding, Ministry of Agriculture/Key Laboratory of Northern japonica Rice Genetics and Breeding, Ministry of Education, Shenyang 110866, P.R.China |
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Abstract Seed storability (SS) is an important trait for agronomic production and germplasm preservation in rice (Oryza sativa L.). Quantitative trait locus (QTL) for seed storability in three storage periods was identified using two sets of recombinant inbred lines (RILs) derived from the crosses with a common female parent Shennong 265 (SN265). Ten QTLs for seed storability were detected on chromosomes 1, 2, 3, 4, 6, 8, and 12 in SL-RILs (SN265/Lijiangxingtuanheigui (LTH)), and a total of 12 QTLs were identified on chromosomes 2, 3, 4, 6, 9, and 10 in SH-RILs (SN265/Luhui 99 (LH99)) in different storage periods. Among these QTLs, five major QTLs were identified in more than one storage period. The qSS3-1, qSS3-2, qSS12-1, and qSS12-2 were detected in SL-RILs. Similarly, qSS2-2, qSS2-3, qSS6-2, qSS6-3, qSS6-4, qSS9-1, and qSS9-2 were detected in SH-RILs. In addition, the maximum phenotypic variation was derived from the qSS6-1 and qSS9-2, explaining 53.58 and 29.09%, respectively, while qSS6-1 was a new stable QTL for seed storability. These results provide an opportunity for pyramiding and map-based cloning major QTLs for seed storability in rice.
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Received: 04 October 2016
Accepted:
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Fund: This research was supported by the Major Project of Education Department in Liaoning, China (LSNZD201604). |
Corresponding Authors:
FAN Shu-xiu, E-mail: sxfan79@126.com; WANG Jia-yu, Tel: +86-24-88487184, Fax: +86-24-88487135, E-mail: ricewjy@126.com
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About author: DONG Xiao-yan, E-mail: 649744837@qq.com |
Cite this article:
DONG Xiao-yan, FAN Shu-xiu, LIU Jin, WANG Qi, LI Mei-rong, JIANG Xin, LIU Zhen-yu, YIN Ye-chao, WANG Jia-yu.
2017.
Identification of QTLs for seed storability in rice under natural aging conditions using two RILs with the same parent Shennong 265. Journal of Integrative Agriculture, 16(05): 1084-1092.
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Agacka-Mo?doch M, Nagel M, Doroszewska T, Lewis R S, Borner A. 2015. Mapping quantitative trait loci determining seed longevity in tobacco (Nicotiana tabacum L.). Euphytica, 202, 479–486.Ashikari M, Matsuoka M. 2006. Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends in Plant Science, 11, 344–350.Bewley J D, Black M. 1994. Seeds: Physiology of Development and Germination. Plenum Press, New York, London. p. 445.Cheng X X, Geng G H, Liu Z. 2012. QTL analysis of grain storage durability for maize under controlled deterioration conditions using SSH markers. Agricultural Sciences & Technology, 13, 1222–1225.Clerkx E J M, Blankestijn-De V H, Ruys G J, Groot S P C, Koornneef M. 2004. Genetic differences in seed longevity of various Arabidopsis mutants. Physiologia Plantarum, 121, 448–461.Deng Z Y, Tian J C, Chen F, Li W J, Zheng F F, Chen J S, Shi C L, Sun C L, Wang S Y, Zhang Y X. 2015. Genetic dissection on wheat flour quality traits in two related populations. Euphytica, 203, 221–235.Gan R, Min P, Jiang T W, Guo X C, Zhong X Y. 2005. QTL associated with seed aging in rice. Acta Agronomica Sinica, 31, 183–187. (in Chinese)Guo L B, Zhu L H, Xu Y B, Zeng D L, Wu P, Qian Q. 2004. QTL analysis of seed dormancy in rice (Oryza sativa L.). Euphytica, 140, 155–162.Huang R Y, Jiang L R, Zheng J S, Wang T S, Wang H C, Huang Y M, Hong Z L. 2013. Genetic bases of rice grain shape: So many genes, so little known. Trends in Plant Science, 18, 218–226.Jiang L, Cao Y J, Wang C M. 2003. Detection and analysis of QTL for seed dormancy in rice (Oryza sativa L.) using RIL and CSSL population. Acta Genetica Sinica, 30, 453–458. (in Chinese)Jiang L, Zhang W W, Zha H Q, Wan J M. 2005. Mapping and analysis of quantitative trait loci controlling seed dormancy in rice. Agricultural Sciences in China, 4, 321–328.Jiang S K, Zhang X J, Zhang F M, Xu Z J, Chen W F, Li Y H. 2012. Identification and fine mapping of qCTH4, a quantitative trait loci controlling the chlorophyll content from tillering to heading in rice (Oryza sativa L.). Journal of Heredity, 103, 720–726.Jiang W Z, Lee J H, Jin Y M, Qiao Y L, Piao R H, Jang S M, Woo M O, Kwon S W, Liu X H, PanH Y, Du X L, Koh H J. 2011. Identification of QTLs for seed germination capability after various storage periods using two RIL populations in rice. Molecular and Cells, 31, 385–392.Khush G S. 2005. What it will take to feed 5.0 billion rice consumers in 2030. Plant Molecular Biology, 59, 1–6.Li H H, Zhang L Y, Wang J K. 2010. Analysis and answers to frequently asked questions in quantitative trait locus mapping. Acta Agronomica Sinica, 36, 918–931. (in Chinese)Li L F, Lin Q Y, Liu S J, Liu X, Wang W Y, Ngo T H, Liu F, Zhao Z G, Jiang L, Wan J M. 2012. Identification of quantitative trait loci for seed storability in rice (Oryza sativa L.). Plant Breeding, 131, 739–743.Lin Q Y, Jiang Y M, Sun A L, Cao P H, Li L F, Liu X, Tian Y L, He J, Liu S J, Chen L M, Jiang L. 2015a. Fine mapping of qSS-9, a major and stable quantitative trait locus for seed storability in rice (Oryza sativa L.). Plant Breeding, 134, 293–299.Lin Q Y, Wang W Y, Ren Y K, Jiang Y M, Sun A L, Qian Ying, Zhang Y F, He N Q, Ngo T H, Liu Z, Li L F, Liu L L, Jiang L, Wan J M. 2015b. Genetic dissection of seed storability using two different populations with a same parent rice cultivar N22. Breeding Science, 65, 411–419. Lin S Y, Sasaki T, Yano M.1998. Mapping quantitative trait loci controlling seed dormancy and heading date in rice (Oryza sativa L.) using backcross inbred lines. Theoretical and Applied Genetics, 96, 997–1003.Lincoln S, Daly M, Lander E. 1993. Constructing Genetic Linkage Maps with MAPMAKER. version 3. Whitehead Institute for Biomedical Research, Cambridge, MA.Miura K, Lin S Y, Yano M, Nagamine T. 2002. Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.). Theoretical and Applied Genetics, 104, 981–986.McCouch S R, Cho Y G, Yano P E, Blinstrub M, Morishima H, Kinoshita T. 1997. Report on QTL nomenclature. Rice Genetica Newsletter, 14, 11–13.Ngo T H, Lin Q Y, Liu L L, Liu X, Liu S J, Wang W Y, Li L F, He N Q, Liu Z, Jiang L, Wan J M. 2014. Mapping QTLs related to rice seed storability under natural and artificial aging storage conditions. Euphytica, 203, 673–681.Sasaki K, Fukuta Y, Sato T. 2005. Mapping of quantitative trait loci controlling seed longevity of rice (Oryza sativa L.) after various periods of seed storage. Plant Breeding, 124, 361–366.Song X J, Huang W, Shi M, Zhu M Z, Lin X. 2007. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature Genetics, 39, 623–630. Tanksley S D. 1993. Mapping polygenes. Annual Review of Genetics, 27, 205–233.Wan X Y, Wan J M, Jiang L, Wang J K, Zhai H Q, Weng J F, Wang H L, Lei C L, Wang J L, Zhang X , Cheng Z J, Guo X P. 2006. QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects. Theoretical and Applied Genetics, 112, 1258–1270. Wang J K, Li H H, Zhang L Y, Lei M. 2012. QTL IciMapping V3.2. Insititute of Crop Sciences, Chinese Academy of Agricultural Science. [2014-08-17]. http://www.isbreeding.netWang X Q , Yin L Q, Lu Y L, Shen G Z. 2011. Starch viscosity character change during rice cereals storage. Plant Physiology Journal, 47, 601–606. (in Chinese)Wang Z F, Wang J F, Bao Y M, Wang F H, Zhang H S. 2010. Quantitative trait loci analysis for rice seed vigor during the germination stage. Journal of Zhejiang University (Science B: Biomedicine & Biotechnology), 11, 958–964. (in Chinese)Wu F X, Zhu Y S, Xie H G, Zhang J F, Xie H A. 2010. Preliminary study on storability of Chinese Micro-core collections of rice. Journal of the Chinese Cereals and Oils Association, 25, 124–128. (in Chinese)Xing Y Z, Zhang Q F. 2010. Genetic and molecular bases of rice yield. Annual Review of Plant Biology, 61, 421–442. Xue Y, Zhang S Q, Yao Q H, Peng R H, Xiong A S, Li X, Zhu W M, Zhu Y Y, Zha D S. 2008. Identi?cation of quantitative trait loci for seed storability in rice (Oryza sativa L.). Euphytica, 164, 739–744.Yamauchi M, Winn T. 1996. Rice seed vigor and seeding establishment in anaerobic soil. Crop Science, 36, 680–686.Yano M, Sasaki T. 1997. Genetic and molecular dissection of quantitative traits in rice. Plant Molecular Biology, 35, 145–153.Zhang L, Li X N, Wang W, Yang S L, Li Q, Wang J Y. 2014. Analysis of QTLs for plant type traits in rice (Oryza sativa L.). Acta Agronomica Sinica, 40, 2128–2135. (in Chinese) Zeng D L, Guo L B, Xu Y B, Yasulumi K, Zhu L H, Qian Q. 2006. QTL analysis of seed storability in rice. Plant Breeding, 125, 57–60. |
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