Agrawal G K, Abe K, Yamazaki M, Miyao A, Hirochika H.
2005. Conservation of the E-function for floral organ identity in rice revealed
by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene. Plant Molecular Biology, 59, 125–135.
Alvarez J, Smyth D R. 1999. CRABS CLAW and SPATULA,
two Arabidopsis genes that control carpel development in parallel with AGAMOUS. Development, 126, 2377–2386.
Arber A. 2010. The Gramineae: A Study of Cereal, Bamboo and Grass. Cambridge University Press.
Aubert D. 2001. EMF1, a novel protein involved in the
control of shoot architecture and flowering in Arabidopsis. The Plant Cell, 13, 1865–1875.
Bommert P, Satoh-Nagasawa N, Jackson D, Hirano H Y. 2005.
Genetics and evolution of inflorescence and flower development in grasses. Plant and Cell Physiology, 46, 69–78.
Bowman J L, Drews G N, Meyerowitz E M. 1991. Expression
of the Arabidopsis floral homeotic gene AGAMOUS is restricted to
specific cell types late in flower development. The Plant Cell, 3, 749–758.
Calonje M, Sanchez R, Chen L J, Sung Z R. 2008. EMBRYONIC
FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis. The Plant Cell, 20, 277–291.
Cao R, Wang L J, Wang H B, Xia L, Erdjument-Bromage H,
Tempst P, Jones R S, Zhang Y. 2002. Role of histone H3 lysine 27 methylation in
polycomb-group silencing. Science, 298, 1039–1043.
Chen L J, Cheng J C, Castle L, Sung Z R. 1997. EMF genes regulate Arabidopsis inflorescence development. The Plant Cell, 9, 2011–2024.
Chen X M. 2004. A microRNA as a translational repressor
of APETALA2 in Arabidopsis flower development. Science, 303,
2022–2025.
Chen Y H, Yang X Y, He K, Liu M H, Li J G, Gao Z F, Lin Z
Q, Zhang Y F, Wang X X, Qiu X M, Shen Y P, Zhang L, Deng X H, Luo J C, Deng X
W, Chen Z L, Gu H Y, Qu L J. 2006. The MYB transcription factor superfamily of Arabidopsis:
Expression analysis and phylogenetic comparison with the rice MYB family. Plant Molecular Biology, 60, 107–124.
Coen E S, Meyerowitz E M. 1991. The war of the whorls:
Genetic interactions controlling flower development. Nature, 353,
31–37.
Ditta G, Pinyopich A, Robles R, Pelaz S, Yanofsky M F.
2004. The SEP4 gene of Arabidopsis thaliana functions in
floral organ and meristem identity. Current Biology, 14,
1935–1940.
Dreni L, Jacchia S, Fornara F, Fornari M, Ouwerkerk P B
F, An G, Colombo L, Kater M M. 2007. The D-lineage MADS-box gene OSMADS13 controls ovule identity in rice. The Plant Journal, 52,
690–699.
Dreni L, Kater M M. 2014. MADS reloaded: Evolution
of the AGAMOUS subfamily genes. New Phytologist, 201,
717–732.
Dreni L, Pilatone A, Yun D, Erreni S, Pajoro A, Caporali
E, Zhang D, Kater M M. 2011. Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity
determination and meristem determinacy. The Plant Cell, 23,
2850–2863.
Duan Y L, Xing Z, Diao Z J, Xu W Y, Li S P, Du X Q, Wu G
H, Wang C L, Lan T, Meng Z, Liu H Q, Wang F, Wu W R, Xue Y B. 2012.
Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Molecular Biology, 80, 429–442.
Fornara F, Marziani G, Mizzi L, Kater M, Colombo L. 2003.
MADS-box genes controlling flower development in rice. Plant Biology, 5, 16–22.
Fornara F, Pařenicová L, Falasca G, Pelucchi N, Masiero
S, Ciannamea S, Lopez-Dee Z, Altamura M M, Colombo L, Kater M M. 2004.
Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS-box genes. Plant Physiology, 135,
2207–2219.
Gao X C, Liang W Q, Yin C S, Ji S M, Wang H M, Su X, Guo
C, Kong H Z, Xue H W, Zhang D B. 2010. The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development. Plant Physiology, 153, 728–740.
Goodrich J, Puangsomlee P, Martin M, Long D, Meyerowitz E
M, Coupland G. 1997. A polycomb-group gene regulates homeotic gene expression
in Arabidopsis. Nature, 386, 44–51.
Hong L L, Qian Q, Zhu K M, Tang D, Huang Z J, Gao L, Li
M, Gu M H, Cheng Z K. 2010. ELE restrains empty glumes from developing into
lemmas. Journal of Genetics and Genomics, 37,
101–115.
Horigome A, Nagasawa N, Ikeda K, Ito M, Itoh J I, Nagato
Y. 2009. Rice OPEN BEAK is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene. The Plant Journal, 58, 724–736.
Hoshikawa K. 1989. The Growing Rice Plant - An
Anatomical Monograph. Nosan Gyoson Bunka Kyokai, Tokyo.
Hu Y, Wang L, Jia R, Liang W Q, Zhang X L, Xu J, Chen X
F, Lu D, Chen M J, Luo Z J, Xie J Y, Cao L M, Xu B, Yu Y, Persson S, Zhang D B,
Yuan Z. 2021. Rice transcription factor MADS32 regulates floral patterning
through interactions with multiple floral homeotic genes. Journal of Experimental Botany, 72, 2434–2449.
Ikeda K, Sunohara H, Nagato Y. 2004. Developmental course
of inflorescence and spikelet in rice. Breeding Science, 54,
147–156.
Ikeda-Kawakatsu K, Maekawa M, Izawa T, Itoh J I, Nagato
Y. 2012. ABERRANT PANICLE ORGANIZATION 2/RFL, the
rice ortholog of Arabidopsis LEAFY, suppresses the transition
from inflorescence meristem to floral meristem through interaction with APO1. The Plant Journal, 69, 168–180.
Jeon J S. 2000. leafy hull sterile1 is a homeotic mutation in a rice MADS-box gene affecting rice flower
development. The Plant Cell, 12, 871–884.
Kang H G, Joen J S, Lee S, An G. 1998. Identification of
class B and class C floral organ identity genes from rice plants. Plant Molecular Biology, 38, 1021–1029.
Kater M M, Dreni L, Colombo L. 2006. Functional
conservation of MADS-box factors controlling floral organ identity in rice and Arabidopsis. Journal of Experimental Botany, 57,
3433–3444.
Kim S Y, Zhu T, Sung Z R. 2010. Epigenetic regulation of
gene programs by EMF1 and EMF2 in Arabidopsis. Plant Physiology, 152, 516–528.
Kobayashi K, Maekawa M, Miyao A, Hirochika H, Kyozuka J.
2010. PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA
subfamily MADS-box protein, positively controls spikelet meristem identity in
rice. Plant and Cell Physiology, 51, 47–57.
Köhler C, Villar C B R. 2008. Programming of gene
expression by Polycomb Group proteins. Trends in Cell Biology, 18, 236–243.
Krogan N T, Hogan K, Long J A. 2012. APETALA2 negatively
regulates multiple floral organ identity genes in Arabidopsis by
recruiting the co-repressor TOPLESS and the histone deacetylase HDA19. Development, 139, 4180–4190.
Kyozuka J, Kobayashi T, Morita M, Shimamoto K. 2000.
Spatially and temporally regulated expression of rice MADS-box genes with
similarity to Arabidopsis class A, B and C genes. Plant and Cell Physiology, 41, 710–718.
Lee S, Jeon J S, An K, Moon Y H, Lee S, Chung Y Y, An G.
2003. Alteration of floral organ identity in rice through ectopic expression of OsMADS16. Planta, 217, 904–911.
Levy Y Y, Dean C. 1998. The transition to flowering. The Plant Cell, 10, 1973–1989.
Li H, Xue D W, Gao Z Y, Yan M X, Xu W Y, Xing Z, Huang D
N, Qian Q, Xue Y B. 2009. A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice. The Plant Journal, 57, 593–605.
Li H F, Liang W Q, Jia R D, Yin C S, Zong J, Kong H Z,
Zhang D B. 2010. The AGL6-like gene OsMADS6 regulates floral
organ and meristem identities in rice. Cell Research, 20,
299–313.
Li Y F, Zeng X Q, Li Y, Wang L, Zhuang H, Wang Y, Tang J,
Wang H L, Xiong M, Yang F Y, Yuan X Z, He G H. 2020. Multi-floret spikelet 2, a
MYB transcription factor, determines spikelet meristem fate and floral organ
identity in rice. Plant Physiology, 184, 988–1003.
Litt A, Kramer E M. 2010. The ABC model and the
diversification of floral organ identity. Seminars in Cell & Developmental Biology, 21, 129–137.
Liu X, Yang C Y, Miao R, Zhou C L, Cao P H, Lan J, Zhu X
J, Mou C L, Huang Y S, Liu S J, Tian Y L, Nguyen T L, Jiang L, Wan J M. 2018.
DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of
brassinosteroid signaling. Rice, 11, 1–12.
Lohmann J U, Weigel D. 2002. Building beauty: the genetic
control of floral patterning. Developmental Cell, 2,
135–142.
Moon Y H, Chen L J, Pan R L, Chang H S, Zhu T, Maffeo D
M, Sung Z R. 2003. EMF genes maintain vegetative development by
repressing the flower program in Arabidopsis. The Plant Cell, 15, 681–693.
Mozgova I, Köhler C, Henning L. 2015. Keeping the gate
closed: Functions of the polycomb repressive complex PRC2 in development. The Plant Journal, 83, 121–132.
Müller J, Hart C M, Francis N J, Vargas M L, Simon J A.
2002. Histone methyltransferase activity of a Drosophila polycomb group
repressor complex. Cell, 111, 197–208.
Nagasawa N, Miyoshi M, Sano Y, Satoh H, Hirano H, Sakai
H, Nagato Y. 2003. SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice. Development, 130,
705–718.
Pelaz S, Ditta G S, Baumann E, Wisman E, Yanofsky M F.
2000. B and C floral organ identity functions require SEPALLATA MADS-box
genes. Nature, 405, 200–203.
Pelucchi N, Fornara F, Favalli C, Masiero S, Lago C, Pè E
M, Colombo L, Kater M M. 2002. Comparative analysis of rice MADS-box genes
expressed during flower development. Sexual Plant Reproduction, 15, 113–122.
Prasad K, Parameswaran S, Vijayraghavan U. 2005. OsMADS1,
a rice mads-box factor, controls differentiation of specific cell types in the
lemma and palea and is an early-acting regulator of inner floral organs. The Plant Journal, 43, 915–928.
Prasad K, Vijayraghavan U. 2003. Double-stranded RNA
interference of a rice PI/GLO paralog, OsMADS2, uncovers its
second-whorl-specific function in floral organ patterning. Genetics, 165,
2301–2305.
Sang X C, Li Y F, Luo Z K, Ren D Y, Fang L K, Wang N,
Zhao F M, Ling Y H, Yang Z L, Liu Y S. 2012. CHIMERIC FLORAL ORGANS1,
encoding a Monocot-specific MADS-box protein, regulates floral organ identity
in rice. Plant Physiology, 160, 788–807.
Schatlowski N, Creasey K, Goodrich J, Schubert D. 2008.
Keeping plants in shape: Polycomb-group genes and histone methylation. Seminars in Cell & Developmental Biology, 19,
547–553.
Schubert D, Clarenz O, Goodrich J. 2005. Epigenetic
control of plant development by polycomb-group proteins. Current Opinion in Plant Biology, 8, 553–561.
Schubert D, Primavesi L, Bishopp A, Roberts G, Doonan J,
Jenuwein T, Goodrich J. 2006. Silencing by plant Polycomb-group genes requires
dispersed trimethylation of histone H3 at lysine 27. The EMBO Journal, 25, 4638–4649.
Schwartz Y B, Pirrotta V. 2007. Polycomb silencing
mechanisms and the management of genomic programmes. Nature Reviews Genetics, 8, 9–22.
Schwartz Y B, Pirrotta V. 2008. Polycomb complexes and
epigenetic states. Current Opinion in Cell Biology, 20, 266–273.
Siriwardana N S, Lamb R S. 2012. The poetry of
reproduction: The role of LEAFY in Arabidopsis thaliana flower
formation. International Journal of Developmental Biology, 56, 207–221.
Soltis D E, Chanderbali A S, Kim S, Buzgo M, Soltis P S.
2007. The ABC model and its applicability to basal angiosperms. Annals of Botany, 100, 155–163.
Theissen G, Melzer R, Rümpler F. 2016. MADS-domain
transcription factors and the floral quartet model of flower development:
linking plant development and evolution. Development, 143,
3259–3271.
Theissen G, Saedler H. 2001. Plant biology floral
quartets. Nature, 409, 469–471.
Turck F, Roudier F, Farrona S, Martin-Magniette M L,
Colot V. 2007. Arabidopsis TFL2/LHP1 specifically associates with genes
marked by trimethylation of histone H3 lysine 27. PLoS Genetics, 3,
855–866.
Wang H H, Zhang L, Cai Q, Hu Y, Jin Z M, Zhao X X, Fan W,
Huang Q M, Luo Z J, Chen M J, Zhang D B, Yuan Z. 2015. OsMADS32 interacts with
PI-like proteins and regulates rice flower development. Journal of Integrative Plant Biology, 57, 504–513.
Wang K J, Tang D, Hong L L, Xu W Y, Huang J, Li M, Gu M
H, Xue Y B, Cheng Z K, Schnable P S. 2010. DEP and AFO regulate
reproductive habit in rice. PLoS Genetics, 6, 1000818.
Wang L, Zeng X Q, Zhuang H, Shen Y L, Chen H, Wang Z W,
Long J C, Ling Y H, He G H, Li Y F. 2017. Ectopic expression of OsMADS1 caused dwarfism and spikelet alteration in rice. Plant Growth Regulation, 81, 433–442.
Weigel D, Meyerowitz E M. 1994. The ABCs of floral
homeotic genes. Cell, 78, 203–209.
Winter C M, Austin R S, Blanvillain-Baufumé S, Reback M
A, Wagner D. 2011. LEAFY target genes reveal floral regulatory logic, cis motifs, and a link to biotic stimulus response. Developmental Cell, 20, 430–443.
Wollmann H, Mica E, Todesco M, Long J A, Weigel D. 2010.
On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development, 137,
3633–3642.
Wu M F, Sang Y, Bezhani S, Yamaguchi N, Han S K, Li Z, Su
Y, Slewinski T L, Wagner D. 2012. SWI2/SNF2 chromatin remodeling ATPases
overcome polycomb repression and control floral organ identity with the LEAFY
and SEPALLATA3 transcription factors. Proceedings of the National Academy of Sciences of the United States of America, 109, 3576–3581.
Xiao H, Tang J F, Li Y F, Wang W M, Li X B, Jin L, Xie R,
Luo H F, Zhao X F, Meng Z, He G H, Zhu L H. 2009. STAMENLESS 1,
encoding a single C2H2 zinc finger protein, regulates floral organ identity in
rice. The Plant Journal, 59, 789–801.
Xiao H, Wang Y, Liu D F, Wang W M, Li X B, Zhao X F, Xu J
C, Zhai W X, Zhu L H. 2003. Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference. Plant Molecular Biology, 52,
957–966.
Xu J, Yang C Y, Yuan Z, Zhang D S, Gondwe M Y, Ding Z W, Liang W Q, Zhang D B, Zoe A. 2010. The aborted microspores regulatory network is required for postmeiotic male
reproductive development in Arabidopsis thaliana. The Plant Cell, 22, 91–107.
Yadav S R, Prasad K, Vijayraghavan U. 2007. Divergent
regulatory OsMADS2 functions control size, shape and differentiation of
the highly derived rice floret second-whorl organ. Genetics, 176,
283–294.
Yamaguchi T, Lee D Y, Miyao A, Hirochika H, An G, Hirano
H Y. 2006. Functional diversification of the two C-class MADS-box genes OsMADS3 and OsMADS58 in Oryza sativa. The Plant Cell, 18, 15–28.
Yamaguchi T, Nagasawa N, Kawasaki S, Matsuoka M, Nagato
Y, Hirano H. 2004. The YABBY gene DROOPING LEAF regulates
carpel specification and midrib development in Oryza sativa. The Plant Cell, 16, 500–509.
Yan D W, Zhang X M, Zhang L, Ye S H, Zeng L J, Liu J Y,
Li Q, He Z H. 2015. CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. The Plant Journal, 82,
12–24.
Yang C H, Chen L J, Sung Z R. 1995. Genetic regulation of
shoot development in Arabidopsis: Role of the EMF genes. Developmental Biology, 169, 421–435.
Yoshida A, Ohmori Y, Kitano H, Taguchi-Shiobara F, Hirano
H Y. 2012. ABERRANT SPIKELET AND PANICLE1, encoding
a TOPLESS-related transcriptional co-repressor, is involved in the regulation
of meristem fate in rice. The Plant Journal, 70,
327–339.
Yoshida A, Suzaki T, Tanaka W, Hirano H Y. 2009. The
homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the
rice spikelet. Proceedings of the National Academy of Sciences of the United States of America, 106,
20103–20108.
Zhang T, Li Y F, Ma L, Sang X C, Ling Y H, Wang Y T, Yu
P, Zhuang H, Huang J Y, Wang N, Zhao F M, Zhang C W, Yang Z L, Fang L K, He G H.
2017. LATERAL FLORET 1 induced the three-florets spikelet
in rice. Proceedings of the National Academy of Sciences of the United States of America, 114,
9984–9989.
Zheng M, Wang Y H, Wang Y L, Wang C M, Ren Y L, Lv J, Peng C, Wu T, Liu K, Zhao S L, Liu X, Guo X P, Jiang L, Terzaghi W, Wan J M. 2015. DEFORMED FLORAL ORGAN1 (DFO1)
regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa). New Phytologist, 206,
1476–1490.
Zhuang H, Wang H L, Zhang T, Zeng X Q, Li Y F. 2020. NONSTOP GLUMES1 encodes a C2H2 zinc finger protein that regulates spikelet
development in rice. The Plant Cell, 32, 392–413.
|