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SUPER WOMAN 2 (SPW2) maintains organ identity in spikelets by inhibiting the expression of floral homeotic genes OsMADS3, OsMADS58, OsMADS13, and DROOPING LEAF
ZHUANG Hui, LAN Jin-song, YANG Qiu-ni, ZHAO Xiao-yu, LI Yu-huan, ZHI Jing-ya, SHEN Ya-lin, HE Guang-hua, LI Yun-feng
2024, 23 (1): 59-76.   DOI: 10.1016/j.jia.2023.07.010
Abstract287)      PDF in ScienceDirect      

Flower organ identity in rice is mainly determined by the A-, B-, C- and E-class genes, with the majority encoding MADS-box transcription factors.  However, few studies have investigated how the expression of these floral organ identity genes is regulated during flower development.  In this study, we identified a gene named SUPER WOMAN 2 (SPW2), which is necessary for spikelet/floret development in rice by participating in the regulation of the expression of pistil identity genes such as OsMADS3, OsMADS13, OsMADS58 and DL.  In the spw2 mutant, ectopic stigma/ovary-like tissues were observed in the non-pistil organs, including sterile lemma, lemma, palea, lodicule, and stamen, suggesting that the identities of these organs were severely affected by mutations in SPW2SPW2 was shown to encode a plant-specific EMF1-like protein that is involved in H3K27me3 modification as an important component of the PRC2 complex.  Expression analysis showed that the SPW2 mutation led to the ectopic expression of OsMADS3, OsMADS13, OsMADS58, and DL in non-pistil organs of the spikelet.  The ChIP-qPCR results showed significant reductions in the levels of H3K27me3 modification on the chromatin of these genes.  Thus, we demonstrated that SPW2 can mediate the process of H3K27me3 modification of pistil-related genes to regulate their expression in non-pistil organs of spikelets in rice.  The results of this study expand our understanding of the molecular mechanism by which SPW2 regulates floral organ identity genes through epigenetic regulation.

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Effects of planting patterns plastic film mulching on soil temperature, moisture, functional bacteria and yield of winter wheat in the Loess Plateau of China
ZHAO Xiao-dong, QIN Xiao-rui, LI Ting-liang, CAO Han-bing, XIE Ying-he
2023, 22 (5): 1560-1573.   DOI: 10.1016/j.jia.2023.02.026
Abstract324)      PDF in ScienceDirect      

The yield of winter wheat is hindered by drought and low temperature in the Loess Plateau of China.  Two common mulching methods to conserve soil moisture, ridge furrows with plastic film mulching (RP) and flat soil surfaces with plastic film mulching (FP) are helpful for wheat production.  Our previous study indicated that FP could improve wheat yield more effectively than RP, but the reason remains unclear.  The effect of mulching method on functional bacteria also needs to be further studied.  In this study, winter wheat was employed to evaluate the impacts of mulching method on soil temperature, moisture content, microorganisms and grain yield.  The results showed that FP had a warming effect when the soil temperature was low and a cooling effect when the temperature was too high.  However, the ability to regulate soil temperature in the RP method was unstable and varied with year.  The lowest negative accumulated soil temperature was found in the FP treatment, which was 20–89 and 43–99% lower than that of the RP and flat sowing with non-film mulching control (NP) treatments, respectively.  Deep soil moisture was better transferred to topsoil for wheat growth in the FP and RP treatments than the NP treatment, which made the topsoil moisture in the two treatments (especially FP) more sufficient than that in the NP treatment during the early growing stage of wheat.  However, due to the limited water resources in the study area, there was almost no difference between treatments in topsoil water storage during the later stage.  The wheat yield in the FP treatment was significantly higher, by 12–16 and 23–56%, respectively, than in the RP and NP treatments.  Significant positive correlations were observed among the negative accumulated soil temperature, spike number and wheat yield.  The Chao1 and Shannon indices in the RP treatment were 17 and 3.9% higher than those in the NP treatment, respectively.  However, according to network relationship analysis, the interspecific relationships of bacteria were weakened in the RP treatment.  Phosphorus solubilizing, ammonification and nitrification bacteria were more active in the RP than in the FP treatment, and microbes with nitrate reduction ability and plant pathogens were inhibited in the RP treatment, which improved nutrient availability and habitat for wheat.

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BnaSD.C3 is a novel major quantitative trait locus affecting semi-dwarf architecture in Brassica napus L.
WANG Xiao-dong, CAI Ying, PANG Cheng-ke, ZHAO Xiao-zhen, SHI Rui, LIU Hong-fang, CHEN Feng, ZHANG Wei, FU San-xiong, HU Mao-long, HUA Wei, ZHENG Ming, ZHANG Jie-fu
2023, 22 (10): 2981-2992.   DOI: 10.1016/j.jia.2023.02.017
Abstract217)      PDF in ScienceDirect      

Plant height is a key plant architectural trait that affects the seed yield, harvest index and lodging resistance in Brassica napus L., although the genetic mechanisms affecting plant height remain unclear.  Here, a semi-dwarf mutant, df34, was obtained by ethyl methanesulphonate-induced mutagenesis.  Genetic analysis showed that the semi-dwarf phenotype is controlled by one semi-dominant gene, which was located on chromosome C03 using a bulked segregant analysis coupled with whole-genome sequencing, and this gene was named BnaSD.C3.  Then BnaSD.C3 was fine-mapped to a 297.35-kb segment of the “Darmor-bzh” genome, but there was no potential candidate gene for the semi-dwarf trait underlying this interval.  Furthermore, the interval was aligned to the Zhongshuang 11 reference genome.  Finally, combining structural variation analysis, transcriptome sequencing, phytohormone analyses and gene annotation information, BnaC03G0466900ZS and BnaC03G0478900ZS were determined to be the most likely candidate genes affecting the plant height of df34.  This study provides a novel major locus for breeding and new insights into the genetic architecture of plant height in Bnapus

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The ciliate protozoan Colpoda cucullus can improve maize growth by transporting soil phosphates
ZHANG Wen-li, LIN Qi-mei, Li Gui-tong, ZHAO Xiao-rong
2022, 21 (3): 855-861.   DOI: 10.1016/S2095-3119(21)63628-6
Abstract129)      PDF in ScienceDirect      
Little is known regarding the ability of protozoans to transfer phosphates and improve maize growth.  The objective of this study was to determine whether Colpoda cucullus could improve the maize phosphorus (P) level by transferring phosphate.  In this three-compartment root box study, the soil in the outer compartment was inoculated with the common ciliate, C. cucullus, together with the addition of either KH232PO4, rock phosphate (RP), super phosphate (SP) or ammonium phosphate (AP), and then maize was grown in the inner compartment.  The results showed that the maize plants grown in the soil inoculated with C. cucullus had much higher 32P radioactivity than the control.  Colpoda cucullus inoculation resulted in significant increases in dry matter by up to 25.07%, and nitrogen (N), P and potassium (K) absorption by 1–36% (P<0.05).  Soil available P in the inner compartment of the root box was also enhanced by at least 30% due to the ciliate inoculation (P<0.05).  It was therefore suggested that phosphates might be transported from the outer to inner compartments by the inoculated C. cucullus and then absorbed by the maize plant. 
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Genome-wide identification, expression and functional analysis of sugar transporters in sorghum (Sorghum bicolor L.) 
XIAO Qian-lin, LI Zhen, WANG Ya-yun, HOU Xian-bin, WEI Xi-mei, ZHAO Xiao, HUANG Lei, GUO Yan-jun, LIU Zhi-zhai
2022, 21 (10): 2848-2864.   DOI: 10.1016/j.jia.2022.07.034
Abstract331)      PDF in ScienceDirect      

Sugar transporters are essential for osmotic process regulation, various signaling pathways and plant growth and development.  Currently, few studies are available on the function of sugar transporters in sorghum (Sorghum bicolor L.).  In this study, we performed a genome-wide survey of sugar transporters in sorghum.  In total, 98 sorghum sugar transporters (SSTs) were identified via BLASTP.  These SSTs were classified into three families based on the phylogenetic and conserved domain analysis, including six sucrose transporters (SUTs), 23 sugars will eventually be exported transporters (SWEETs), and 69 monosaccharide transporters (MSTs).  The sorghum MSTs were further divided into seven subfamilies, including 24 STPs, 23 PLTs, two VGTs, four INTs, three pGlcT/SBG1s, five TMTs, and eight ERDs.  Chromosomal localization of the SST genes showed that they were randomly distributed on 10 chromosomes, and substantial clustering was evident on the specific chromosomes.  Twenty-seven SST genes from the families of SWEET, ERD, STP, and PLT were found to cluster in eight tandem repeat event regions.  In total, 22 SSTs comprising 11 paralogous pairs and accounting for 22.4% of all the genes were located on the duplicated blocks.  The different subfamilies of SST proteins possessed the same conserved domain, but there were some differences in features of the motif and transmembrane helices (TMH).  The publicly-accessible RNA-sequencing data and real-time PCR revealed that the SST genes exhibited distinctive tissue specific patterns.  Functional studies showed that seven SSTs were mainly located on the cell membrane and membrane organelles, and 14 of the SSTs could transport different types of monosaccharides in yeast.  These findings will help us to further elucidate their roles in the sorghum sugar transport and sugar signaling pathways.

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Using transcriptome Shannon entropy to evaluate the off-target effects and safety of insecticidal siRNAs
MA Wei-hua, WU Tong, ZHANG Zan, LI Hang, SITU Gong-ming, YIN Chuan-lin, YE Xin-hai, CHEN Meng-yao, ZHAO Xian-xin, HE Kang, LI Fei
2022, 21 (1): 170-177.   DOI: 10.1016/S2095-3119(20)63394-9
Abstract213)      PDF in ScienceDirect      
A recent breakthrough in agricultural biotechnology is the introduction of RNAi-mediated strategies in pest control.  However, the off-target effects of RNAi pest control are still not fully understood.  Here, we studied the off-target effects of two insecticidal siRNAs in both target and non-target insects.  The results revealed that off-target effects of insecticidal siRNAs occur widely in both target and non-target insects.  We classified the expression-changed genes according to their homology to the siRNA-targeted gene, related KEGG pathways with the siRNA-targeted gene and continuous matches with siRNAs.  Surprisingly, the unintended significant changes in gene expression levels did not strictly match with the number of contiguous nucleotides in the siRNAs.  As expected, the expression of small portions of the homologous and KEGG-related genes were significantly changed.  We calculated the Shannon entropy of the transcriptome profile of the insects after injecting them with insecticidal siRNAs.  Though hundreds of genes were affected in their expression levels post siRNA-treatment, the Shannon entropy of the transcriptome remained unchanged, suggesting that the transcriptome expression was balanced.  Our results provide evidence that siRNAs cross-reacted with individual genes in non-target species, but did not have significant effects on the integrity of the transcriptome profiles in either target or non-target species on a genomic scale.  The metric we proposed can be used to estimate the off-target effects of insecticidal siRNAs, which might be useful for evaluating the safety of RNAi in pest control.  
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The effect of elevating temperature on the growth and development of reproductive organs and yield of summer maize
SHAO Rui-xin, YU Kang-ke, LI Hong-wei, JIA Shuang-jie, YANG Qing-hua, ZHAO Xia, ZHAO Ya-li, LIU Tian-xu
2021, 20 (7): 1783-1795.   DOI: 10.1016/S2095-3119(20)63304-4
Abstract118)      PDF in ScienceDirect      
Compared to other crops, maize production demands relatively high temperatures. However, temperatures exceeding 35°C lead to adverse effects on maize yield.  High temperatures (≥35°C) are consistently experienced by summer maize during its reproductive growth stage in the North China Plain, which is likely to cause irreversible crop damage.  This study investigated the effects of elevating temperature (ET) treatment on the yield component of summer maize, beginning at the 9th unfolding leaf stage and ending at the tasseling stage.  Results demonstrated that continuous ET led to a decrease in the elongation rate and activity of silks and an elongated interval between anthesis and silking stages, and eventually decreased grain number at ear tip and reduced yield.  Although continuous ET before tasseling damaged the anther structure, reduced pollen activity, delayed the start of the pollen shedding stage, and shortened the pollen shedding time, it was inferred, based on phenotypical and physiological traits, that continuous ET after the 9th unfolding leaf stage influenced ears and therefore may have more significant impacts.  Overall, when maize plants were exposed to ET treatment in the ear reproductive development stage, the growth of ears and tassels was blocked, which increased the occurrence of barren ear tips and led to large yield losses.
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Cuticular protein gene LmACP8 is involved in wing morphogenesis in the migratory locust, Locusta migratoria
ZHAO Xiao-ming, YANG Jia-peng, GOU Xin, LIU Wei-min, ZHANG Jian-zhen
2021, 20 (6): 1596-1606.   DOI: 10.1016/S2095-3119(20)63248-8
Abstract115)      PDF in ScienceDirect      
Cuticular proteins (CPs) are major components of the insect cuticle-associated organs such as integument and wings, although the importance of CPs for wing development and function in hemimetabolous insects remains understudied.  In the present study, a wing cuticular protein LmACP8 was identified from Locusta migratoria, which belongs to the RR-2 subfamily of cuticular protein R&R consensus (CPR) chitin-binding proteins.  LmACP8 was mainly expressed in the wing pads and showed high expression levels before ecdysis of third-, fourth-, and fifth-instar nymphs, with its encoded protein located in the procuticle of wing pads and adult wings.  Depletion of LmACP8 by RNA interference markedly reduced the amount of its protein, which consequently caused abnormal wing morphogenesis in the transition from nymph to adult of L. migratoria.  We further demonstrated that the abnormal morphogenesis was caused by severe damage of the endocuticle in the wings.  LmACP8 was suppressed by 20-hydroxyecdysone (20E) in vivo, however, its expression was significantly up-regulated after knocking down the hormone receptor gene LmHR39.  Thus, the LmACP8 that is negatively regulated by the LmHR39-mediated 20E signaling pathway is involved in wing development during the nymph to adult transition.
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Variation in spectral characteristics of dissolved organic matter derived from rape straw of plants grown in Se-amended soil
JIA Wei, ZHAO Xiao-hu, ZHAO Yuan-yuan, XU Jia-yang, MING Jia-jia, CAI Miao-miao, HU Cheng-xiao
2020, 19 (7): 1876-1884.   DOI: 10.1016/S2095-3119(19)62867-4
Abstract123)      PDF in ScienceDirect      
Straw return is an effective management practice.  It not only utilizes agricultural waste but also introduces dissolved organic matter (DOM) into the soil.  Selenium (Se) is an essential trace element in the human diet and contributes to the popularity of Se-enriched agricultural products in the Chinese market.  Moreover, there are still some Se-enriched agricultural products that have yet to be utilized.  This study investigated whether Se addition in soil caused component changes in the DOM extracted from rape straw.  DOM extracted from rape straw grown in soil with four Se levels (0, 0.1, 0.5 and 1.0 mg Se kg–1 soil) was characterized by UV-Visible spectroscopy, fluorescence spectroscopy and FTIR spectroscopy.  The UV-visible spectra revealed that 0.1 mg Se kg–1 soil reduced the molecular weight of DOM and caused the presence of more irreplaceable aromatic structures in the substituent groups of the DOM, while 0.5 and 1.0 mg Se kg–1 soil only reduced the DOM molecular weight.  Fluorescence spectroscopy indicated that Se improved the humification degree but reduced the aromaticity of DOM.  FTIR spectra proved that Se altered the contents of carboxylic acids, amino acids, alcohols and aromatic heterocycles in DOM, which were maximized in the 0.5 and 1.0 mg Se kg–1 treatment groups.  We concluded that Se application could change the composition of DOM extracted from rape straw, potentially impacting the nutrient bioavailability in soil.  This study provides basic data on Se-enriched rape straw utilization for eco-agriculture.
 
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The effects of rootstocks on performances of three late-ripening navel orange varieties
ZHU Shi-ping, HUANG Tao-jiang, YU Xin, HONG Qi-bin, XIANG Jin-song, ZENG An-zhong, GONG Gui-zhi, ZHAO Xiao-chun
2020, 19 (7): 1802-1812.   DOI: 10.1016/S2095-3119(20)63212-9
Abstract166)      PDF in ScienceDirect      
Selection of rootstock is very important for citrus production.  Besides its major role on resistance, the rootstock also can affect fruit production and quality.  Currently, the main concerns on selection of rootstock for citrus production are compatibility and resistance, due to less information on the impacts of rootstock to the performance of scion varieties.  This study aims to provide information on performances of navel orange varieties on different rootstocks.  Three late-ripening navel orange varieties (Citrus sinensis var. Powell, Chislett and Banfield) grafted on seven rootstocks (Swingle citrumelo (C. paradisi×P. trifoliata), Carrizo citrange (C. sinensis×P. trifoliata), X639 (C. reticulata×P. trifoliata), MXT (C. sinensis×P. trifoliata), Hongju (C. reticulata), Ziyang Xiangcheng (C. junos) and trifoliate orange (P. trifoliata)) were used as plant materials for comprehensive comparison of the performances on tree growth, fruit yield and quality in 21 scion–stock combinations.  Investigation was carried out in these combinations in field nine years after planting.  Vigorous growth of all the three late-ripening navel orange varieties was observed on Carrizo citrange with the largest canopy volume at 33.34 m3 and the highest yield at 29.43 kg per tree, but a low yield efficiency at 2.87 kg m–3.  On the contrary, those on trifoliate orange had the smallest canopy volume at 10.79 m3 and the lowest fruit yield at 12.51 kg per tree, but the highest yield efficiency at 3.95 kg m–3. Rootstocks did not show significant effects on fruit size, fruit shape index, peel thickness and the edible rate of the fruits, but fruit quality was significantly affected by the rootstocks.  Fruits from the trees grafted on trifoliate orange presented the best quality with significantly higher total soluble solids (TSS) content than those on Ziyang Xiangcheng and Hongju, and also the highest ratio of TSS/titratable acidity (TA).  The TA content was observed from the fruits on X639 at 0.59 g 100 mL–1.  Vitamin C (Vc) content of fruits on Hongju was the highest at 49.25 mg 100 mL–1.  Growth vigor of the trees was positively correlated with fruit yield at an extremely significant level.  The canopy volume was negatively correlated with yield efficiency, but positively correlated with compatibility index.  Results of this study indicated that the rootstock has great impacts on the growth vigor of the tree, yield efficiency and quality of the fruit.  In order to achieve good quality and yield efficiency for navel orange production, less growth vigor rootstock such as trifoliate orange is highly recommended. 
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Increased BnaMFT-transcript level is associated with secondary dormancy in oilseed rape (Brassica napus L.)
LIU Lei, FAN Wen-qi, LIU Fu-xia, YI Xin, TANG Tang, ZHOU Ying, TANG Zi-wei, CHEN Gui-min, ZHAO Xiang-xiang
2020, 19 (6): 1565-1576.   DOI: 10.1016/S2095-3119(19)62684-5
Abstract133)      PDF in ScienceDirect      
Brassica napus cultivars have little or no primary dormancy; however, they are prone to secondary dormancy induction.  Secondary dormant seeds can produce volunteer plants, which can result in genetic contamination, reduced quality and biosafety issues.  However, information regarding the molecular mechanism underlying secondary dormancy is limited.  The MOTHER OF FT AND TFL1 (MFT) gene, which is evolutionarily conserved in the plant kingdom, acts in a complex gene network in the seed dormancy or germination processes.  In this study, we identified four B. napus genes that share high homology with AtMFT, named as BnaMFT.  Analyses of cis-acting elements showed that BnaMFT promoters contain multiple seed-specific regulatory elements, and various stress- and hormone-responsive elements.  Further experiments validated that BnaMFTs were specifically expressed during seed maturation and in the dry seed, with peaks at 35–42 days after pollination.  BnaMFTs were not sufficient for primary dormancy; however, they were significantly enhanced by secondary dormancy induction with PEG6000 treatment.  Moreover, BnaMFT transcripts were elevated by treatment with abscisic acid (ABA), which is known to be accumulated during secondary dormancy.  These results collectively suggest that increased BnaMFT transcription levels are associated with secondary dormancy induction in an ABA-dependent manner in B. napus.
 
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Progress in understanding hormonal regulation during the post-embryonic development of Helicoverpa armigera
ZHAO Xiao-fan
2020, 19 (6): 1417-1428.   DOI: 10.1016/S2095-3119(19)62860-1
Abstract129)      PDF in ScienceDirect      
Lepidoptera, with 0.16 million species, is the second largest order of insecta.  This order includes silk worms, butterflies, and many agricultural pests.  The cotton bollworm, Helicoverpa armigera (Hübner) is one of the pests in Lepidoptera that seriously harms cotton plant and other crops in China and other countries.  This pest develops resistance to chemical insecticides rapidly.  Bacillus thuringiensis (Bt) transgenic cotton plants are developed to control H. armigera population in the field.  However, during the past years, the rapid evolution of Bt toxin resistance is observed in H. armigera in transgenic cotton fields.  New approaches for the development of new environmentally friendly insecticides to control H. armigera have become necessary, and the molecular mechanisms underlying the development and physiological processes of this species need to be further understood.  Considerable progress in the study of H. armigera development and physiology has been achieved in the last decade.  This mini-review summarizes the main findings on the molecular mechanisms of hormonal regulation of the development of H. armigera to present new target genes for developing new approaches to control the pest.
 
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The CRISPR/Cas9 induces large genomic fragment deletions of MSTN and phenotypic changes in sheep
DING Yi, ZHOU Shi-wei, DING Qiang, CAI Bei, ZHAO Xiao-e, ZHONG Shu, JIN Miao-han, WANG Xiao-long, MA Bao-hua, CHEN Yu-lin
2020, 19 (4): 1065-1073.   DOI: 10.1016/S2095-3119(19)62853-4
Abstract230)      PDF in ScienceDirect      
The CRISPR/Cas9 system has been extensively used to engineer genetic loci for the generation of knockouts, insertions, and point mutations in animal models.  However, many mutations that have been reported in animals are small insertions or deletions.  This study used the CRISPR/Cas9 system to induce large DNA fragment deletions in MSTN via three guide RNAs in sheep.  This successfully achieved the precise gene editing of the ovine MSTN gene by injecting both Cas9 mRNA and sgRNAs into embryos at the one-cell stage.  Of 10 edited animals, 3 animals (30%) exhibited large genomic fragment deletions (~5 kb).  Furthermore, the body weights of these 3 animals were significantly different (P0<0.0001, P15=0.001, P30=0.005, P60=0.027) between lambs with large deletions and wildtype lambs.  In addition, the edited lambs were also significantly different (P0<0.0001, P15<0.0001, P30=0.002, P60=0.011) compared with wildtype.  These results suggest that the generated MSTN knockout sheep is a reliable and effective animal model for further study.  Furthermore, this method is time- and labor-saving, and efficient for the creation of animal models for agriculture, biology, and medicine.
 
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Contrasting resilience of soil microbial biomass, microbial diversity and ammonification enzymes under three applied soil fumigants
SUN Zhen-cai, LI Gui-tong, ZHANG Cheng-lei, WANG Zhi-min, LIN Qi-mei, ZHAO Xiao-rong
2020, 19 (10): 2561-2570.   DOI: 10.1016/S2095-3119(20)63201-4
Abstract121)      PDF in ScienceDirect      
Fumigation is a widely applied approach to mitigate the soil-borne diseases.  However, the potential effects of currently applied fumigants on ammonification remain unclear.  An 84-day incubation experiment was conducted based on non-fumigated soil (CK) and fumigated soil using three common fumigants, i.e., chloropicrin (CP), 1,3-dichloropropene (1,3-D), and metam sodium (MS).  The results showed that, the three fumigants all decreased the microbial C, and the largest reduction (84.7%) occurred with the application of CP.  After fumigation, the microbial diversity in the CP treatment rapidly recovered, but that in the 1,3-D treatment decreased and did not recover by the end of the experiment.  The application of MS showed no impact on the microbial diversity during the assay, indicating that significantly different microbial diversity can be achieved by choosing different fumigants.  Furthermore, the three fumigants showed divergent effects on the enzymes involved in ammonification.  The analysis showed that the enzyme variation with CP application was mainly associated with the changed microbial C and N (P<0.05), and not with the microbial community, which was different from the observed effects of 1,3-D or MS application.  In addition, the soil quality index showed that CP was still significantly harmful at the end of incubation compared with the good resilience of MS, indicating that CP may not be a suitable fumigant.
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Steam explosion of crop straws improves the characteristics of biochar as a soil amendment
CHEN Xue-jiao, LIN Qi-mei, Muhammad Rizwan, ZHAO Xiao-rong, LI Gui-tong
2019, 18 (7): 1486-1495.   DOI: 10.1016/S2095-3119(19)62573-6
Abstract161)      PDF in ScienceDirect      

 

Five crop straws (wheat, rice, maize, oil-rape, and cotton) were first steam-exploded for 2 min at 210°C, 2.5 MPa and then pyrolyzed at 500°C for 2 h.  Steam explosion (SE) induced 47–95% and 5–16% reduction of hemicellulose and cellulose, respectively, in the crop straws.  The biochars derived from SE-treated feedstocks had a lower specific surface area (SSA) and pore volume, compared to those from pristine feedstocks, with one exception that SE enhanced SSA of oil-rape straw biochar by approximately 16 times.  After SE, biochars had significant higher anion exchange capacity (AEC) (6.88–11.44 cmol kg–1) and point of zero net charges (PZNC) (pH 3.61–5.32) values.  It can thus be speculated that these biochars may have higher potential for anions adsorption.  In addition, oil-rape straw might be suitable to SE pretreatment for preparing biochar as a soil amendment and sorbent as well.  Further work is required for testing its application in soil.
 
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LncRNAs are potentially involved in the immune interaction between small brown planthopper and rice stripe virus
CHEN Meng-yao, YE Wan-yi, XIAO Hua-mei, LI Mei-zhen, CAO Zheng-hong, YE Xin-hai, ZHAO Xian-xin, HE Kang, LI Fei
2019, 18 (12): 2814-2822.   DOI: 10.1016/S2095-3119(19)62569-4
Abstract107)      PDF in ScienceDirect      
Small brown planthopper (SBPH, Laodelphax striatellus Fallén) is an important vector of major crop pathogen rice stripe virus (RSV).  Controlling SBPH population is an efficient approach to control RSV.  Long non-coding RNAs (lncRNA) have been reported to block virus replication in hosts.  However, the function of lncRNAs in RSV infection and replication is still unknown.  Here, we aimed to study regulatory mechanisms of lncRNA in an immune system during RSV infection.  First, lncRNA genes were predicted from SBPH transcriptomes using a bioinformatics pipeline based on characteristics of lncRNA.  We identified 4 786 lncRNA genes corresponding to 5 790 transcripts in SBPH from an RNA-Seq dataset of 15 transcriptomes.  Differential expression analysis indicated that 3, 11, and 25 lncRNA genes were highly expressed in gut, salivary gland, and ovary, respectively, of viruliferous SBPH (Student’s t-test, P<0.05).  We randomly selected eight lncRNAs for expression validation using quantitative real-time PCR, confirming the differential expression of these lncRNAs between viruliferous and non-viruliferous SBPH.  In summary, we present evidence that the expression of lncRNA genes was induced by RSV infection, suggesting that RSV might be involved in the antivirus immune system in SBPH and participate in regulating the RSV replication mechanism.  These data provide helpful information for future investigations of the interaction between lncRNA and RSV. 
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Molecular cloning and functional identification of an apple flagellin receptor MdFLS2 gene
QI Chen-hui, ZHAO Xian-yan, JIANG Han, LIU Hai-tao, WANG Yong-xu, HU Da-gang, HAO Yu-jin
2018, 17 (12): 2694-2703.   DOI: 10.1016/S2095-3119(18)62009-X
Abstract266)      PDF (4711KB)(531)      
The leucine-rich repeat receptor kinase flagellin-sensing 2 gene (MdFLS2; Gene ID: MDP0000254112) was cloned from Royal Gala apple (Malus×domestica Borkh.).  This gene contained a complete open reading frame of 3 474 bp that encoded 1 158 amino acids.  The phylogenetic tree indicated that Prunus persica FLS2 exhibited the highest sequence similarity to MdFLS2.  The PlantCare database suggests that the promoter sequence of MdFLS2 contains several typical cis-acting elements, including ethylene-, gibberellin-, salicylic acid-, and drought-responsive elements.  Quantitative real-time PCR analysis showed that MdFLS2 was widely expressed in the different tissues of the apple and most highly expressed in the leaves.  Furthermore, MdFLS2 was significantly induced by the flagellin elicitor peptide flg22.  Treatment of the apple seedling leaves with flg22 resulted in an increase in leaf callose levels with increased treatment duration.  An increase in the production of O2 along with the expression of disease-related genes was also observed.  An oxidative burst was detected in the treated seedlings, but not in the control seedlings, indicating that flg22 had stimulated the expression of the MdFLS2 gene and its downstream target genes.  Furthermore, the ectopic expression of MdFLS2 complemented the function of the Arabidopsis fls2 mutant and conferred enhanced flg22 tolerance to the transgenic Arabidopsis, suggesting that MdFLS2 acts as a positive regulator in the response to pathogens in apple.
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Genetic variation in LBL1 contributes to depth of leaf blades lobes between cotton subspecies, Gossypium barbadense and Gossypium hirsutum
HE Dao-fang, ZHAO Xiang, LIANG Cheng-zhen, ZHU Tao, Muhammad Ali Abid, CAI Yong-ping, HE Jin-ling, ZHANG Rui
2018, 17 (11): 2394-2404.   DOI: 10.1016/S2095-3119(18)61954-9
Abstract374)      PDF in ScienceDirect      
Leaf is a essential part of the plants for photosynthetic activities which mainly economize the resources for boll heath.  Significant variations of leaf shapes across the Gossypium sp. considerably influence the infiltration of sunlight for photosynthesis.  To understand the genetic variants and molecular processes underlying for cotton leaf shape, we used F2 population derived from upland cotton genotype P30A (shallow-lobed leaf) and sea-island cotton genotype ISR (deep-lobed leaf) to map leaf deep lobed phenotype controlling genes LBL1 and LBL2.  Genetic analysis and localization results have unmasked the position and interaction between both loci of LBL1 and LBL2, and revealed the co-dominance impact of the genes in regulating depth of leaf blades lobes in cotton.  LBL1 had been described as a main gene and member of transcription factor family leucine zipper (HD-ZIPI) from a class I homologous domain factor Gorai.002G244000.  The qRT-PCR results elaborated the continuous change in expression level of LBL1 at different growth stages and leaf parts of cotton.  Higher expression level was observed in mature large leaves followed by medium and young leaves respectively.  For further confirmation, plants were tested from hormonal induction treatments, which explained that LBL1 expression was influenced by hormonal signaling.  Moreover, the highest expression level was detected in brassinolides (BR) treatment as compared to other hormones, and this hormone plays an important role in the process of leaf blade lobed formation.
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Characterisation of pH decline and meat color development of beef carcasses during the early postmortem period in a Chinese beef cattle abattoir
ZHANG Yi-min, David L. Hopkins, ZHAO Xiao-xiao, Remy van de Ven, MAO Yan-wei, ZHU Li-xian, HAN Guang-xing, LUO Xin
2018, 17 (07): 1691-1695.   DOI: 10.1016/S2095-3119(17)61890-2
Abstract600)      PDF in ScienceDirect      
This study investigated the pH/temperature decline of beef carcasses in a typical Chinese abattoir and color development as pH declined during rigor onset.  A natural cubic spline model was used to model the pH/temperature decline for those carcasses which passed through pH 6.0.  Six of the 97 carcasses that exhibited a high (≥6.10) ultimate pH (pHu) (dark-cutting) in the M. longissimus lumborum (LL) were sampled, along with the same numbers of normal pHu and intermediate pHu carcasses (5.40–5.79; 5.80–6.10, respectively), to examine color development within 24 h postmortem.  It was shown that 66.7% of the modeled carcasses were outside the ideal pH/temperature window with a temperature@pH6.0 lower than ideal, suggesting the need for acceleration of the pH decline.  The stable and low a*, b* and chroma values of high pHu beef within the first 12 h indicated dark-cutting beef might be detected earlier than expected.   
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Long-term grazing exclusion influences arbuscular mycorrhizal fungi and their association with vegetation in typical steppe of Inner Mongolia, China
CHEN Xue-jiao, LIN Qi-mei, ZHAO Xiao-rong, CHEN Hao, WEN Jing, LI Ying, LI Gui-tong
2018, 17 (06): 1445-1453.   DOI: 10.1016/S2095-3119(17)61881-1
Abstract485)      PDF in ScienceDirect      
It is not certain that long-term grazing exclusion influences arbuscular mycorrhizal (AM) fungi and their association with steppe vegetation.  In this study, soil and plant samples were collected from two sites of grazing exclusion since 1983 (E83) and 1996 (E96), and one site of free-grazing (FG) in the typical steppe of Xilinguole League, Inner Mongolia, China, and assayed for soil basic physicochemical properties, AM fungal parameters, aboveground biomass and shoot phosphorus (P) uptake as well.  The results showed that long-term grazing exclusion of E83 and E96 led to less drastic seasonal changes and significant increases in spore density, hyphal length density and root colonization intensity of AM fungi and even soil alkaline phosphatase activity, by up to 300, 168, 110 and 102%, respectively, compared with those of FG site.  In addition, the total aboveground biomass and shoot P uptake of E83 and E96 were 75–992% and 58–645%, respectively, higher than those of FG.  Generally, the root colonization intensity, spore density, and hyphal length density of AM fungi were all positively correlated with the aboveground biomass and even shoot P uptake of plant.  These results may imply that grazing exclusion play a critical role in increasing the growth of AM fungi, and subsequently, may increase plant P uptake and aboveground biomass production.  Moreover, the spore density could sensitively reflect the impacts of long-term grazing exclusion on AM fungi since survival strategy of spores in soil.
 
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Expression patterns of OCT4, NANOG, and SOX2 in goat preimplantation embryos from in vivo and in vitro
YU Xiao-li, ZHAO Xiao-e, WANG Hua-yan, MA Bao-hua
2015, 14 (7): 1398-1406.   DOI: 10.1016/S2095-3119(14)60923-0
Abstract2255)      PDF in ScienceDirect      
The transcription factors, including OCT4, NANOG, and SOX2, played crucial roles in the maintenance of self-renewal and pluripotency in embryonic stem cells (ESCs). They expressed in preimplantation mammalian development with spatio- temporal pattern and took part in regulation of development. However, their expression and roles in goat had not been reported. In the present study, the expression of OCT4, NANOG, and SOX2 in goat preimplantation embryos both in vivo and in vitro were detected by real-time RCR and immunofluorescence. For in vivo fertilized embryos, the transcripts of OCT4, NANOG, and SOX2 could be detected from oocytes to blastocyst stage, their expression in morula and blastocyst stages was much higher than other stage. OCT4 protein was detected from oocyte to blastocyst, but the fluorescence was more located-intensive with nuclei from 8-cell stage, its expression present in both inner cell mass (ICM) and trophoblast cells (TE) at blastocyse stage. NANOG protein was similar to OCT4, the signaling of fluorescence completely focused on cell nuclei, while the SOX2 firstly showed nuclei location in morula. Comparing to in vivo fertilized embryo, the mRNA of these three transcription factors could be detected at 8-cell stage in parthenogenetic embryos (in vitro). Thereafter, the expressional level rose gradually along with embryo development. The locations of OCT4 and NANOG proteins were similar to in vivo fertilized embryos, and they located in cell nuclei from morula to blastocyst stage, while SOX2 protein firstly could be detected in cell nuclei at 8-cell stage. These differences suggested that OCT4, NANOG, and SOX2 played different function in regulating development of goat preimplantation embryos. These results may provide a novel insight to goat embryo development and be useful for goat ESCs isolation.
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Growth traits and nitrogen assimilation-associated physiological parameters of wheat (Triticum aestivum L.) under low and high N conditions
ZHANG Fei-fei, GAO Si, ZHAO Yuan-yuan, ZHAO Xiao-lei, LIU Xiao-man, XIAO Kai
2015, 14 (7): 1295-1308.   DOI: 10.1016/S2095-3119(14)60957-6
Abstract1980)      PDF in ScienceDirect      
In this study, 14 wheat cultivars with contrasting yield and N use efficiency (NUE) were used to investigate the agronomic and NUE-related traits, and the N assimilation-associated enzyme activities under low and high N conditions. Under deficient-N, the cultivars with high N uptake efficiency (UpE) and high N utilization efficiency (UtE) exhibited higher plant biomass, yields, and N contents than those with medium and low NUEs. The high UpE cultivars accumulated more N than other NUE type cultivars. Under sufficient-N, the tested cultivars showed similar patterns in biomass, yield, and N content to those under deficient-N, but the varietal variations in above traits were smaller. In addition, the high UpE cultivars displayed much more of root biomass and larger of root length, surface area, and volume than other NUE type cultivars, indicating that the root morphological traits under N deprivation are closely associated with the plant biomass through its improvement of the N acquisition. The high UtE cultivars showed higher activities of nitrate reductase (NR), nitrite reductase (NIR), and glutamine synthetase (GS) at stages of seediling, heading and filling than other NUE type cultivars under both low and high N conditions. Moreover, the high UpE and UtE cultivars also displayed higher photosynthetic rate under deficient-N than the medium and low NUE cultivars. Together, our results indicated that the tested wheat cultivars possess dramatically genetic variations in biomass, yield, and NUE. The root morphological traits and the N assimilation enzymatic acitivities play critical roles in regulating N accumulation and internal N translocation under the N-starvation stress, respectively. They can be used as morphological and biochemical references for evaluation of UpE and UtE in wheat.
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Effects of Glutamate and Na+ on the Development and Enzyme Activity of the Oriental Migratory Locust, Locusta migratoria manilensis (Meyen) in Successive Generations
ZHAO Xia, JIA Miao, WANG Lei, CAO Guang-chun , ZHANG Ze-hua
2014, 13 (4): 819-826.   DOI: 10.1016/S2095-3119(13)60516-X
Abstract1755)      PDF in ScienceDirect      
Rapid and mass rearing of Locusta migratoria manilensis is an urgent need to meet the increasing demand for food of people. In this study, the effects of four artificial feeds on the development, reproduction and the activities of detoxification and protective enzymes of L. migratoria manilensis in three successive generations were investigated. The results showed that sucrose and monosodium glutamate (MSG) significantly increased the net reproductive rate (R0) and the intrinsic growth rate (rm) of L. migratoria manilensis, but sodium chloride (0.17%) suppressed this increase. Furthermore, the artificial feed with sucrose and monosodium glutamate increased the activities of esterase (EST), acetylcholinesterase (AChE), glutathione-Stransferase (GST), multi-function oxidase (MFO), phenol oxidase (PO), catalase (CAT) and peroxidase (POD), but inhibited the activity of superoxide dismutase (SOD). However, sodium chloride (0.17%) increased the activities of EST, AChE, CAT and SOD, and inhibited the activities of MFO, GST, PO and POD. Correlation analysis found that the increasing of PO activity and the decreasing of SOD activities were significantly related with the increasing of the intrinsic growth rate (rm). The above results indicated that sucrose and monosodium glutamate could promote the development and reproduction of L. migratoria manilensis, but Na+ inhibit such promotion with the concentration above 0.2%. The activities of PO and SOD can be used as biochemical standard to assess the effect of artificial feed.
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Improvement to Maize Growth Caused by Biochars Derived From Six Feedstocks Prepared at Three Different Temperatures
LUO Yu, JIAO Yu-jie, ZHAO Xiao-rong, LI Gui-tong, ZHAO Li-xin , MENG Hai-bo
2014, 13 (3): 533-540.   DOI: 10.1016/S2095-3119(13)60709-1
Abstract1427)      PDF in ScienceDirect      
Biochar is increasingly proposed as a soil amendment, with reports of benefits to soil physical, chemical and biological properties. In this study, different biochars were produced from 6 feedstocks, including straw and poultry manure, at 3 pyrolysis temperatures (200, 300 and 500°C) and then added separately to a calcareous soil. Their effects on soil properties and maize growth were evaluated in a pot experiment. The biochars derived from crop straw had much higher C but smaller N concentrations than those derived from poultry manure. Carbon concentrations, pH and EC values increased with increasing pyrolysis temperature. Biochar addition resulted in increases in mean maize dry matter of 12.73% and NPK concentrations of 30, 33 and 283%, respectively. Mean soil pH values were increased by 0.45 units. The biochar-amended soils had 44, 55, 254 and 537% more organic C, total N, Olsen-P and available K, respectively, than the control on average. Both feedstocks and pyrolysis temperature determined the characteristics of the biochar. Biochars with high mineral concentrations may act as mineral nutrient supplements.
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Crop Yield and Soil Properties in the First 3 Years After Biochar Application to a Calcareous Soil
LIANG Feng, LI Gui-tong, LIN Qi-mei , ZHAO Xiao-rong
2014, 13 (3): 525-532.   DOI: 10.1016/S2095-3119(13)60708-X
Abstract1834)      PDF in ScienceDirect      
It remains unclear whether biochar applications to calcareous soils can improve soil fertility and crop yield. A long-term field experiment was established in 2009 so as to determine the effect of biochar on crop yield and soil properties in a calcareous soil. Five treatments were: 1) straw incorporation; 2) straw incorporation with inorganic fertilizer; 3), 4) and 5) straw incorporation with inorganic fertilizer, and biochar at 30, 60, and 90 t ha-1, respectively. The annual yield of either winter wheat or summer maize was not increased significantly following biochar application, whereas the cumulative yield over the first 4 growing seasons was significantly increased. Soil pH, measured in situ, was increased by a maximum of 0.35 units after 2 yr following biochar application. After 3 yr, soil bulk density significantly decreased while soil water holding capacity increased with adding biochar of 90 t ha-1. Alkaline hydrolysable N decreased but exchangeable K increased due to biochar addition. Olsen-P did not change compared to the treatment without biochar. The results suggested that biochar could be used in calcareous soils without yield loss or significant impacts on nutrient availability.
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The Hydrochar Characters of Municipal Sewage Sludge Under Different Hydrothermal Temperatures and Durations
ZHANG Jin-hong, LIN Qi-mei , ZHAO Xiao-rong
2014, 13 (3): 471-482.   DOI: 10.1016/S2095-3119(13)60702-9
Abstract7225)      PDF in ScienceDirect      
Innovative measure is a urgent requirement for managing the huge volume of municipal sewage sludge. The hydrothermal carbonation (HTC) shows some potential advantages for using hydrochar as a soil conditioner. The aim of this work was to investigate the properties of hydrochars, by means of the HTC of municipal sewage sludge under different temperatures (190 and 260°C) and reaction hours (1, 6, 12, 18 and 24 h). The HTC led to the decreases of N, O and H contents by more than 54.6, 37.9 and 10.0%, respectively, and slight changes of C content. The Py-GC-MS analysis showed that a large proportion of fatty acids, in particular hexadecanoic acid, transferred into alkenes, olefins and aromatic compounds. The 13C-NMR and fourier transform infrared spectra (FTIR) confirmed the transformation and changes in chemical structure in which hydrochar contained lower oxygen-containing organic C of O-alkyl, carboxylic and carbonyl C and aliphaticity, but higher aromatic C and aromaticity. The rich hydrophobic functions induced in high positive charges in the charred sludge. The HTC facilitated the pore structure development, proved by higher specific surface area and specific pore volume, with a maximum of 17.30 and 0.83 cm3 g-1, respectively. The availabilities of N, P and K markedly reduced during HTC treatment. The activities of most heavy metals were depressed though they accumulated in the hydrochar. Further work is required to investigate the values and risk of the charred sludge amended to soil.
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Accumulation of Carbohydrate and Regulation of 14-3-3 Protein on Sucrose Phosphate Synthase (SPS) Activity in Two Tomato Species
WANG Li, CUI Na, ZHAO Xiao-cui, FAN Hai-yan , LI Tian-lai
2014, 13 (2): 358-364.   DOI: 10.1016/S2095-3119(13)60373-1
Abstract2208)      PDF in ScienceDirect      
To explore the differences of carbohydrate metabolism in two tomato species and discuss the possible regulation of 14-3-3 proteins on the sucrose phosphate synthase (SPS) activity, we determined the contents of soluble sugar and starch through high performance liquid chromatography (HPLC). The activities of sugar-metabolizing enzymes were assayed in desalted extract, and the relative expression levels of related genes in sugar metabolism were determined though real-time RT-PCR. The results indicated that glucose and fructose were mainly accumulated during the maturation of the fruit because of the high acid invertase (AI) and neutral invertase (NI) in Micro-Tom (Solanum lycopersicum) fruit, while in Solanum chmielewskii fruit, SPS which went along with the change of sucrose content led to the rapid sucrose increase during the fruit ripening. TFT1 and TFT10, belonging to 14-3-3 protein in tomato, were likely to down-regulated SPS activity during young and intumescence period.
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Effects of Neutral Detergent Soluble Fiber and Sucrose Supplementation on Ruminal Fermentation, Microbial Synthesis, and Populations of Ruminal Cellulolytic Bacteria Using the Rumen Simulation Technique (RUSITEC)
ZHAO Xiang-hui, LIU Chan-juan, LI Chao-yun , YAO Jun-hu
2013, 12 (8): 1471-1480.   DOI: 10.1016/S1671-2927(00)9061
Abstract1334)      PDF in ScienceDirect      
We evaluated the effects of neutral detergent soluble fiber (NDSF) and sucrose supplementation on ruminal fermentation, microbial synthesis, and populations of ruminal cellulolytic bacteria using the rumen simulation technique (RUSITEC). The experiment had a 2×2 factorial design with two dosages of sucrose, low (ca. 0.26 g d-1, low-sucrose) and high (ca. 1.01 g d-1, high-sucrose), and two dosages of supplied NDSF, low (1.95 g d-1, low-NDSF) and high (2.70 g d-1, high-NDSF). Interactions between NDSF and sucrose were detected for xylanase activity from solid fraction and apparent disappearance of neutral detergent fiber (NDF) and hemicellulose, with the lowest values observed for high-NDSF and high-sucrose treatment. Supplemental NDSF appeared to increase the molar proportion of acetate and reduce that of butyrate; however, the effects of supplemental sucrose on VFA profiles depended upon NDSF amount. There was a NDSF×sucrose interaction for the production of methane. High-NDSF fermenters had lower ammonia-N production, greater daily N flow of solidassociated microbial pellets and total microorganisms, and greater microbial synthesis efficiency compared with low- NDSF fermenters. Supplementation with NDSF resulted in an increase in 16S rDNA copies of Ruminococcus flavefaciens and a reduction in copies of Ruminococcus albus. Supplementation with sucrose tended to increase the 16S rDNA copies of R. albus from liquid fraction, but did not affect daily total microbial N flow and cellulolytic bacterium populations from solid fraction. These data indicate that the effects of the interaction between NDSF and sugars on ruminal fermentation and fiber digestion should be taken into account in diet formulation. Ruminal fermentation and metabolism of sugars warrant further investigation.
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Construction of a New Molecular Barcode for Discriminating Plants and Animals with a Close Genetic Relationship
HUANG Li, ZHAO Xiao-feng, ZHU Yi-peng, DONG Heng, XU Ning-ying , CAO Jia-shu,
2013, 12 (7): 1138-1151.   DOI: 10.1016/S1671-2927(00)8925
Abstract1459)      PDF in ScienceDirect      
DNA barcodes have been proposed as a shortcut to provide species identification and as a way to accelerate the discovery of new species. A number of candidate gene regions have been suggested as possible barcodes for animals and plants, but for the identification of recently diverged species and/or varieties with only a few genetic differences it has been reported to be problematic in some cases. This study selected widely cultivated cruciferous vegetables as the primary samples, after failure of discrimination of each species using current DNA barcodes, we performed the fluorescent amplified fragment length polymorphism (F-AFLP) and successfully discriminated each species, subspecies, variety and their cultivar in 74 samples. Then the non-qualitative results obtained from F-AFLP were transformed into two-dimensional barcodes image file of each cultivar via the PDF417 software. This method was also successfully applied to the discrimination of 17 Chinese indigenous pig breeds. The barcode we constructed which greatly reduces the information storage space is genotypes-specific, and can be conveniently decoded into the original data and thereby be conveniently shared and referred to. We believe that it is possible to construct a new data sharing molecular barcode system that could discriminate the subspecies, varieties, cultivars and even individuals with close genetic relationships.
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Unintended Changes in Genetically Modified Rice Expressing the Lysine-Rich Fusion Protein Gene Revealed by a Proteomics Approach
ZHAO Xiang-xiang, TANG Tang, LIU Fu-xia, LU Chang-li, HU Xiao-lan, JI Li-lian , LIU Qiaoquan
2013, 12 (11): 2013-2021.   DOI: 10.1016/S2095-3119(13)60539-0
Abstract1294)      PDF in ScienceDirect      
Development of new technologies for evaluating genetically modified (GM) crops has revealed that there are unintended insertions and expression changes in GM crops. Profiling techniques are non-targeted approaches and are capable of detecting more unintended changes in GM crops. Here, we report the application of a comparative proteomic approach to investigate the protein profile differences between a GM rice line, which has a lysine-rich protein gene, and its non-transgenic parental line. Proteome analysis by two-dimensional gel electrophoresis (2-DE) and mass spectrum analysis of the seeds identified 22 differentially expressed protein spots. Apart from a number of glutelins that were detected as targeted proteins in the GM line, the majority of the other changed proteins were involved in carbohydrate metabolism, protein synthesis and stress responses. These results indicated that the altered proteins were not associated with plant allergens or toxicity.
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