Abdelmohsen K, Panda A C, De S, Grammatikakis I, Kim J, Ding J, Noh J H, Kim K M, Mattison J A, de Cabo R, Gorospe M. 2015. Circular RNAs in monkey muscle: Age-dependent changes. Aging, 7, 903–910.

Ahmed S M, Hassan K M, El-Sabrout K, Kamel S M. 2020. Crossing effect for improving egg production traits in chickens involving local and commercial strains. Veterinary World, 13, 407–412.

Berisha B, Welter H, Shimizu T, Miyamoto A, Meyer H H, Schams D. 2006. Expression of fibroblast growth factor 1 (FGF1) and FGF7 in mature follicles during the periovulatory period after GnRH in the cow. The Journal of Reproduction and Development, 52, 307–313.

Bu D, Luo H, Huo P, Wang Z, Zhang S, He Z, Wu Y, Zhao L, Liu J, Guo J, Fang S, Cao W, Yi L, Zhao Y, Kong L. 2021. KOBAS-i: Intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. Nucleic Acids Research, 49, W317–W325.

Budna J, Chachuła A, Kaźmierczak D, Rybska M, Ciesiółka S, Bryja A, Kranc W, Borys S, Żok A, Bukowska D, Antosik P, Bruska M, Brüssow K P, Nowicki M, Zabel M, Kempisty B. 2017. Morphogenesis-related gene-expression profile in porcine oocytes before and after in vitro maturation. Zygote, 25, 331–340.

Castilho A C, Nogueira M F, Fontes P K, Machado M F, Satrapa R A, Razza E M, Barros CM. 2014. Ovarian superstimulation using FSH combined with equine chorionic gonadotropin (eCG) upregulates mRNA-encoding proteins involved with LH receptor intracellular signaling in granulosa cells from Nelore cows. Theriogenology, 82, 1199–1205.

Chen Z J. 2013. Genomic and epigenetic insights into the molecular bases of heterosis. Nature reviews. Genetics, 14, 471–482.

Cui Y M, Wang J, Hai J Z, Feng J, Wu S G, Qi G H. 2019. Effect of photoperiod on ovarian morphology, reproductive hormone secretion, and hormone receptor mRNA expression in layer ducks during the pullet phase. Poultry Science, 98, 2439–2447.

Cui Z, Ning Z, Deng X, Du X, Amevor F K, Liu L, Kang X, Tian Y, Wang Y, Li D, Zhao X. 2022. Integrated proteomic and metabolomic analyses of chicken ovary revealed the crucial role of lipoprotein lipase on lipid metabolism and steroidogenesis during sexual maturity. Frontiers in Physiology, 13, 885030.

Dai X X, Jiang Z Y, Wu Y W, Sha Q Q, Liu Y, Ding J Y, Xi W D, Li J, Fan H Y. 2021. CNOT6/6L-mediated mRNA degradation in ovarian granulosa cells is a key mechanism of gonadotropin-triggered follicle development. Cell Reports, 37, 110007.

Dietzel E, Weiskirchen S, Floehr J, Horiguchi M, Todorovic, V, Rifkin, D B, Jahnen D W, Weiskirchen R. 2017. Latent TGF-β binding protein-1 deficiency decreases female fertility. Biochemical and Biophysical Research Communications, 482, 1387–1392.

Drews F, Knöbel S, Moser M, Muhlack K G, Mohren S, Stoll C, Bosio A, Gressner A M, Weiskirchen R. 2008. Disruption of the latent transforming growth factor-beta binding protein-1 gene causes alteration in facial structure and influences TGF-beta bioavailability. Biochimica et Biophysica Acta, 1783, 34–48.

Elling R, Chan J, Fitzgerald K A. 2016. Emerging role of long noncoding RNAs as regulators of innate immune cell development and inflammatory gene expression. European Journal of Immunology, 46, 504–512.

Farghly M F A, Mahrose K M, Rehman Z U, Yu, S, Abdelfattah M G, El-Garhy O H. 2019. Intermittent lighting regime as a tool to enhance egg production and eggshell thickness in Rhode Island Red laying hens. Poultry Science, 98, 2459–2465.

Feibelmann T C, Silva A P, Resende D C, Resende E A, Scatena L M, Borges Mde F. 2015. Puberty in a sample of Brazilian schoolgirls: Timing and anthropometric characteristics. Archives of Endocrinology and Metabolism, 59, 105–111.

Fischer J W, Leung A K. 2017. CircRNAs: A regulator of cellular stress. Critical Reviews in Biochemistry and Molecular Biology, 52, 220–233.

França M M, Mendonca B B. 2022. Genetics of ovarian insufficiency and defects of folliculogenesis. Best Practice & Research Clinical Endocrinology & Metabolism, 36, 101594.

Gao Y, Li S, Lai Z, Zhou Z, Wu F, Huang Y, Lan X, Lei C, Chen H, Dang R. 2019. Analysis of long non-coding RNA and mRNA expression profiling in immature and mature bovine (Bos taurus) testes. Frontiers in Genetics, 10, 646.

Gao Y, Wang J, Zhao F. 2015. CIRI: An efficient and unbiased algorithm for de novo circular RNA identification. Genome Biology, 16, 4.

Gao Y, Wu M, Fan Y, Li S, Lai Z, Huang Y, Lan X, Lei C, Chen H, Dang R. 2018. Identification and characterization of circular RNAs in Qinchuan cattle testis. Royal Society Open Science, 5, 180413.

Geach T. 2016. Neuroendocrinology: MicroRNAs regulate puberty timing. Nature Reviews Endocrinology, 12, 372.

Gu J, Su C, Huang F, Zhao Y, Li J. 2022. Past, present and future: The relationship between circular RNA and immunity. Frontiers in Immunology, 13, 894707.

Haberfeld A, Dunnington E A, Siegel P B, Hillel J. 1996. Heterosis and DNA fingerprinting in chickens. Poultry Science, 75, 951–953.

Hansen T B, Jensen T I, Clausen B H, Bramsen J B, Finsen B, Damgaard C K, Kjems J. 2013. Natural RNA circles function as efficient microRNA sponges. Nature, 495, 384–389.

Huang C, Ge F, Ma X, Dai R, Dingkao R, Zhaxi Z, Burenchao, G, Bao P, Wu X, Guo X, Chu M, Yan P, Liang C. 2021. Comprehensive analysis of mRNA, lncRNA, circRNA, and miRNA expression profiles and their ceRNA networks in the longissimus dorsi muscle of cattle-yak and yak. Frontiers in Genetics, 12, 772557.

Isa A M, Sun Y, Li Y, Wang Y, Ni A, Yuan J, Ma H, Shi L, Tesfay H H, Fan J, Wang P, Chen J. 2022. MicroRNAs with non-additive expression in the ovary of hybrid hens target genes enriched in key reproductive pathways that may influence heterosis for egg laying traits. Frontiers in Genetics, 13, 974619.

Isa A M, Sun Y, Shi L, Jiang L, Li Y, Fan J, Wang P, Ni A, Huang Z, Ma H, Li D, Chen J. 2020. Hybrids generated by crossing elite laying chickens exhibited heterosis for clutch and egg quality traits. Poultry Science, 99, 6332–6340.

Jeck W R, Sharpless N E. 2014. Detecting and characterizing circular RNAs. Nature Biotechnology, 32, 453–461.

Kezele P, Nilsson E E, Skinner M K. 2005. Keratinocyte growth factor acts as a mesenchymal factor that promotes ovarian primordial to primary follicle transition. Biology of Reproduction, 73, 967–973.

Kristensen L S, Andersen M S, Stagsted L V W, Ebbesen K K, Hansen T B, Kjems J. 2019. The biogenesis, biology and characterization of circular RNAs. Nature reviews. Genetics, 20, 675–691.

Langfelder P, Horvath S. 2008. WGCNA: An R package for weighted correlation network analysis. BMC Bioinformatics, 9, 559.

Li J, Shi B, Wang C, Shao C, Liu X, Zhang D. 2021. Comprehensive circRNA profiling and selection of key circRNAs reveal the potential regulatory roles of circRNAs throughout ovarian development and maturation in cynoglossus semilaevis. Biology, 10, 830.

Li M, Liu Y, Zhang X, Liu J, Wang P. 2018. Transcriptomic analysis of high-throughput sequencing about circRNA, lncRNA and mRNA in bladder cancer. Gene, 677, 189–197.

Li Q. 2015. Inhibitory SMADs: Potential regulators of ovarian function. Biology of Reproduction, 92, 50.

Li Q, Pan X, Li N, Gong W, Chen Y, Yuan X. 2021. Identification of circular RNAs in hypothalamus of gilts during the onset of puberty. Genes, 12, 84.

Liu W, Zhang Y, He H, He G, Deng X W. 2022. From hybrid genomes to heterotic trait output: Challenges and opportunities. Current Opinion in Plant Biology, 66, 102193.

Love M I, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15, 550.

Luo Z, Qian J, Chen S, Li L. 2020. Dynamic patterns of circular and linear RNAs in maize hybrid and parental lines. TAG. Theoretical and applied genetics. Theoretical and Applied Genetics, 133, 593–604.

Mai C, Wen C, Xu Z, Xu G, Chen S, Zheng J, Sun C, Yang N. 2021. Genetic basis of negative heterosis for growth traits in chickens revealed by genome-wide gene expression pattern analysis. Journal of Animal Science and Biotechnology, 12, 52.

Matulis C K, Mayo K E. 2012. The LIM domain protein FHL2 interacts with the NR5A family of nuclear receptors and CREB to activate the inhibin-α subunit gene in ovarian granulosa cells. Molecular and Cellular Endocrinology, 26, 1278–1290.

Melo T P, Fortes M R S, Fernandes Junior G A, Albuquerque L G, Carvalheiro R. 2019. RAPID COMMUNICATION: Multi-breed validation study unraveled genomic regions associated with puberty traits segregating across tropically adapted breeds. Journal of Animal Science, 97, 3027–3033.

Memczak S, Jens M, Elefsinioti A, Torti F, Krueger J, Rybak A, Maier L, Mackowiak S D, Gregersen L H, Munschauer M, Loewer A, Ziebold U, Landthaler M, Kocks C, le Noble F, Rajewsky N. 2013. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature, 495, 333–338.

Meng S, Zhou H, Feng Z, Xu Z, Tang Y, Li P, Wu M. 2017. CircRNA: Functions and properties of a novel potential biomarker for cancer. Molecular Cancer, 16, 94.

Pan X, Gong W, He Y, Li N, Zhang H, Zhang Z, Li J, Yuan X. 2021. Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts. BMC Genomics, 22, 445.

Pan X Y, Zhang Z H, Wu L X, Wang Z C. 2015. Effect of HIF-1a/VEGF signaling pathway on plasma progesterone and ovarian prostaglandin F2a secretion during luteal development of pseudopregnant rats. Genetics and Molecular Research, 14, 8796–8809.

Pan Z, Zhang J, Li Q, Li Y, Shi F, Xie Z, Liu H. 2012. Current advances in epigenetic modification and alteration during mammalian ovarian folliculogenesis. Journal of Genetics and Genomics, 39, 111–123.

Perkel J M. 2021. Ten computer codes that transformed science. Nature, 589, 344–348.

Prevot V, Lomniczi A, Corfas G, Ojeda S R. 2005. erbB-1 and erbB-4 receptors act in concert to facilitate female sexual development and mature reproductive function. Endocrinology, 146, 1465–1472.

Ro S, Song R, Park C, Zheng H, Sanders K M, Yan W. 2007. Cloning and expression profiling of small RNAs expressed in the mouse ovary. RNA, 13, 2366–2380.

Rybak-Wolf A, Stottmeister C, Glažar P, Jens M, Pino N, Giusti S, Hanan M, Behm M, Bartok O, Ashwal-Fluss R, Herzog M, Schreyer L, Papavasileiou P, Ivanov A, Öhman M, Refojo D, Kadener S, Rajewsky N. 2015. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed. Molecular Cell, 58, 870–885.

Sauvegarde C, Paul D, Bridoux L, Jouneau A, Degrelle S, Hue I, Rezsohazy R, Donnay I. 2016. Dynamic pattern of HOXB9 protein localization during oocyte maturation and early embryonic development in mammals. PLoS ONE, 11, e0165898.

Schütz L F, Hemple A M, Morrell B C, Schreiber N B, Gilliam J N, Cortinovis C, Totty M L, Caloni F, Aad P Y, Spicer L J. 2022. Changes in fibroblast growth factor receptors-1c, -2c, -3c, and -4 mRNA in granulosa and theca cells during ovarian follicular growth in dairy cattle. Domestic Animal Endocrinology, 80, 106712.

Sekulovski N, Whorton A E, Shi M, Hayashi K, MacLean J A. 2020. Periovulatory insulin signaling is essential for ovulation, granulosa cell differentiation, and female fertility. FASEB Journal, 34, 2376–2391.

Seymour D K, Chae E, Grimm D G, Martín P C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt K M, Koenig D, Weigel D. 2016. Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America, 113, e7317–e7326.

Sha Q Q, Yu J L, Guo J X, Dai X X, Jiang J C, Zhang Y L, Yu C, Ji S Y, Jiang Y, Zhang S Y, Shen L, Ou X H, Fan H Y. 2018. CNOT6L couples the selective degradation of maternal transcripts to meiotic cell cycle progression in mouse oocyte. The EMBO Journal, 37, e99333.

Shen M, Li T, Zhang G, Wu P, Chen F, Lou Q, Chen L, Yin X, Zhang T, Wang J. 2019. Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken. BMC Genomics, 20, 96.

Shen M, Wu P, Li T, Wu P, Chen F, Chen L, Xie K, Wang J, Zhang G. 2020. Transcriptome analysis of circRNA and mRNA in theca cells during follicular development in chickens. Genes, 11, 489.

Shu H Y, Zhou H, Mu H L, Wu S H, Jiang Y L, Yang Z, Hao Y Y, Zhu J, Bao W L, Cheng S H, Zhu G P, Wang Z W. 2021. Integrated analysis of mRNA and non-coding RNA transcriptome in pepper (Capsicum chinense) hybrid at seedling and flowering stages. Frontiers in Genetics, 12, 685788.

Swanson-Wagner R A, Jia Y, DeCook R, Borsuk L A, Nettleton D, Schnable P S. 2006. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proceedings of the National Academy of Sciences of the United States of America, 103, 6805–6810.

Tian W, Zhang B, Zhong H, Nie R, Ling Y, Zhang H, Wu C. 2021. Dynamic expression and regulatory network of circular RNA for abdominal preadipocytes differentiation in chicken (Gallus gallus). Frontiers in Cell and Developmental Biology, 9, 761638.

Di Timoteo, G, Rossi F, Bozzoni I. 2020. Circular RNAs in cell differentiation and development. Development (Cambridge, England), 147, dev182725.

Vromman M, Vandesompele J, Volders P J. 2021. Closing the circle: Current state and perspectives of circular RNA databases. Briefings in Bioinformatics, 22, 288–297.

Wang H, Zhang Y, Sun D Y Y. 2005. Relationship between differential gene expression patterns in chicken ovary and heterosis of egg number in a chicken diallel cross. Chinese Journal of Animal Veterinary Science, 36, 111–115.

Wang J, Ren Q, Hua L, Chen J, Zhang J, Bai H, Li H, Xu B, Shi Z, Cao H, Xing B, Bai X. 2019. Comprehensive analysis of differentially expressed mrna, lncrna and circrna and their ceRNA networks in the longissimus dorsi muscle of two different pig breeds. International Journal of Molecular Sciences, 20, 1107.

Wang J, Zhuo Z, Ma X, Liu Y, Xu J, He C, Fu Y, Wang F, Ji P, Zhang L, Liu G. 2021. Melatonin alleviates the suppressive effect of hypoxanthine on oocyte nuclear maturation and restores meiosis via the melatonin receptor 1 (MT1)-mediated pathway. Frontiers in Cell and Developmental Biology, 9, 648148.

Wang X, Qin T, Peng Z, Zhang Y, Yang Q, Geng X, Salih H, Sun J, He S, Wang Q J I C. 2021. Genome-wide profiling of circular RNAs in the hybridization of two elite inbred lines of Gossypium hirsutum. Industrial Crops and Products, 170, 113754.

Wang Y, Yuan J, Sun Y, Li Y, Wang P, Shi L, Ni A, Zong Y, Zhao J, Bian S, Ma H, Chen J. 2022. Genetic basis of sexual maturation heterosis: Insights from ovary lncRNA and mRNA repertoire in chicken. Frontiers in Endocrinology, 13, 951534.

Wu W, Ji P, Zhao F. 2020 CircAtlas: An integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes. Genome Biology, 21, 101.

Wu X, Li R, Li Q, Bao H, Wu C. 2016. Comparative transcriptome analysis among parental inbred and crosses reveals the role of dominance gene expression in heterosis in Drosophila melanogaster. Scientific Reports, 6, 21124.

Wu Z, Zhang W. 1983. Heterosis and statistical tests. Heredity (Beijing), 5, 24–26. (in Chiense)

Xu C, Shah M A, Mipam T, Wu S, Yi C, Luo H, Yuan M, Chai Z, Zhao W, Cai X. 2020. Bovid microRNAs involved in the process of spermatogonia differentiation into spermatocytes. International Journal of Biological Sciences, 16, 239–250.

Yang L, Mo C, Adetula A A, Elokil A, Li S. 2020. Bilateral apex pubis distance: A novel index for follicular development and egg laying status in domestic hens (Gallus gallus domesticus). British Poultry Science, 61, 195–199.

Zhang H, Klausen C, Zhu H, Chang H M, Leung P C. 2015. BMP4 and BMP7 suppress StAR and progesterone production via ALK3 and SMAD1/5/8-SMAD4 in human granulosa-lutein cells. Endocrinology, 156, 4269–4280.

Zhang J, Chen S, Yang J, Zhao F. 2020. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nature Communications, 11, 90.

Zhao X Y, Wu Y P, Li H Y, Cao Y, Mei Z Y, Li J H. 2022. Differential expression and functional analysis of circRNA in the ovaries of Yili geese at different egg-laying stages. Genes & Genomics, 44, 1171–1180.

Zheng L, Liu L, Lin L, Tang H, Fan X, Lin H, Li X. 2019. Cecal circRNAs are associated with the response to salmonella enterica serovar enteritidis inoculation in the chicken. Frontiers in Immunology, 10, 1186.

Zhu Y, Wang H, Wang J, Han S S, Zhang Y, Ma M G, Zhu Q, Zhang K Y, Yin H D. 2021. Zearalenone induces apoptosis and cytoprotective autophagy in chicken granulosa cells by PI3K-AKT-mTOR and MAPK signaling pathways. Toxins (Basel), 13, 199.