|
Aloni R, Aloni E, Langhans M, Ullrich C I. 2006. Role of cytokinin and auxin in shaping root architecture: regulating vascular differentiation, lateral root initiation, root apical dominance and root gravitropism. Annals of Botany, 97, 883-893.
Alvarez J M, Sohlberg J, Engström P, Zhu T, Englund M, Moschou P N, Von Arnold S. 2015. The WUSCHEL-RELATED HOMEOBOX 3 gene PaWOX3 regulates lateral organ formation in Norway spruce. New Phytologist, 208, 1078-1088.
An H S, Zhang J Y, Xu F J, Jiang S, Zhang X Y. 2020. Transcriptomic profiling and discovery of key genes involved in adventitious root formation from green cuttings of highbush blueberry (Vaccinium corymbosum L.). BMC Plant Biology, 20,
Baba T, Hirose D, Noma S, Ban T. 2021. Inoculation with two Oidiodendron maius strains differentially alters the morphological characteristics of fibrous and pioneer roots of Vaccinium virgatum 'Tifblue' cuttings. Scientia Horticulturae, 281,
Ballesteros M L, Bolle C, Lois L M, Moore J M, Vielle-Calzada J P, Grossniklaus U, Chua N H. 2001. LAF1, a MYB transcription activator for phytochrome A signaling. Genes Development, 15, 2613-2625.
Cai X-T, Xu P, Zhao P-X, Liu R, Yu L-H, Xiang C-B. 2014. Arabidopsis ERF109 mediates cross-talk between jasmonic acid and auxin biosynthesis during lateral root formation. Nature Communications, 5, 5833.
Castellano M M, Sablowski R. 2008. Phosducin-Like protein 3 is required for microtubule-dependent steps of cell division but not for meristem growth in Arabidopsis. The Plant Cell, 20, 969-981.
Chang Y, Song X, Li M, Zhang Q, Zhang P, Lei X, Pei D. 2022. Characterization of walnut JrWOX11 and its overexpression provide insights into adventitious root formation and development and abiotic stress tolerance. Frontiers in Plant Science, 13, 951737.
Chen G, Feng H M, Hu Q D, Qu H Y, Chen A Q, Yu L, Xu G H. 2015. Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development. Plant Biotechnology Journal, 13, 833-848.
Chen K M, Guo B, Yu C M, Chen P, Chen J K, Gao G, Wang X F, Zhu A G. 2021. Comparative transcriptome analysis provides new Insights into the molecular regulatory mechanism of adventitious root formation in ramie (Boehmeria nivea L.). Plants, 10,
Chen R R, Xu N, Yu B, Wu Q, Li X X, Wang G, Huang J L. 2020b. The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice. Plant Science, 298,
Chen W L, Niu T T, Lian W X, Ye T, Sun Q Y, Zhang J X. 2024. Involvement of endogenous IAA and ABA in the regulation of arbuscular mycorrhizal fungus on rooting of tea plant (Camellia sinensis L.) cuttings. BMC Plant Biology, 24,
Chen X, Yao Q, Gao X, Jiang C, Harberd N P, Fu X. 2016. Shoot-to-Root mobile transcription factor HY5 coordinates plant carbon and nitrogen acquisition. Current Biology, 26, 640-646.
Chiatante D, Rost T, Bryant J, Scippa G S. 2018. Regulatory networks controlling the development of the root system and the formation of lateral roots: a comparative analysis of the roles of pericycle and vascular cambium. Annals of Botany, 122, 697-710.
Cui G C, Zhai Y Q, Li Y, Zheng L Y, Li Y H. 2024. The cleavage of WOX5 by the peptidase DA1 connects cytokinin signaling and root stem cell regulation. Current Biology, 34,
Cusack S A, Wang P P, Lotreck S G, Moore B M, Meng F R, Conner J K, Krysan P J, Lehti-Shiu M D, Shiu S H. 2021. Predictive models of genetic redundancy in Arabidopsis thaliana. Molecular Biology and Evolution, 38, 3397-3414.
Druege U, Franken P, Hajirezaei M R. 2016. Plant hormone homeostasis, signaling, and function during adventitious root formation in cuttings. Frontiers in Plant Science, 7,
Druege U, Hilo A, Pérez-Pérez J M, Klopotek Y, Acosta M, Shahinnia F, Zerche S, Franken P, Hajirezaei M R. 2019. Molecular and physiological control of adventitious rooting in cuttings: phytohormone action meets resource allocation. Annals of Botany, 123, 929-949.
Fukuda H, Hardtke C S. 2019. Peptide signaling pathways in vascular differentiation. Plant Physiology, 182, 1636-1644.
Fukuda Y, Hirao T, Mishima K, Ohira M, Hiraoka Y, Takahashi M, Watanabe A. 2018. Transcriptome dynamics of rooting zone and aboveground parts of cuttings during adventitious root formation in Cryptomeria japonica D. Don. BMC Plant Biology, 18,
Haecker A, Gross-Hardt R, Geiges B, Sarkar A, Breuninger H, Herrmann M, Laux T. 2004. Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development, 131, 657-668.
Hirakawa Y, Kondo Y, Fukuda H. 2010. TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. The Plant Cell, 22, 2618-2629.
Houben M, Van De Poel B. 2019. 1-Aminocyclopropane-1-Carboxylic acid oxidase (ACO): the enzyme that makes the plant hormone ethylene. Frontiers in Plant Science, 10, 695.
Hu X, Xu L. 2016a. Transcription factors WOX11/12 directly activate WOX5/7 to promote root primordia initiation and organogenesis. Plant Physiology, 172, 2363-2373.
Ikeuchi M, Ogawa Y, Iwase A, Sugimoto K. 2016. Plant regeneration: cellular origins and molecular mechanisms. Development, 143, 1442-1451.
Kucukoglu M, Nilsson J, Zheng B, Chaabouni S, Nilsson O. 2017a. WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytologist, 215, 642-657.
Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870-1874.
Lakehal A, Bellini C. 2019a. Control of adventitious root formation: insights into synergistic and antagonistic hormonal interactions. Physiologia Plantarum, 165, 90-100.
Lakehal A, Chaabouni S, Cavel E, Le Hir R, Ranjan A, Raneshan Z, Novák O, Pacurar D I, Perrone I, Jobert F, Gutierrez L, Bakó L, Bellini C. 2019b. A molecular framework for the control of adventitious rooting by TIR1/AFB2-Aux/IAA-dependent auxin signaling in Arabidopsis. Molecular Plant, 12, 1499-1514.
Lakehal A, Dob A, Rahneshan Z, Novak O, Escamez S, Alallaq S, Strnad M, Tuominen H, Bellini C. 2020. ETHYLENE RESPONSE FACTOR 115 integrates jasmonate and cytokinin signaling machineries to repress adventitious rooting in Arabidopsis. New Phytologist, 228, 1611-1626.
Laux T, Mayer K F, Berger J, Jurgens G. 1996. The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development (Cambridge, England), 122, 87-96.
Li H, Wang S, Zhai L, Cui Y, Tang G, Huo J, Li X, Bian S. 2024. The miR156/SPL12 module orchestrates fruit colour change through directly regulating ethylene production pathway in blueberry. Plant Biotechnology Journal, 22, 386-400.
Li J, Jia H, Sun P, Zhang J, Xia Y, Hu J, Wang L, Lu M. 2020. The WUSCHELa (PtoWUSa) is involved in developmental plasticity of adventitious root in poplar. Genes, 11,
Li S W. 2021. Molecular bases for the regulation of adventitious root generation in plants. Frontiers in Plant Science, 12, 614072.
Li X Y, Zhang X Y, Shi T R, Chen M, Jia C G, Wang J Y, Hou Z X, Han J Y, Bian S M. 2022. Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response. BMC Genomics, 23,
Lin H, Niu L, Mchale N A, Ohme-Takagi M, Mysore K S, Tadege M. 2013. Evolutionarily conserved repressive activity of WOX proteins mediates leaf blade outgrowth and floral organ development in plants. Proceedings of the National Academy of Sciences, 110, 366-371.
Liu J, Sheng L, Xu Y, Li J, Yang Z, Huang H, Xu L. 2014. WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis. The Plant Cell, 26, 1081-1093.
Liu X, Zhu K, Xiao J. 2023. Recent advances in understanding of the epigenetic regulation of plant regeneration. aBIOTECH, 4, 31-46.
Liu Y, Wang X Y, Jing S R, Jia C Y, Li H X, Li C H, He Q Y, Zhang N, Guo Y D. 2025. Integration of phytomelatonin signaling with jasmonic acid in wound-induced adventitious root regeneration. Advanced Science,
Lorrai R, Ferrari S. 2021. Host cell wall damage during pathogen infection: mechanisms of perception and role in plant-pathogen interactions. Plants, 10,
Lucas M, Kenobi K, Von Wangenheim D, Voβ U, Swarup K, De Smet I, Van Damme D, Lawrence T, Péret B, Moscardi E, Barbeau D, Godin C, Salt D, Guyomarc'h S, Stelzer E H, Maizel A, Laplaze L, Bennett M J. 2013. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues. Proceedings of the National Academy of Sciences of the United States of America, 110, 5229-5234.
Luschnig C, Friml J. 2024. Over 25 years of decrypting PIN-mediated plant development. Nature Communications, 15, 9904.
Mao J P, Niu C D, Li K, Fan L, Liu Z M, Li S H, Ma D D, Tahir M M, Xing L B, Zhao C P, Ma J J, An N, Han M Y, Ren X L, Zhang D. 2023. Cytokinin-responsive MdTCP17 interacts with MdWOX11 to repress adventitious root primordium formation in apple rootstocks. The Plant Cell, 35, 1202-1221.
Mcadam Sam, Brodribb T J, Ross J J. 2016. Shoot-derived abscisic acid promotes root growth. Plant, Cell & Environment, 39, 652-659.
Meng D, Yang Q, Dong B Y, Song Z H, Niu L L, Wang L T, Cao H Y, Li H H, Fu Y J. 2019. Development of an efficient root transgenic system for pigeon pea and its application to other important economically plants. Plant Biotechnology Journal, 17, 1804-1813.
Motte H, Vanneste S, Beeckman T.2019. Molecular and environmental regulation of root development. Annual Review of Plant Biology, 70, 465-488.
Nakata M, Matsumoto N, Tsugeki R, Rikirsch E, Laux T, Okada K. 2012. Roles of the middle domain-specific WUSCHEL-RELATED HOMEOBOX genes in early development of leaves in Arabidopsis. The Plant Cell, 24, 519-535.
Neogy A, Singh Z, Mushahary K K K, Yadav S R. 2021. Dynamic cytokinin signaling and function of auxin in cytokinin responsive domains during rice crown root development. Plant Cell Reports, 40, 1367-1375.
Nguyen T N, Tuan P A, Mukherjee S, Son S, Ayele B T. 2018. Hormonal regulation in adventitious roots and during their emergence under waterlogged conditions in wheat. Journal of Experimental Botany, 69, 4065-4082.
Niu S H, Li Z X, Yuan H W, Fang P, Chen X Y, Li W. 2013. Proper gibberellin localization in vascular tissue is required to regulate adventitious root development in tobacco. Journal of Experimental Botany, 64, 3411-3424.
Normand L, Bartschi H, Debaud J C, Gay G. 1996. Rooting and acclimatization of micropropagated cuttings of Pinus pinaster and Pinus sylvestris are enhanced by the ectomycorrhizal fungus Hebeloma cylindrosporum. Physiologia Plantarum, 98, 759-766.
Ogura N, Sasagawa Y, Ito T, Tameshige T, Kawai S, Sano M, Doll Y, Iwase A, Kawamura A, Suzuki T, Nikaido I, Sugimoto K, Ikeuchi M. 2023. WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances, 9,
Ohmori Y, Tanaka W, Kojima M, Sakakibara H, Hirano H Y. 2013. WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice. The Plant Cell, 25, 229-241.
Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M. 2007. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. The Plant Cell, 19, 118-130.
Orman-Ligeza B, Parizot B, De Rycke R, Fernandez A, Himschoot E, Van Breusegem F, Bennett M J, Périlleux C, Beeckman T, Draye X. 2016. RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis. Development, 143, 3328-3339.
Pacurar D I, Perrone I, Bellini C. 2014. Auxin is a central player in the hormone cross-talks that control adventitious rooting. Physiologia Plantarum, 151, 83-96.
Pan R, Liu Y, Buitrago S, Jiang W, Gao H R, Han H, Wu C, Wang Y L, Zhang W Y, Yang X S. 2020. Adventitious root formation is dynamically regulated by various hormones in leaf-vegetable sweetpotato cuttings. Journal of Plant Physiology, 253,
Ramakrishna P, Ruiz Duarte P, Rance G A, Schubert M, Vordermaier V, Vu L D, Murphy E, Vilches Barro A, Swarup K, Moirangthem K, Jørgensen B, Van De Cotte B, Goh T, Lin Z, Voβ U, Beeckman T, Bennett M J, Gevaert K, Maizel A, De Smet I. 2019. EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation. Proceedings of the National Academy of Sciences of the United States of America, 116, 8597-8602.
Sajjad M, Wei X, Liu L, Li F, Ge X. 2021. Transcriptome analysis revealed GhWOX4 intercedes myriad regulatory pathways to modulate drought tolerance and vascular growth in cotton. International Journal of Molecular Sciences, 22,
Samalova M, Melnikava A, Elsayad K, Peaucelle A, Gahurova E, Gumulec J, Spyroglou I, Zemlyanskaya E, Ubogoeva E, Balkova D, Demko M, Blavet N, Alexiou P, Benes V, Mouille G, Hejatko J. 2024. Hormone-regulated expansins: Expression, localization, and cell wall biomechanics in Arabidopsis root growth. Plant Physiology, 194, 209-228.
Sarkar A K, Luijten M, Miyashima S, Lenhard M, Hashimoto T, Nakajima K, Scheres B, Heidstra R, Laux T. 2007. Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature, 446, 811-814.
Stevens M E, Woeste K E, Pijut P M. 2018. Localized gene expression changes during adventitious root formation in black walnut (Juglans nigra L.). Tree Physiology, 38, 877-894.
Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque M P, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, et al. 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology, 10, 946-954.
Tang X F, Wang C P, Chai G H, Wang D A, Xu H, Liu Y, He G, Liu S Q, Zhang Y R, Kong Y Z, Li S J, Lu M Z, Sederoff R, Li Q Z, Zhou G K. 2022. Ubiquitinated DA1 negatively regulates vascular cambium activity through modulating the stability of WOX4 in Populus. The Plant Cell, 34, 3364-3382.
Tarancón C, González-Grandío E, Oliveros J C, Nicolas M, Cubas P. 2017. A conserved carbon starvation response underlies bud dormancy in woody and herbaceous species. Frontiers in Plant Science, 8, 788.
Tersenidis C, Poulios S, Komis G, Panteris E, Vlachonasios K. 2024. Roles of histone acetylation and deacetylation in root development. Plants, 13,
Van Der Graaff E, Laux T, Rensing S A. 2009. The WUS homeobox-containing (WOX) protein family. Genome Biology, 10,
Wan Q, Zhai N, Xie D, Liu W, Xu L. 2023. WOX11: the founder of plant organ regeneration. Cell Regeneration, 12, 1.
Wang H, Xie Y, Liu W, Tao G, Sun C, Sun X, Zhang S. 2020. Transcription factor LkWOX4 is involved in adventitious root development in Larix kaempferi. Gene, 758, 144942.
Wang L-Q, Li Z, Wen S-S, Wang J-N, Zhao S-T, Lu M-Z. 2019. WUSCHEL-related homeobox gene PagWOX11/12a responds to drought stress by enhancing root elongation and biomass growth in poplar. Journal of Experimental Botany, 71, 1503-1513.
Willig J J, Guarneri N, Van Loon T, Wahyuni S, Astudillo-Estévez I E, Xu L, Willemsen V, Goverse A, Sterken M G, Lozano-Torres J L, Bakker J, Smant G. 2024. Transcription factor WOX11 modulates tolerance to cyst nematodes via adventitious lateral root formation. Plant Physiology, 195, 799-811.
Wu Y, Yang Z, How J, Xu H, Chen L, Li K. 2017. Overexpression of a peroxidase gene (AtPrx64) of Arabidopsis thaliana in tobacco improves plant's tolerance to aluminum stress. Plant Molecular Biology, 95, 157-168.
Xiao W, Molina D, Wunderling A, Ripper D, Vermeer J E M, Ragni L. 2020. Pluripotent pericycle cells trigger different growth outputs by integrating developmental cues into distinct regulatory modules. Current Biology, 30, 4384-4388.
Xu M, Xie W, Huang M. 2015. Two WUSCHEL-related HOMEOBOX genes, PeWOX11a and PeWOX11b, are involved in adventitious root formation of poplar. Physiologia Plantarum, 155, 446-456.
Xu X, Li X, Hu X, Wu T, Wang Y, Xu X, Zhang X, Han Z. 2017. High miR156 expression is required for auxin-induced adventitious root formation via MxSPL26 independent of PINs and ARFs in malus xiaojinensis. Frontiers in Plant Science, 8, 1059.
Yang Y, Ren Z, Li L, Li Y, Han Y, Liu Y, Cao H. 2024. WOX2 functions redundantly with WOX1 and WOX4 to positively regulate seed germination in Arabidopsis. Planta, 259, 83.
Yasui Y, Ohmori Y, Takebayashi Y, Sakakibara H, Hirano H Y. 2018. WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice. PLOS Genetics, 14, e1007365.
Ye B B, Shang G D, Pan Y, Xu Z G, Zhou C M, Mao Y B, Bao N, Sun L, Xu T, Wang J W. 2020. AP2/ERF transcription factors integrate age and wound signals for root regeneration. The Plant Cell, 32, 226-241.
Zeng D, Shi H, Chen J, Si C, Duan J, Liu Z J, He C. 2025. The ERF5-WOX4 transcription factor regulatory module controls mannan biosynthesis in the orchid Dendrobium officinale. Plant Physiology, 198,
Zhang Y, Von Behrens I, Zimmermann R, Ludwig Y, Hey S, Hochholdinger F. 2015. LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signalling downstream of the Aux/IAA gene rootless with undetectable meristem 1. Journal of Experimental Botany, 66, 3855-3863.
Zhao Y, Cheng S, Song Y, Huang Y, Zhou S, Liu X, Zhou D-X. 2015. The interaction between rice ERF3 and WOX11 promotes crown root development by regulating gene expression involved in cytokinin signaling. The Plant Cell, 27, 2469-2483.
Zhao Y, Hu Y, Dai M, Huang L, Zhou D X. 2009. The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice. The Plant Cell, 21, 736-748.
Zhu J, Shi H, Lee B H, Damsz B, Cheng S, Stirm V, Zhu J K, Hasegawa P M, Bressan R A. 2004. An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proceedings of the National Academy of Sciences of the United States of America, 101, 9873-9878.
|